메뉴 건너뛰기




Volumn 53, Issue 4, 2004, Pages 623-637

Tracing the decay of the historical signal in biological sequence data

Author keywords

Compositional heterogeneity; Edge lengths; Monte Carlo simulation; Networks; Phylogenetic signal; Rate heterogeneity; Substitutional saturation

Indexed keywords

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMAL; ARTICLE; BIOLOGICAL MODEL; COMPARATIVE STUDY; COMPUTER SIMULATION; MONTE CARLO METHOD; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT;

EID: 4644252702     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150490503035     Document Type: Article
Times cited : (131)

References (65)
  • 1
    • 0031714828 scopus 로고    scopus 로고
    • Accelerated evolution of cytochrome b in simian primates: Adaptive evolution in concert with other mitochondrial proteins?
    • Andrews, T. D., L. S. Jermiin, and S. Easteal. 1998. Accelerated evolution of cytochrome b in simian primates: Adaptive evolution in concert with other mitochondrial proteins? J. Mol. Evol. 47:249-257.
    • (1998) J. Mol. Evol. , vol.47 , pp. 249-257
    • Andrews, T.D.1    Jermiin, L.S.2    Easteal, S.3
  • 2
    • 0027138675 scopus 로고
    • Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
    • Baldauf, S. L., and J. D. Palmer. 1993. Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins. Proc. Natl Acad. Sci. U.S.A. 90:11558-11562.
    • (1993) Proc. Natl Acad. Sci. U.S.A. , vol.90 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 3
    • 0026911267 scopus 로고
    • Split decomposition: A new and useful approach to phylogenetic analysis of distance data
    • Bandelt, H.-J., and A. W. M. Dress. 1992. Split decomposition: A new and useful approach to phylogenetic analysis of distance data. Mol. Phylogenet. Evol. 1:242-252.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 242-252
    • Bandelt, H.-J.1    Dress, A.W.M.2
  • 4
    • 0032927161 scopus 로고    scopus 로고
    • Topological bias and inconsistency of maximum likelihood using wrong models
    • Bruno, W. J., and A. L. Halpern. 1999. Topological bias and inconsistency of maximum likelihood using wrong models. Mol. Biol. Evol. 16:564-566.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 564-566
    • Bruno, W.J.1    Halpern, A.L.2
  • 5
    • 0033984609 scopus 로고    scopus 로고
    • Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
    • Bruno, W. J., N. D. Socci, and A. L. Halpern. 2000. Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction. Mol. Biol. Evol. 17:189-197.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3
  • 6
    • 0033860303 scopus 로고    scopus 로고
    • Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences
    • Chang, B. S. W., and D. L. Campbell. 2000. Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences. Mol. Biol. Evol. 17:1220-1231.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1220-1231
    • Chang, B.S.W.1    Campbell, D.L.2
  • 7
    • 0029919254 scopus 로고    scopus 로고
    • Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters
    • Chang, J. T. 1996. Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters. Math. Biosci. 134:189-215.
    • (1996) Math. Biosci. , vol.134 , pp. 189-215
    • Chang, J.T.1
  • 8
    • 0034983477 scopus 로고    scopus 로고
    • Effects of nucleotide composition bias on the success of the parsimony criterion on phylogenetic inference
    • Conant, G. C., and P. O. Lewis. 2001. Effects of nucleotide composition bias on the success of the parsimony criterion on phylogenetic inference. Mol. Biol. Evol. 18:1024-1033.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1024-1033
    • Conant, G.C.1    Lewis, P.O.2
  • 9
    • 0026559592 scopus 로고
    • The consistency of several phylogeny-inference methods under varying evolutionary rates
    • DeBry, R. W. 1992. The consistency of several phylogeny-inference methods under varying evolutionary rates. Mol. Biol. Evol. 9:537-551.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 537-551
    • DeBry, R.W.1
  • 11
    • 0000074814 scopus 로고    scopus 로고
    • Likelihood and inconsistency
    • Farris, J. S. 1999. Likelihood and inconsistency. Cladistics 15:199-204.
