메뉴 건너뛰기




Volumn 52, Issue 11, 2009, Pages 904-911

HACRE1, a recently inserted copia-like retrotransposon of sunflower (Helianthus annuus L.)

Author keywords

Copia; Helianthus annuus; Retrotransposon; Sunflower

Indexed keywords

PLANT DNA;

EID: 70350662567     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G09-064     Document Type: Article
Times cited : (18)

References (38)
  • 1
    • 0034830923 scopus 로고    scopus 로고
    • Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants
    • Beguiristain, T., Grandbastien, M.A., Puigdomènech, P., and Casacuberta, J.M. 2001. Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants. Plant Physiol. 127(1): 212-221.
    • (2001) Plant Physiol. , vol.127 , Issue.1 , pp. 212-221
    • Beguiristain, T.1    Grandbastien, M.A.2    Puigdomènech, P.3    Casacuberta, J.M.4
  • 2
    • 0024470037 scopus 로고
    • Transcription and reverse transcription of retrotransposons
    • Boeke, J.D., and Corces, V.G. 1989. Transcription and reverse transcription of retrotransposons. Annu. Rev. Microbiol. 43(1): 403-434.
    • (1989) Annu. Rev. Microbiol. , vol.43 , Issue.1 , pp. 403-434
    • Boeke, J.D.1    Corces, V.G.2
  • 3
  • 4
    • 0000479431 scopus 로고
    • Isolation of plant DNA from fresh tissue
    • Doyle, J.J., and Doyle, J.L. 1989. Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
    • (1989) Focus , vol.12 , pp. 13-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 5
    • 0000122573 scopus 로고
    • PHYLIP: Phylogeny inference package
    • Felsenstein, J. 1989. PHYLIP: phylogeny inference package. Cladistics, 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 6
    • 0026741959 scopus 로고
    • Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants
    • Flavell, A.J., Dunbar, E., Anderson, R., Pearce, S.R., Hartley, R., and Kumar, A. 1992. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res. 20(14): 3639-3644.
    • (1992) Nucleic Acids Res. , vol.20 , Issue.14 , pp. 3639-3644
    • Flavell, A.J.1    Dunbar, E.2    Anderson, R.3    Pearce, S.R.4    Hartley, R.5    Kumar, A.6
  • 7
    • 0034943374 scopus 로고    scopus 로고
    • Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifers
    • Friesen, N., Brandes, A., and Heslop-Harrison, J.S. 2001. Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifers. Mol. Biol. Evol. 18(7): 1176-1188.
    • (2001) Mol. Biol. Evol. , vol.18 , Issue.7 , pp. 1176-1188
    • Friesen, N.1    Brandes, A.2    Heslop-Harrison, J.S.3
  • 8
    • 0035718006 scopus 로고    scopus 로고
    • A bacterial artificial chromosome (BAC) library for sunflower, and identification of clones containing genes for putative transmembrane receptors
    • Gentzbittel, L., Abbott, A., Galaud, J.P., Georgi, L., Fabre, F., Liboz, T., and Alibert, G. 2002. A bacterial artificial chromosome (BAC) library for sunflower, and identification of clones containing genes for putative transmembrane receptors. Mol. Genet. Genomics, 266(6): 979-987.
    • (2002) Mol. Genet. Genomics , vol.266 , Issue.6 , pp. 979-987
    • Gentzbittel, L.1    Abbott, A.2    Galaud, J.P.3    Georgi, L.4    Fabre, F.5    Liboz, T.6    Alibert, G.7
  • 9
    • 0041707630 scopus 로고    scopus 로고
    • Analysis of a dehydrin encoding gene and its phylogenetic utility in Helianthus
    • Giordani, T., Natali, L., and Cavallini, A. 2003. Analysis of a dehydrin encoding gene and its phylogenetic utility in Helianthus. Theor. Appl. Genet. 107(2): 316-325.
    • (2003) Theor. Appl. Genet. , vol.107 , Issue.2 , pp. 316-325
    • Giordani, T.1    Natali, L.2    Cavallini, A.3
  • 10
    • 0032080772 scopus 로고    scopus 로고
    • Activation of plant retrotransposons under stress conditions
    • Grandbastien, M.A. 1998. Activation of plant retrotransposons under stress conditions. Trends Plant Sci. 3(5): 181-187.
    • (1998) Trends Plant Sci. , vol.3 , Issue.5 , pp. 181-187
    • Grandbastien, M.A.1
  • 11
    • 0024978849 scopus 로고
    • Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • Grandbastien, M.A., Spielmann, A., and Caboche, M. 1989. Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature, 337(6205): 376-380.
    • (1989) Nature , vol.337 , Issue.6205 , pp. 376-380
