-
1
-
-
0021342870
-
Cluster of cases of the acquired immune deficiency syndrome
-
Auerbach, D. M., W. W. Darrow, H. W. Jaffe, and J. W. Curran. 1984. Cluster of cases of the acquired immune deficiency syndrome. Am. J. Med. 76:487-492.
-
(1984)
Am. J. Med.
, vol.76
, pp. 487-492
-
-
Auerbach, D.M.1
Darrow, W.W.2
Jaffe, H.W.3
Curran, J.W.4
-
2
-
-
0028828669
-
Detection of diverse subtypes in the USA
-
Brodin, S. K., J. R. Mascola, P. J. Weiss, S. I. Ito, K. R. Porter, A. W. Artenstein, F. C. Garland, F. E. McCutchan, and D. S. Burke. 1995. Detection of diverse subtypes in the USA. Lancet 346:1198-1199.
-
(1995)
Lancet
, vol.346
, pp. 1198-1199
-
-
Brodin, S.K.1
Mascola, J.R.2
Weiss, P.J.3
Ito, S.I.4
Porter, K.R.5
Artenstein, A.W.6
Garland, F.C.7
McCutchan, F.E.8
Burke, D.S.9
-
3
-
-
0000888390
-
Pneumocystis pneumonia-Los Angeles
-
Centers for Disease Control and Prevention. 1981. Pneumocystis pneumonia-Los Angeles. Morb. Mortal. Wkly. Rep. 30:1-3.
-
(1981)
Morb. Mortal. Wkly. Rep.
, vol.30
, pp. 1-3
-
-
-
4
-
-
0035379083
-
HIV/AIDS - United States, 1981-2000
-
Centers for Disease Control and Prevention. 2001. HIV/AIDS - United States, 1981-2000. Morb. Mortal. Wkly. Rep. 50:430-433.
-
(2001)
Morb. Mortal. Wkly. Rep.
, vol.50
, pp. 430-433
-
-
-
5
-
-
0027690383
-
Genetic relationships determined by a heteroduplex mobility assay: Analysis of HIV env genes
-
Delwart, E. L., E. G. Shpaer, F. E. McCutchan, J. Louwagie, M. Grez, H. Rubsamen-Waigmann, and J. I. Mullins. 1993. Genetic relationships determined by a heteroduplex mobility assay: analysis of HIV env genes. Science 262:1257-1261.
-
(1993)
Science
, vol.262
, pp. 1257-1261
-
-
Delwart, E.L.1
Shpaer, E.G.2
McCutchan, F.E.3
Louwagie, J.4
Grez, M.5
Rubsamen-Waigmann, H.6
Mullins, J.I.7
-
6
-
-
0038746995
-
The heterogeneity and pathogenicity of HIV
-
W. J. W. Morrow and N. L. Haigwood (ed.). Elsevier, Amserdam, The Netherlands
-
Evans, L. A., and J. A. Levy. 1993. The heterogeneity and pathogenicity of HIV, p. 29-73. In W. J. W. Morrow and N. L. Haigwood (ed.), HIV molecular organization, pathogenicity and treatment. Elsevier, Amserdam, The Netherlands.
-
(1993)
HIV Molecular Organization, Pathogenicity and Treatment
, pp. 29-73
-
-
Evans, L.A.1
Levy, J.A.2
-
7
-
-
0034633731
-
Apparent founder effect during the early years of the San Francisco HIV type 1 epidemic (1978-1979)
-
Foley, B., H. Pan, S. Buchbinder, and E. L. Delwart. 2000. Apparent founder effect during the early years of the San Francisco HIV type 1 epidemic (1978-1979). AIDS Res. Hum. Retrovir. 16:1463-1469.
-
(2000)
AIDS Res. Hum. Retrovir.
, vol.16
, pp. 1463-1469
-
-
Foley, B.1
Pan, H.2
Buchbinder, S.3
Delwart, E.L.4
-
8
-
-
0034625255
-
Origins of HIV
-
Hillis, D. M. 2000. Origins of HIV. Science 288:1757-1759.
-
(2000)
Science
, vol.288
, pp. 1757-1759
-
-
Hillis, D.M.1
-
9
-
-
0002277392
-
The molecular population dynamics of HIV-1
-
K. A. Crandall (ed.). The Johns Hopkins University Press, Baltimore, Md
-
Holmes, E. C., O. G. Pybus, and P. H. Harvey. 1999. The molecular population dynamics of HIV-1, p. 177-207. In K. A. Crandall (ed.), The evolution of HIV. The Johns Hopkins University Press, Baltimore, Md.