    • (1999) Cladistics , vol.15 , pp. 199-204
    • Farris, J.S.1
  • 12
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 13
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 14
    • 0003437299 scopus 로고    scopus 로고
    • Department of Genetics, University of Washington, Seattle
    • Felsenstein, J. 2002. PHYLIP (Phylogeny Inference Package), version 3.6a3. Available from http://evolution.genetics.washington.edu/ phylip.html, Department of Genetics, University of Washington, Seattle.
    • (2002) PHYLIP (Phylogeny Inference Package), Version 3.6a3
    • Felsenstein, J.1
  • 15
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. F. 1971. Towards defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool. 20:406-416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.F.1
  • 16
    • 0023058718 scopus 로고
    • The estimate of total nucleotide substitutions from pairwise differences is biased
    • Fitch, W. F. 1986a. The estimate of total nucleotide substitutions from pairwise differences is biased. Phil. Trans. R. Soc. Lond. B 312:317-324.
    • (1986) Phil. Trans. R. Soc. Lond. B , vol.312 , pp. 317-324
    • Fitch, W.F.1
  • 17
    • 0022502392 scopus 로고
    • An estimation of the number of invariable sites is necessary for the accurate estimation of the number of nucleotide substitutions since a common ancestor
    • Fitch, W. M. 1986b. An estimation of the number of invariable sites is necessary for the accurate estimation of the number of nucleotide substitutions since a common ancestor. Prog. Clin. Biol. Res. 218:149-159.
    • (1986) Prog. Clin. Biol. Res. , vol.218 , pp. 149-159
    • Fitch, W.M.1
  • 18
    • 0028790653 scopus 로고
    • Inferring phylogenies from DNA sequences of unequal base compositions
    • Galtier, N., and M. Gouy. 1995. Inferring phylogenies from DNA sequences of unequal base compositions. Proc. Natl Acad. Sci. U.S.A. 92:11317-11321.
    • (1995) Proc. Natl Acad. Sci. U.S.A. , vol.92 , pp. 11317-11321
    • Galtier, N.1    Gouy, M.2
  • 19
    • 0031829758 scopus 로고    scopus 로고
    • Inferring pattern and process: Maximum-likelihood implementation of a nonhomogenous model of DNA sequence evolution for phylogenetic analysis
    • Galtier, N., and M. Gouy. 1998. Inferring pattern and process: Maximum-likelihood implementation of a nonhomogenous model of DNA sequence evolution for phylogenetic analysis. Mol. Biol. Evol. 15:871-879.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 871-879
    • Galtier, N.1    Gouy, M.2
  • 20
    • 0028887457 scopus 로고
    • Success of maximum likelihood phylogeny inference in the four-taxon case
    • Gaut, B. S., and P. O. Lewis. 1995. Success of maximum likelihood phylogeny inference in the four-taxon case. Mol. Biol. Evol. 12:152-162.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 152-162
    • Gaut, B.S.1    Lewis, P.O.2
  • 21
    • 0027463557 scopus 로고
    • Ribosomal RNA trees misleading?
    • Hasegawa, M., and T. Hashimoto. 1993. Ribosomal RNA trees misleading? Nature 361:23.
    • (1993) Nature , vol.361 , pp. 23
    • Hasegawa, M.1    Hashimoto, T.2
  • 22
    • 21144475766 scopus 로고
    • Spectral analysis of phylogenetic data
    • Hendy, M. D. 1993. Spectral analysis of phylogenetic data. J. Classif. 10:5-24.
    • (1993) J. Classif. , vol.10 , pp. 5-24
    • Hendy, M.D.1
  • 23
    • 0000662336 scopus 로고
    • Hadamard conjugation: A versatile tool for modelling nucleotide sequence evolution
    • Hendy, M. D., and M. A. Charleston. 1993. Hadamard conjugation: A versatile tool for modelling nucleotide sequence evolution. N. Z. J. Bot. 31:231-237.