    • Grandbastien, M.A.1    Spielmann, A.2    Caboche, M.3
  • 12
    • 37249085596 scopus 로고    scopus 로고
    • Selective sweeps in the homoploid hybrid species Helianthus deserticola: Evolution in concert across populations and across origins
    • Gross, B.L., Turner, K.G., and Rieseberg, L.H. 2007. Selective sweeps in the homoploid hybrid species Helianthus deserticola: evolution in concert across populations and across origins. Mol. Ecol. 16(24): 5246-5258.
    • (2007) Mol. Ecol. , vol.16 , Issue.24 , pp. 5246-5258
    • Gross, B.L.1    Turner, K.G.2    Rieseberg, L.H.3
  • 13
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database: 1999
    • Higo, K., Ugawa, Y., Iwamoto, M., and Korenaga, T. 1999. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 27(1): 297-300.
    • (1999) Nucleic Acids Res. , vol.27 , Issue.1 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3    Korenaga, T.4
  • 16
    • 1942421723 scopus 로고    scopus 로고
    • Large retrotransposon derivatives: Abundant, conserved but nonautonomous retroelements of barley and related genomes
    • Kalendar, R., Vicient, C.M., Peleg, O., Anamthawat-Jonsson, K., Bolshoy, A., and Schulman, A.H. 2004. Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics, 166(3): 1437-1450.
    • (2004) Genetics , vol.166 , Issue.3 , pp. 1437-1450
    • Kalendar, R.1    Vicient, C.M.2    Peleg, O.3    Anamthawat-Jonsson, K.4    Bolshoy, A.5    Schulman, A.H.6
  • 17
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16(2): 111-120.
    • (1980) J. Mol. Evol. , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 18
    • 0023654956 scopus 로고
    • Improved method for the isolation of RNA from plant tissues
    • Logemann, J., Schell, J., and Willmitzer, L. 1987. Improved method for the isolation of RNA from plant tissues. Anal. Biochem. 163(1): 16-20.
    • (1987) Anal. Biochem. , vol.163 , Issue.1 , pp. 16-20
    • Logemann, J.1    Schell, J.2    Willmitzer, L.3
  • 19
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • Ma, J., and Bennetzen, J.L. 2004. Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. U.S.A. 101(34): 12404-12410.
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , Issue.34 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 20
    • 0033867739 scopus 로고    scopus 로고
    • MarY1, a member of the gypsy group of long terminal repeat retroelements from the ectomycorrhizal basidiomycete Tricholoma matsutake
    • Murata, H., and Yamada, A. 2000. marY1, a member of the gypsy group of long terminal repeat retroelements from the ectomycorrhizal basidiomycete Tricholoma matsutake. Appl. Environ. Microbiol. 66(8): 3642-3645.
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.8 , pp. 3642-3645
    • Murata, H.1    Yamada, A.2
  • 21
    • 33644947611 scopus 로고    scopus 로고
    • Distribution of Ty3-gypsy- and Ty1-copia-like DNA sequences in the genus Helianthus and other Asteraceae
    • Natali, L., Santini, S., Giordani, T., Minelli, S., Maestrini, P., Cionini, P.G., and Cavallini, A. 2006. Distribution of Ty3-gypsy- and Ty1-copia-like DNA sequences in the genus Helianthus and other Asteraceae. Genome, 49(1): 64-72.
    • (2006) Genome , vol.49 , Issue.1 , pp. 64-72
    • Natali, L.1    Santini, S.2    Giordani, T.3    Minelli, S.4    Maestrini, P.5    Cionini, P.G.6    Cavallini, A.7
  • 23
    • 37449001326 scopus 로고    scopus 로고
    • Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light
    • Ramallo, E., Kalendar, R., Schulman, A.H., and Martínez-Izquierdo, J.A. 2008. Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light. Plant Mol. Biol. 66(1-2): 137-150.
    • (2008) Plant Mol. Biol. , vol.66 , Issue.1-2 , pp. 137-150
    • Ramallo, E.1    Kalendar, R.2    Schulman, A.H.3    Martínez-Izquierdo, J.A.4
  • 24
    • 0035400605 scopus 로고    scopus 로고
    • Chromosomal rearrangements and speciation
    • Rieseberg, L.H. 2001. Chromosomal rearrangements and speciation. Trends Ecol. Evol. 16(7): 351-358.
    • (2001) Trends Ecol. Evol. , vol.16 , Issue.7 , pp. 351-358
    • Rieseberg, L.H.1
  • 25
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas, J., and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics, 15(2): 174-175.