-
(1999)
The Evolution of HIV
, pp. 177-207
-
-
Holmes, E.C.1
Pybus, O.G.2
Harvey, P.H.3
-
10
-
-
0004205360
-
-
Little, Brown & Co., Boston, Mass
-
Hooper, E. 1999. In The river, p. 77-82; 440-443. Little, Brown & Co., Boston, Mass.
-
(1999)
The River
, pp. 77-82
-
-
Hooper, E.1
-
11
-
-
13344278708
-
The emerging genetic diversity of HIV
-
Hu, D. J., T. J. Dondero, M. A. Rayfield, J. R. George, G. Schochetman, H. W. Jaffe, C.-C. Luo, M. L. Kalish, B. G. Weniger, C.-P. Pau, C. A. Schable, and J. W. Curran. 1996. The emerging genetic diversity of HIV. JAMA 275:210-216.
-
(1996)
JAMA
, vol.275
, pp. 210-216
-
-
Hu, D.J.1
Dondero, T.J.2
Rayfield, M.A.3
George, J.R.4
Schochetman, G.5
Jaffe, H.W.6
Luo, C.-C.7
Kalish, M.L.8
Weniger, B.G.9
Pau, C.-P.10
Schable, C.A.11
Curran, J.W.12
-
12
-
-
0030707908
-
Presence of human immunodeficiency virus (HIV) type 1 subtype A infection in a New York community with high HIV prevalence
-
Irwin, K. L., C.-P. Pau, D. Lupo, D. Pienazek, C.-C. Luo, N. Olivo, M. Rayfield, D. J. Hu, J. T. Weber, R. A. Respess, R. Janssen, P. Minor, and J. Ernst. 1997. Presence of human immunodeficiency virus (HIV) type 1 subtype A infection in a New York community with high HIV prevalence. J. Infect. Dis. 176:1629-1633.
-
(1997)
J. Infect. Dis.
, vol.176
, pp. 1629-1633
-
-
Irwin, K.L.1
Pau, C.-P.2
Lupo, D.3
Pienazek, D.4
Luo, C.-C.5
Olivo, N.6
Rayfield, M.7
Hu, D.J.8
Weber, J.T.9
Respess, R.A.10
Janssen, R.11
Minor, P.12
Ernst, J.13
-
13
-
-
0020507962
-
National case-control study of Kaposi's sarcoma and Pneumocystis carinii pneumonia in homosexual men: Part 1, epidemiologic results
-
Jaffe, H. W., K. Choi, P. A. Thomas, H. W. Haverkos, D. M. Auerbach, M. E. Guinan, M. F. Rogers, T. J. Spira, W. W. Darrow, M. A. Kramer, S. M. Friedman, J. M. Monroe, A. E. Friedman-Kien, L. J. Laubenstein, M. Marmor, B. Safai, S. K. Dritz, S. J. Criopi, S. L. Fannin, J. P. Orkwis, A, Kelter, W. R. Rushing, S. B. Thacker, and J. W. Curran. 1983. National case-control study of Kaposi's sarcoma and Pneumocystis carinii pneumonia in homosexual men: part 1, epidemiologic results. Ann. Int. Med. 99:145-151.
-
(1983)
Ann. Int. Med.
, vol.99
, pp. 145-151
-
-
Jaffe, H.W.1
Choi, K.2
Thomas, P.A.3
Haverkos, H.W.4
Auerbach, D.M.5
Guinan, M.E.6
Rogers, M.F.7
Spira, T.J.8
Darrow, W.W.9
Kramer, M.A.10
Friedman, S.M.11
Monroe, J.M.12
Friedman-Kien, A.E.13
Laubenstein, L.J.14
Marmor, M.15
Safai, B.16
Dritz, S.K.17
Criopi, S.J.18
Fannin, S.L.19
Orkwis, J.P.20
Kelter, A.21
Rushing, W.R.22
Thacker, S.B.23
Curran, J.W.24
more..
-
15
-
-
0032546809
-
Limitations of a molecular clock applied to considerations of the origin of HIV-1
-
Korber, B., J. Theiler, and S. Wolinsky. 1998. Limitations of a molecular clock applied to considerations of the origin of HIV-1. Science 280:1868-1871.
