-
1
-
-
0034830923
-
Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants
-
Beguiristain, T., Grandbastien, M.A., Puigdomènech, P., and Casacuberta, J.M. 2001. Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants. Plant Physiol. 127(1): 212-221.
-
(2001)
Plant Physiol.
, vol.127
, Issue.1
, pp. 212-221
-
-
Beguiristain, T.1
Grandbastien, M.A.2
Puigdomènech, P.3
Casacuberta, J.M.4
-
2
-
-
0024470037
-
Transcription and reverse transcription of retrotransposons
-
Boeke, J.D., and Corces, V.G. 1989. Transcription and reverse transcription of retrotransposons. Annu. Rev. Microbiol. 43(1): 403-434.
-
(1989)
Annu. Rev. Microbiol.
, vol.43
, Issue.1
, pp. 403-434
-
-
Boeke, J.D.1
Corces, V.G.2
-
3
-
-
0007386676
-
Nuclear DNA changes within Helianthus annuus L.: Origin and control mechanism
-
Cavallini, A., Zolfino, C., Natali, L., Cionini, G., and Cionini, P.G. 1986. Nuclear DNA changes within Helianthus annuus L.: origin and control mechanism. Theor. Appl. Genet. 73: 20-26.
-
(1986)
Theor. Appl. Genet.
, vol.73
, pp. 20-26
-
-
Cavallini, A.1
Zolfino, C.2
Natali, L.3
Cionini, G.4
Cionini, P.G.5
-
4
-
-
0000479431
-
Isolation of plant DNA from fresh tissue
-
Doyle, J.J., and Doyle, J.L. 1989. Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
-
(1989)
Focus
, vol.12
, pp. 13-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
5
-
-
0000122573
-
PHYLIP: Phylogeny inference package
-
Felsenstein, J. 1989. PHYLIP: phylogeny inference package. Cladistics, 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
6
-
-
0026741959
-
Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants
-
Flavell, A.J., Dunbar, E., Anderson, R., Pearce, S.R., Hartley, R., and Kumar, A. 1992. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res. 20(14): 3639-3644.
-
(1992)
Nucleic Acids Res.
, vol.20
, Issue.14
, pp. 3639-3644
-
-
Flavell, A.J.1
Dunbar, E.2
Anderson, R.3
Pearce, S.R.4
Hartley, R.5
Kumar, A.6
-
7
-
-
0034943374
-
Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifers
-
Friesen, N., Brandes, A., and Heslop-Harrison, J.S. 2001. Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifers. Mol. Biol. Evol. 18(7): 1176-1188.
-
(2001)
Mol. Biol. Evol.
, vol.18
, Issue.7
, pp. 1176-1188
-
-
Friesen, N.1
Brandes, A.2
Heslop-Harrison, J.S.3
-
8
-
-
0035718006
-
A bacterial artificial chromosome (BAC) library for sunflower, and identification of clones containing genes for putative transmembrane receptors
-
Gentzbittel, L., Abbott, A., Galaud, J.P., Georgi, L., Fabre, F., Liboz, T., and Alibert, G. 2002. A bacterial artificial chromosome (BAC) library for sunflower, and identification of clones containing genes for putative transmembrane receptors. Mol. Genet. Genomics, 266(6): 979-987.
-
(2002)
Mol. Genet. Genomics
, vol.266
, Issue.6
, pp. 979-987
-
-
Gentzbittel, L.1
Abbott, A.2
Galaud, J.P.3
Georgi, L.4
Fabre, F.5
Liboz, T.6
Alibert, G.7
-
9
-
-
0041707630
-
Analysis of a dehydrin encoding gene and its phylogenetic utility in Helianthus
-
Giordani, T., Natali, L., and Cavallini, A. 2003. Analysis of a dehydrin encoding gene and its phylogenetic utility in Helianthus. Theor. Appl. Genet. 107(2): 316-325.
-
(2003)
Theor. Appl. Genet.
, vol.107
, Issue.2
, pp. 316-325
-
-
Giordani, T.1
Natali, L.2
Cavallini, A.3
-
10
-
-
0032080772
-
Activation of plant retrotransposons under stress conditions
-
Grandbastien, M.A. 1998. Activation of plant retrotransposons under stress conditions. Trends Plant Sci. 3(5): 181-187.
-
(1998)
Trends Plant Sci.
, vol.3
, Issue.5
, pp. 181-187
-
-
Grandbastien, M.A.1
-
11
-
-
0024978849
-
Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
-
Grandbastien, M.A., Spielmann, A., and Caboche, M. 1989. Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature, 337(6205): 376-380.
-
(1989)
Nature
, vol.337
, Issue.6205
, pp. 376-380
-
-
Grandbastien, M.A.1
Spielmann, A.2
Caboche, M.3
-
12
-
-
37249085596
-
Selective sweeps in the homoploid hybrid species Helianthus deserticola: Evolution in concert across populations and across origins
-
Gross, B.L., Turner, K.G., and Rieseberg, L.H. 2007. Selective sweeps in the homoploid hybrid species Helianthus deserticola: evolution in concert across populations and across origins. Mol. Ecol. 16(24): 5246-5258.