    • (1993) N. Z. J. Bot. , vol.31 , pp. 231-237
    • Hendy, M.D.1    Charleston, M.A.2
  • 24
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy, M. D., and D. Penny. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38:297-309.
    • (1989) Syst. Zool. , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 25
    • 4644344921 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Hillis, D. M., and J. P. Huelsenbeck. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 44:17-48.
    • (1993) Syst. Biol. , vol.44 , pp. 17-48
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 26
    • 0028362880 scopus 로고
    • Application and accuracy of molecular phylogenies
    • Hillis, D. M., J. P. Huelsenbeck, and C. W. Cunningham. 1994a. Application and accuracy of molecular phylogenies. Science 264:671-677.
    • (1994) Science , vol.264 , pp. 671-677
    • Hillis, D.M.1    Huelsenbeck, J.P.2    Cunningham, C.W.3
  • 28
    • 0038632308 scopus 로고    scopus 로고
    • Outgroup misplacement and phylogenetic inaccuracy under a molecular clock - A simulation study
    • Holland, B. R., D. Penny, and M. D. Hendy. 2003. Outgroup misplacement and phylogenetic inaccuracy under a molecular clock - A simulation study. Syst. Biol. 52:229-238.
    • (2003) Syst. Biol. , vol.52 , pp. 229-238
    • Holland, B.R.1    Penny, D.2    Hendy, M.D.3
  • 29
    • 84960557134 scopus 로고
    • Tree-length distribution skewness: An indicator of phylogenetic information
    • Huelsenbeck, J. P. 1991. Tree-length distribution skewness: An indicator of phylogenetic information. Syst. Zool. 40:257-270.
    • (1991) Syst. Zool. , vol.40 , pp. 257-270
    • Huelsenbeck, J.P.1
  • 30
    • 0030994945 scopus 로고    scopus 로고
    • The partition matrix: Exploring variable phylogenetic signals along nucleotide sequence alignments
    • Jakobsen, I. B., S. R. Wilson, and S. Easteal. 1997. The partition matrix: Exploring variable phylogenetic signals along nucleotide sequence alignments. Mol. Biol. Evol. 14:474-484.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 474-484
    • Jakobsen, I.B.1    Wilson, S.R.2    Easteal, S.3
  • 31
    • 2642584187 scopus 로고    scopus 로고
    • Hetero: A program to simulate the evolution of nucleotide sequences on a binary tree with four tips
    • Jermiin, L. S., S. Y. W. Ho, F. Ababneh, J. Robinson, and A. W. D. Larkum. 2003. Hetero: A program to simulate the evolution of nucleotide sequences on a binary tree with four tips. Appl. Bioinf. 2:159-163.
    • (2003) Appl. Bioinf. , vol.2 , pp. 159-163
    • Jermiin, L.S.1    Ho, S.Y.W.2    Ababneh, F.3    Robinson, J.4    Larkum, A.W.D.5
  • 32
    • 4644299089 scopus 로고    scopus 로고
    • The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated
    • Jermiin, L. S., S. Y. W. Ho, F. Ababneh, J. Robinson, and A. W. D. Larkum. 2004. The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated. Syst. Biol. 53:638-643.