-
(1998)
Science
, vol.280
, pp. 1868-1871
-
-
Korber, B.1
Theiler, J.2
Wolinsky, S.3
-
16
-
-
0034625771
-
Timing the ancestor of the HIV-1 pandemic strains
-
Korber, B., M. Muldoon, J. Theiler, F. Gao, R. Gupta, A. Lapedes, B. H. Hahn, S. Wolinsky, and T. Bhattacharya. 2000. Timing the ancestor of the HIV-1 pandemic strains. Science 288:1789-1796.
-
(2000)
Science
, vol.288
, pp. 1789-1796
-
-
Korber, B.1
Muldoon, M.2
Theiler, J.3
Gao, F.4
Gupta, R.5
Lapedes, A.6
Hahn, B.H.7
Wolinsky, S.8
Bhattacharya, T.9
-
17
-
-
0031655814
-
Genotyping HIV-1 and HCV strains by a combinatorial DNA melting assay (COMA)
-
Kostrikis, L. G., S. Shin, and D. H. Ho. 1998. Genotyping HIV-1 and HCV strains by a combinatorial DNA melting assay (COMA). Mol. Med. 4:443-453.
-
(1998)
Mol. Med.
, vol.4
, pp. 443-453
-
-
Kostrikis, L.G.1
Shin, S.2
Ho, D.H.3
-
18
-
-
0027436702
-
Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic
-
Kuiken, C. L., G. Zwart, E. Baan, R. A. Coutinho, J. A. R. van den Hoek, and J. Goudsmit. 1993. Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic. Proc. Natl. Acad. Sci. USA 90:9061-9065.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 9061-9065
-
-
Kuiken, C.L.1
Zwart, G.2
Baan, E.3
Coutinho, R.A.4
Van den Hoek, J.A.R.5
Goudsmit, J.6
-
19
-
-
0034331207
-
Genetic analysis reveals epidemiologic patterns in the spread of human immunodeficiency virus
-
Kuiken, C., R. Thakallapalli, A. Eskild, and A. de Ronde. 2000. Genetic analysis reveals epidemiologic patterns in the spread of human immunodeficiency virus. Am. J. Epidemiol. 152:814-822.
-
(2000)
Am. J. Epidemiol.
, vol.152
, pp. 814-822
-
-
Kuiken, C.1
Thakallapalli, R.2
Eskild, A.3
De Ronde, A.4
-
20
-
-
0003507758
-
-
Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.Mex
-
Kuiken, C. L., B. Foley, B. Hahn, B. Korber, F. McCutchan, P. A. Marx, J. W. Mellors, J. I. Mullins, J. Sodroski, and S. Wolinsky (ed). 2000. Human retroviruses and AIDS 2000: a compilation and analysis of nucleic acid and amino acid sequences. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.Mex.
-
(2000)
Human Retroviruses and AIDS 2000: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences
-
-
Kuiken, C.L.1
Foley, B.2
Hahn, B.3
Korber, B.4
McCutchan, F.5
Marx, P.A.6
Mellors, J.W.7
Mullins, J.I.8
Sodroski, J.9
Wolinsky, S.10
-
21
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave, C., G. Preparata, C. Saccone, and G. Serio. 1984. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20:86-93.
-
(1984)
J. Mol. Evol.
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
22
-
-
0021090519
-
AIDS in Haitian immigrants and in a Caucasian woman closely associated with Haitians
-
Laverdiere, M., J. Tremblay, R. Lavallee, Y. Bonny, M. Lacombe, J. Boileau, J. Lachapelle, and C. Lamoureux. 1983. AIDS in Haitian immigrants and in a Caucasian woman closely associated with Haitians. Can. Med. Assoc. J. 129:1209-1212.
-
(1983)
Can. Med. Assoc. J.
, vol.129
, pp. 1209-1212
-
-
Laverdiere, M.1
Tremblay, J.2
Lavallee, R.3
Bonny, Y.4
Lacombe, M.5
Boileau, J.6
Lachapelle, J.7
Lamoureux, C.8
-
23
-
-
0029744336
-
Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis
-
Leitner, T., D. Ecanilla, C. Franzen, M. Uhlen, and J. Albert. 1996. Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis. Proc. Natl. Acad. Sci. USA 93:10864-10869.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10864-10869
-
-
Leitner, T.1
Ecanilla, D.2
Franzen, C.3
Uhlen, M.4
Albert, J.5
-
24
-
-
0019774135
-
An outbreak of community-acquired Pneumocystis carinii pneumonia: Initial manifestation of cellular immune dysfunction
-
Masur, H., M. A. Michelis, J. B. Greene, I. Onorato, R. A. Stouwe, R. S. Holzman, G. Wormser, L. Brettman, M. Lang, H. W. Murray, and S. Cunningham-Rundles. 1981. An outbreak of community-acquired Pneumocystis carinii pneumonia: initial manifestation of cellular immune dysfunction. N. Engl. J. Med. 305:1431-1438.