-
(2007)
Mol. Ecol.
, vol.16
, Issue.24
, pp. 5246-5258
-
-
Gross, B.L.1
Turner, K.G.2
Rieseberg, L.H.3
-
13
-
-
0032918558
-
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
-
Higo, K., Ugawa, Y., Iwamoto, M., and Korenaga, T. 1999. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 27(1): 297-300.
-
(1999)
Nucleic Acids Res.
, vol.27
, Issue.1
, pp. 297-300
-
-
Higo, K.1
Ugawa, Y.2
Iwamoto, M.3
Korenaga, T.4
-
14
-
-
0029824259
-
Retrotransposons of rice involved in mutations induced by tissue culture
-
Hirochika, H., Sugimoto, K., Otsuki, Y., Tsugawa, H., and Kanda, M. 1996. Retrotransposons of rice involved in mutations induced by tissue culture. Proc. Natl. Acad. Sci. U.S.A. 93(15): 7783-7788.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, Issue.15
, pp. 7783-7788
-
-
Hirochika, H.1
Sugimoto, K.2
Otsuki, Y.3
Tsugawa, H.4
Kanda, M.5
-
15
-
-
0037267048
-
Whole-genome sequence assembly for mammalian genomes: Arachne 2
-
Jaffe, D.B., Butler, J., Gnerre, S., Mauceli, E., Lindblad-Toh, K., Mesirov, J.P., et al. 2003. Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res. 13(1): 91-96.
-
(2003)
Genome Res.
, vol.13
, Issue.1
, pp. 91-96
-
-
Jaffe, D.B.1
Butler, J.2
Gnerre, S.3
Mauceli, E.4
Lindblad-Toh, K.5
Mesirov, J.P.6
-
16
-
-
1942421723
-
Large retrotransposon derivatives: Abundant, conserved but nonautonomous retroelements of barley and related genomes
-
Kalendar, R., Vicient, C.M., Peleg, O., Anamthawat-Jonsson, K., Bolshoy, A., and Schulman, A.H. 2004. Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics, 166(3): 1437-1450.
-
(2004)
Genetics
, vol.166
, Issue.3
, pp. 1437-1450
-
-
Kalendar, R.1
Vicient, C.M.2
Peleg, O.3
Anamthawat-Jonsson, K.4
Bolshoy, A.5
Schulman, A.H.6
-
17
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16(2): 111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, Issue.2
, pp. 111-120
-
-
Kimura, M.1
-
18
-
-
0023654956
-
Improved method for the isolation of RNA from plant tissues
-
Logemann, J., Schell, J., and Willmitzer, L. 1987. Improved method for the isolation of RNA from plant tissues. Anal. Biochem. 163(1): 16-20.
-
(1987)
Anal. Biochem.
, vol.163
, Issue.1
, pp. 16-20
-
-
Logemann, J.1
Schell, J.2
Willmitzer, L.3
-
19
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
Ma, J., and Bennetzen, J.L. 2004. Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. U.S.A. 101(34): 12404-12410.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, Issue.34
, pp. 12404-12410
-
-
Ma, J.1
Bennetzen, J.L.2
-
20
-
-
0033867739
-
MarY1, a member of the gypsy group of long terminal repeat retroelements from the ectomycorrhizal basidiomycete Tricholoma matsutake
-
Murata, H., and Yamada, A. 2000. marY1, a member of the gypsy group of long terminal repeat retroelements from the ectomycorrhizal basidiomycete Tricholoma matsutake. Appl. Environ. Microbiol. 66(8): 3642-3645.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, Issue.8
, pp. 3642-3645
-
-
Murata, H.1
Yamada, A.2
-
21
-
-
33644947611
-
Distribution of Ty3-gypsy- and Ty1-copia-like DNA sequences in the genus Helianthus and other Asteraceae
-
Natali, L., Santini, S., Giordani, T., Minelli, S., Maestrini, P., Cionini, P.G., and Cavallini, A. 2006. Distribution of Ty3-gypsy- and Ty1-copia-like DNA sequences in the genus Helianthus and other Asteraceae. Genome, 49(1): 64-72.
-
(2006)
Genome
, vol.49
, Issue.1
, pp. 64-72
-
-
Natali, L.1
Santini, S.2
Giordani, T.3
Minelli, S.4
Maestrini, P.5
Cionini, P.G.6
Cavallini, A.7
-
23
-
-
37449001326
-
Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light
-
Ramallo, E., Kalendar, R., Schulman, A.H., and Martínez-Izquierdo, J.A. 2008. Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light. Plant Mol. Biol. 66(1-2): 137-150.
-
(2008)
Plant Mol. Biol.
, vol.66
, Issue.1-2
, pp. 137-150
-
-
Ramallo, E.1
Kalendar, R.2
Schulman, A.H.3
Martínez-Izquierdo, J.A.4
-
24
-
-
0035400605
-
Chromosomal rearrangements and speciation
-
Rieseberg, L.H. 2001. Chromosomal rearrangements and speciation. Trends Ecol. Evol. 16(7): 351-358.