    • (2004) Syst. Biol. , vol.53 , pp. 638-643
    • Jermiin, L.S.1    Ho, S.Y.W.2    Ababneh, F.3    Robinson, J.4    Larkum, A.W.D.5
  • 33
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H. N. Munro, ed.). Academic Press, New York
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pages 21-132 in Mammalian protein metabolism (H. N. Munro, ed.). Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 34
    • 0029908930 scopus 로고    scopus 로고
    • Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family
    • Keeling, P. J., and W. F. Doolittle. 1996. Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. Mol. Biol. Evol. 13:1297-1305.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1297-1305
    • Keeling, P.J.1    Doolittle, W.F.2
  • 35
    • 0033977617 scopus 로고    scopus 로고
    • Evidence from beta-tubulin that microsporidia evolved from fungi
    • Keeling, P. J., M. A. Luker, and J. D. Palmer. 2000. Evidence from beta-tubulin that microsporidia evolved from fungi. Mol. Biol. Evol. 17:23-31.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 23-31
    • Keeling, P.J.1    Luker, M.A.2    Palmer, J.D.3
  • 36
    • 0030315308 scopus 로고    scopus 로고
    • General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa
    • Kim, J. 1996. General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa. Syst. Biol. 45:363-374.
    • (1996) Syst. Biol. , vol.45 , pp. 363-374
    • Kim, J.1
  • 37
    • 0028181246 scopus 로고
    • Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
    • Lake, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances. Proc. Natl Acad. Sci. U.S.A. 91:1155-1159.
    • (1994) Proc. Natl Acad. Sci. U.S.A. , vol.91 , pp. 1155-1159
    • Lake, J.A.1
  • 38
    • 0028891511 scopus 로고
    • Use of spectral analysis to test hypotheses on the origin of pinnipeds
    • Lento, G. M., R. E. Hickson, G. K. Chambers, and D. Penny. 1995. Use of spectral analysis to test hypotheses on the origin of pinnipeds. Mol. Biol. Evol. 12:28-52.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 28-52
    • Lento, G.M.1    Hickson, R.E.2    Chambers, G.K.3    Penny, D.4
  • 39
    • 0343807502 scopus 로고    scopus 로고
    • Tubulin genes from AIDS-associated microsporidia and implications for phylogeny and benzimidazole sensitivity
    • Li, J., K. Katiyar, A. Hamelin, G. S. Visvesvara, and T. D. Edlind. 1996. Tubulin genes from AIDS-associated microsporidia and implications for phylogeny and benzimidazole sensitivity. Mol. Biochem. Parasitol. 78:289-295.
    • (1996) Mol. Biochem. Parasitol. , vol.78 , pp. 289-295
    • Li, J.1    Katiyar, K.2    Hamelin, A.3    Visvesvara, G.S.4    Edlind, T.D.5
  • 40
    • 0023740248 scopus 로고
    • Rates and dates of divergence between AIDS virus nucleotide sequences
    • Li, W., M. Tanimura, and P. Sharp. 1988. Rates and dates of divergence between AIDS virus nucleotide sequences. Mol. Biol. Evol. 5:313-330.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 313-330
    • Li, W.1    Tanimura, M.2    Sharp, P.3
  • 41
    • 0026681831 scopus 로고
    • Substitutional bias confounds inference of cyanelle origins from sequence data
    • Lockhart, P. J., C. J. Howe, D. A. Bryant, T. J. Beanland, and A. W. D. Larkum. 1992. Substitutional bias confounds inference of cyanelle origins from sequence data. J. Mol. Evol. 34:153-162.
    • (1992) J. Mol. Evol. , vol.34 , pp. 153-162
    • Lockhart, P.J.1    Howe, C.J.2    Bryant, D.A.3    Beanland, T.J.4    Larkum, A.W.D.5
  • 42
    • 0029935637 scopus 로고    scopus 로고
    • Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
    • Lockhart, P. J., A. W. D. Larkum, M. A. Steel, P. J. Waddell, and D. Penny. 1996. Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis. Proc. Natl Acad. Sci. U.S.A. 93:1930-1934.