-
(1981)
N. Engl. J. Med.
, vol.305
, pp. 1431-1438
-
-
Masur, H.1
Michelis, M.A.2
Greene, J.B.3
Onorato, I.4
Stouwe, R.A.5
Holzman, R.S.6
Wormser, G.7
Brettman, L.8
Lang, M.9
Murray, H.W.10
Cunningham-Rundles, S.11
-
25
-
-
0028125063
-
Tenth anniversary perspectives on AIDS. HIV: Between past and future
-
Myers, G. 1994. Tenth anniversary perspectives on AIDS. HIV: between past and future. AIDS Res. Hum. Retrovir. 10:1317-1324.
-
(1994)
AIDS Res. Hum. Retrovir.
, vol.10
, pp. 1317-1324
-
-
Myers, G.1
-
26
-
-
85044684832
-
Another case of AIDS in the pre-AIDS era
-
Noel, G. E. 1988. Another case of AIDS in the pre-AIDS era. Rev. Infect. Dis. 10:688-689.
-
(1988)
Rev. Infect. Dis.
, vol.10
, pp. 688-689
-
-
Noel, G.E.1
-
27
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
28
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus, O. G., A. Rambaut, and P. H. Harvey. 2000. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155:1429-1437.
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
29
-
-
0035933522
-
The epidemic behavior of the hepatitis C virus
-
Pybus, O. G., M. A. Charleston, S. Gupta, A. Rambaut, E. C. Holmes, and P. H. Harvey. 2001. The epidemic behavior of the hepatitis C virus. Science 292:2323-2325.
-
(2001)
Science
, vol.292
, pp. 2323-2325
-
-
Pybus, O.G.1
Charleston, M.A.2
Gupta, S.3
Rambaut, A.4
Holmes, E.C.5
Harvey, P.H.6
-
30
-
-
0036773016
-
GENIE: Estimating demographic history from molecular phylogenies
-
Pybus, O. G., and A. Rambaut. 2002. GENIE: estimating demographic history from molecular phylogenies. Bioinformatics 18:1404-1405.
-
(2002)
Bioinformatics
, vol.18
, pp. 1404-1405
-
-
Pybus, O.G.1
Rambaut, A.2
-
31
-
-
0034044313
-
Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies
-
Rambaut, A. 2000. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16:395-399.
-
(2000)
Bioinformatics
, vol.16
, pp. 395-399
-
-
Rambaut, A.1
-
32
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut, A., and N. C. Grassly. 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
33
-
-
0034124124
-
Detecting hypermutations in viral sequences with an emphasis on G→A hypermutation
-
Rose, P. P., and B. T. Korber. 2000. Detecting hypermutations in viral sequences with an emphasis on G→A hypermutation. Bioinformatics 16:400-401.
-
(2000)
Bioinformatics
, vol.16
, pp. 400-401
-
-
Rose, P.P.1
Korber, B.T.2
-
34
-
-
0035261070
-
Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes by using a new method to uncover clock-like molecular evolution
-
Salemi, M., K. Strimmer, W. W. Hall, M. Duffy, E. Delaporte, S. Mboup, M. Peters, and A.-M. Vandamme. 2001. Dating the common ancestor of SIVcpz and HIV-1 group M and the origin of HIV-1 subtypes by using a new method to uncover clock-like molecular evolution. FASEB J. 15:276-278.
-
(2001)
FASEB J.
, vol.15
, pp. 276-278
-
-
Salemi, M.1
Strimmer, K.2
Hall, W.W.3
Duffy, M.4
Delaporte, E.5
Mboup, S.6
Peters, M.7
Vandamme, A.-M.8
-
35
-
-
85160165216
-
Methods for studying genetic variation of the human immunodeficiency virus
-
K. A. Adolph (ed.). CRC Press Inc., Boca Raton, Fla
-
Schochetman, G. S., S. Subbarao, and M. L. Kalish. 1996. Methods for studying genetic variation of the human immunodeficiency virus, 25-41. In K. A. Adolph (ed.), Viral genome methods. CRC Press Inc., Boca Raton, Fla.