    • (1999) Bioinformatics , vol.15 , Issue.2 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 27
    • 0031005443 scopus 로고    scopus 로고
    • Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data
    • Schilling, E.E. 1997. Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data. Theor. Appl. Genet. 94(6-7): 925-933.
    • (1997) Theor. Appl. Genet. , vol.94 , Issue.6-7 , pp. 925-933
    • Schilling, E.E.1
  • 28
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene
    • GC1-GC10
    • Sonnhammer, E.L., and Durbin, R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene, 167(1-2): GC1-GC10.
    • (1995) , vol.167 , Issue.1-2
    • Sonnhammer, E.L.1    Durbin, R.2
  • 29
    • 0036945043 scopus 로고    scopus 로고
    • Genomic and chromosomal organization of Ty1-copia-like sequences in Olea europaea and evolutionary relationships of Olea retroelements
    • Stergiou, G., Katsiotis, A., Hagidimitriou, M., and Loukas, M. 2002. Genomic and chromosomal organization of Ty1-copia-like sequences in Olea europaea and evolutionary relationships of Olea retroelements. Theor. Appl. Genet. 104(6-7): 926-933.
    • (2002) Theor. Appl. Genet. , vol.104 , Issue.6-7 , pp. 926-933
    • Stergiou, G.1    Katsiotis, A.2    Hagidimitriou, M.3    Loukas, M.4
  • 30
    • 0034488740 scopus 로고    scopus 로고
    • MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes
    • Sugimoto, K., Takeda, S., and Hirochika, H. 2000. MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes. Plant Cell, 12(12): 2511-2528.
    • (2000) Plant Cell , vol.12 , Issue.12 , pp. 2511-2528
    • Sugimoto, K.1    Takeda, S.2    Hirochika, H.3
  • 31
    • 0032033103 scopus 로고    scopus 로고
    • Gypsy-like retrotransposons are widespread in the plant kingdom
    • Suoniemi, A., Tanskanen, J., and Schulman, A.H. 1998. Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J. 13(5): 699-705.
    • (1998) Plant J. , vol.13 , Issue.5 , pp. 699-705
    • Suoniemi, A.1    Tanskanen, J.2    Schulman, A.H.3
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22): 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 33750018038 scopus 로고    scopus 로고
    • Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
    • Ungerer, M.C., Strakosh, S.C., and Zhen, Y. 2006. Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr. Biol. 16(20): R872-R873.
    • (2006) Curr. Biol. , vol.16 , Issue.20
    • Ungerer, M.C.1    Strakosh, S.C.2    Zhen, Y.3
  • 34
    • 0002915381 scopus 로고
    • Retroviruses
    • In Mobile DNA. Edited by D.E. Berg and M.M. Howe, Washington, D.C
    • Varmus, H., and Brown, P. 1989. Retroviruses. In Mobile DNA. Edited by D.E. Berg and M.M. Howe. American Society for Microbiology, Washington, D.C. pp.53-108.
    • (1989) American Society for Microbiology , pp. 53-108
    • Varmus, H.1    Brown, P.2
  • 35
    • 33845186134 scopus 로고    scopus 로고
    • Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
    • Vitte, C., and Bennetzen, J.L. 2006. Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc. Natl. Acad. Sci. U.S.A. 103(47): 17638-17643.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , Issue.47 , pp. 17638-17643
    • Vitte, C.1    Bennetzen, J.L.2
  • 37
    • 0000465745 scopus 로고    scopus 로고
    • Shotgun sequencing
    • In , Edited by B. Birren, E.D. Green, S. Klapholz, R.M. Myers, and J. Roskams, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
    • Wilson, R., and Mardis, E. 1997. Shotgun sequencing. In Analyzing DNA. Edited by B. Birren, E.D. Green, S. Klapholz, R.M. Myers, and J. Roskams. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. pp.397-454.
    • (1997) Analyzing DNA , pp. 397-454
    • Wilson, R.1    Mardis, E.2
  • 38
    • 0035923510 scopus 로고    scopus 로고
    • Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
    • Witte, C.P., Le, Q.H., Bureau, T., and Kumar, A. 2001. Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc. Natl. Acad. Sci. U.S.A. 98(24): 13778-13783.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , Issue.24 , pp. 13778-13783
    • Witte, C.P.1    Le, Q.H.2    Bureau, T.3    Kumar, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.