-
(2001)
Trends Ecol. Evol.
, vol.16
, Issue.7
, pp. 351-358
-
-
Rieseberg, L.H.1
-
25
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
Rozas, J., and Rozas, R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics, 15(2): 174-175.
-
(1999)
Bioinformatics
, vol.15
, Issue.2
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
26
-
-
12244265085
-
Ty1/copia- and Ty3/gypsy-like DNA sequences in Helianthus species
-
Santini, S., Cavallini, A., Natali, L., Minelli, S., Maggini, F., and Cionini, P.G. 2002. Ty1/copia- and Ty3/gypsy-like DNA sequences in Helianthus species. Chromosoma, 111(3): 192-200.
-
(2002)
Chromosoma
, vol.111
, Issue.3
, pp. 192-200
-
-
Santini, S.1
Cavallini, A.2
Natali, L.3
Minelli, S.4
Maggini, F.5
Cionini, P.G.6
-
27
-
-
0031005443
-
Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data
-
Schilling, E.E. 1997. Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data. Theor. Appl. Genet. 94(6-7): 925-933.
-
(1997)
Theor. Appl. Genet.
, vol.94
, Issue.6-7
, pp. 925-933
-
-
Schilling, E.E.1
-
28
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene
-
GC1-GC10
-
Sonnhammer, E.L., and Durbin, R. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene, 167(1-2): GC1-GC10.
-
(1995)
, vol.167
, Issue.1-2
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
29
-
-
0036945043
-
Genomic and chromosomal organization of Ty1-copia-like sequences in Olea europaea and evolutionary relationships of Olea retroelements
-
Stergiou, G., Katsiotis, A., Hagidimitriou, M., and Loukas, M. 2002. Genomic and chromosomal organization of Ty1-copia-like sequences in Olea europaea and evolutionary relationships of Olea retroelements. Theor. Appl. Genet. 104(6-7): 926-933.
-
(2002)
Theor. Appl. Genet.
, vol.104
, Issue.6-7
, pp. 926-933
-
-
Stergiou, G.1
Katsiotis, A.2
Hagidimitriou, M.3
Loukas, M.4
-
30
-
-
0034488740
-
MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes
-
Sugimoto, K., Takeda, S., and Hirochika, H. 2000. MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes. Plant Cell, 12(12): 2511-2528.
-
(2000)
Plant Cell
, vol.12
, Issue.12
, pp. 2511-2528
-
-
Sugimoto, K.1
Takeda, S.2
Hirochika, H.3
-
31
-
-
0032033103
-
Gypsy-like retrotransposons are widespread in the plant kingdom
-
Suoniemi, A., Tanskanen, J., and Schulman, A.H. 1998. Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J. 13(5): 699-705.
-
(1998)
Plant J.
, vol.13
, Issue.5
, pp. 699-705
-
-
Suoniemi, A.1
Tanskanen, J.2
Schulman, A.H.3
-
32
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22): 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
33750018038
-
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
-
Ungerer, M.C., Strakosh, S.C., and Zhen, Y. 2006. Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr. Biol. 16(20): R872-R873.
-
(2006)
Curr. Biol.
, vol.16
, Issue.20
-
-
Ungerer, M.C.1
Strakosh, S.C.2
Zhen, Y.3
-
34
-
-
0002915381
-
Retroviruses
-
In Mobile DNA. Edited by D.E. Berg and M.M. Howe, Washington, D.C
-
Varmus, H., and Brown, P. 1989. Retroviruses. In Mobile DNA. Edited by D.E. Berg and M.M. Howe. American Society for Microbiology, Washington, D.C. pp.53-108.
-
(1989)
American Society for Microbiology
, pp. 53-108
-
-
Varmus, H.1
Brown, P.2
-
35
-
-
33845186134
-
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
-
Vitte, C., and Bennetzen, J.L. 2006. Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc. Natl. Acad. Sci. U.S.A. 103(47): 17638-17643.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, Issue.47
, pp. 17638-17643
-
-
Vitte, C.1
Bennetzen, J.L.2
-
36
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J.L., Capy, P., Chalhoub, B., et al. 2007. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8(12): 973-982.
-
(2007)
Nat. Rev. Genet.
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
-
37
-
-
0000465745
-
Shotgun sequencing
-
In , Edited by B. Birren, E.D. Green, S. Klapholz, R.M. Myers, and J. Roskams, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
-
Wilson, R., and Mardis, E. 1997. Shotgun sequencing. In Analyzing DNA. Edited by B. Birren, E.D. Green, S. Klapholz, R.M. Myers, and J. Roskams. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. pp.397-454.
-
(1997)
Analyzing DNA
, pp. 397-454
-
-
Wilson, R.1
Mardis, E.2
-
38
-
-
0035923510
-
Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
-
Witte, C.P., Le, Q.H., Bureau, T., and Kumar, A. 2001. Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc. Natl. Acad. Sci. U.S.A. 98(24): 13778-13783.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, Issue.24
, pp. 13778-13783
-
-
Witte, C.P.1
Le, Q.H.2
Bureau, T.3
Kumar, A.4
|