-
(1996)
Viral Genome Methods
, pp. 25-41
-
-
Schochetman, G.S.1
Subbarao, S.2
Kalish, M.L.3
-
36
-
-
0021337815
-
Aquired immune deficiency syndrome (AIDS) trends in the United States, 1978-1982
-
Selik, R. M., H. W. Haverkos, and J. W. Curran. 1984. Aquired immune deficiency syndrome (AIDS) trends in the United States, 1978-1982. Am. J. Med. 76:491-500.
-
(1984)
Am. J. Med.
, vol.76
, pp. 491-500
-
-
Selik, R.M.1
Haverkos, H.W.2
Curran, J.W.3
-
37
-
-
0000203089
-
Origins and diversity of human immunodeficiency viruses
-
Sharp, P. M., D. L. Robertson, F. Gao, and B. H. Hahn. 1994. Origins and diversity of human immunodeficiency viruses. AIDS 8:S27-S43.
-
(1994)
AIDS
, vol.8
-
-
Sharp, P.M.1
Robertson, D.L.2
Gao, F.3
Hahn, B.H.4
-
38
-
-
0034005844
-
Human immunodeficiency virus (HIV) subtype surveillance of African-born persons at risk for group O and group N HIV infections in the United States
-
Sullivan, P. S., A. N. Do, D. Ellenberger, C.-P. Pau, S. Paul, K. Robbins, M. Kalish, C. Storck, C. A. Schable, H. Wise, C. Tetteh, J. I. Jones, J. McFarland, C. Yang, R. B. Lal, and J. W. Ward. 2000. Human immunodeficiency virus (HIV) subtype surveillance of African-born persons at risk for group O and group N HIV infections in the United States. J. Infect. Dis. 181:463-469.
-
(2000)
J. Infect. Dis.
, vol.181
, pp. 463-469
-
-
Sullivan, P.S.1
Do, A.N.2
Ellenberger, D.3
Pau, C.-P.4
Paul, S.5
Robbins, K.6
Kalish, M.7
Storck, C.8
Schable, C.A.9
Wise, H.10
Tetteh, C.11
Jones, J.I.12
McFarland, J.13
Yang, C.14
Lal, R.B.15
Ward, J.W.16
-
40
-
-
0023767166
-
HIV infection in hetero-sexual female intravenous drug users in New York City, 1977-1980
-
Thomas, P., R. O'Donnel, R. Williams, and M. A. Chiasson. 1988. HIV infection in hetero-sexual female intravenous drug users in New York City, 1977-1980. N. Engl. J. Med. 319:374.
-
(1988)
N. Engl. J. Med.
, vol.319
, pp. 374
-
-
Thomas, P.1
O'Donnel, R.2
Williams, R.3
Chiasson, M.A.4
-
42
-
-
0030683599
-
PAML: A program for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program for phylogenetic analysis by maximum likelihood. Comput. Appl. Biol. Sci. 13:555-556.
-
(1997)
Comput. Appl. Biol. Sci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
43
-
-
0035967994
-
Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution
-
Yusim, K., M. Peeters, O. G. Pybus, T. Bhattacharya, E. Delaporte, C. Mulanga, M. Muldoon, J. Theiler, and B. Korber. 2001. Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. Philos. Trans. R. Soc. Lond. B 356:855-866.
-
(2001)
Philos. Trans. R. Soc. Lond. B
, vol.356
, pp. 855-866
-
-
Yusim, K.1
Peeters, M.2
Pybus, O.G.3
Bhattacharya, T.4
Delaporte, E.5
Mulanga, C.6
Muldoon, M.7
Theiler, J.8
Korber, B.9
-
44
-
-
0032484908
-
An African HIV-1 sequence from 1959 and implications for the origin of the epidemic
-
Zhu, T., B. T. Korber, A. J. Nahmias, E. Hooper, P. M. Sharp, and D. D. Ho. 1998. An African HIV-1 sequence from 1959 and implications for the origin of the epidemic. Nature 391:594-597.
-
(1998)
Nature
, vol.391
, pp. 594-597
-
-
Zhu, T.1
Korber, B.T.2
Nahmias, A.J.3
Hooper, E.4
Sharp, P.M.5
Ho, D.D.6
|