    • (1996) Proc. Natl Acad. Sci. U.S.A. , vol.93 , pp. 1930-1934
    • Lockhart, P.J.1    Larkum, A.W.D.2    Steel, M.A.3    Waddell, P.J.4    Penny, D.5
  • 43
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart, P. J., M. A. Steel, M. D. Hendy, and D. Penny. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 44
    • 0033844505 scopus 로고    scopus 로고
    • The evolution of base composition and phylogenetic inference
    • Mooers, A. Ø., and E. C. Holmes. 2000. The evolution of base composition and phylogenetic inference. Trends Ecol. Evol. 15:365-369.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 365-369
    • Mooers, A.Ø.1    Holmes, E.C.2
  • 45
    • 0026670564 scopus 로고
    • Testing for equality of evolutionary rates
    • Muse, S. V., and B. S. Weir. 1992. Testing for equality of evolutionary rates. Genetics 132:269-276.
    • (1992) Genetics , vol.132 , pp. 269-276
    • Muse, S.V.1    Weir, B.S.2
  • 46
    • 0026495826 scopus 로고
    • Progress with methods for constructing evolutionary trees
    • Penny, D., M. D. Hendy, and M. A. Steel. 1992. Progress with methods for constructing evolutionary trees. Trends Ecol. Evol. 7:73-79.
    • (1992) Trends Ecol. Evol. , vol.7 , pp. 73-79
    • Penny, D.1    Hendy, M.D.2    Steel, M.A.3
  • 47
    • 0034919016 scopus 로고    scopus 로고
    • Mitochondrial genomes of a bandicoot and a brushtail possum confirm the monophyly of australidelphian marsupials
    • Phillips, M. J., Y. H. Lin, G. L. Harrison, and D. Penny. 2001. Mitochondrial genomes of a bandicoot and a brushtail possum confirm the monophyly of australidelphian marsupials. Proc. R. Soc. Lond. B 268:1533-1538.
    • (2001) Proc. R. Soc. Lond. B , vol.268 , pp. 1533-1538
    • Phillips, M.J.1    Lin, Y.H.2    Harrison, G.L.3    Penny, D.4
  • 48
    • 0035722246 scopus 로고    scopus 로고
    • Biases in maximum likelihood and parsimony: A simulation approach to a 10-taxon case
    • Pol, D., and M. E. Siddall. 2001. Biases in maximum likelihood and parsimony: A simulation approach to a 10-taxon case. Cladistics 17:266-281.
    • (2001) Cladistics , vol.17 , pp. 266-281
    • Pol, D.1    Siddall, M.E.2
  • 49
    • 0037387372 scopus 로고    scopus 로고
    • Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference
    • Rosenberg, M. S., and S. Kumar. 2003. Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference. Mol. Biol. Evol. 20:610-621.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 610-621
    • Rosenberg, M.S.1    Kumar, S.2
  • 50
    • 0032860013 scopus 로고    scopus 로고
    • Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system
    • Saccone, C., C. D. Giorgi, C. Gissi, G. Pesole, and A. Reyes. 1999. Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system. Gene 238:195-209.
    • (1999) Gene , vol.238 , pp. 195-209
    • Saccone, C.1    Giorgi, C.D.2    Gissi, C.3    Pesole, G.4    Reyes, A.5
  • 51
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 53
    • 0000215283 scopus 로고    scopus 로고
    • Success of parsimony in the four-taxon case: Long-branch repulsion by likelihood in the Farris zone
    • Siddall, M. E. 1998. Success of parsimony in the four-taxon case: Long-branch repulsion by likelihood in the Farris zone. Cladistics 14:209-220.
    • (1998) Cladistics , vol.14 , pp. 209-220
    • Siddall, M.E.1
  • 55
    • 43949153645 scopus 로고
    • Recovering a tree from the leaf colourations it generates under a Markov model
    • Steel, M. A. 1994. Recovering a tree from the leaf colourations it generates under a Markov model. Appl. Math. Lett. 7:19-23.
    • (1994) Appl. Math. Lett. , vol.7 , pp. 19-23
    • Steel, M.A.1
  • 56
    • 0027180533 scopus 로고
    • Confidence in evolutionary trees from biological sequence data
    • Steel, M. A., P. J. Lockhart, and D. Penny. 1993. Confidence in evolutionary trees from biological sequence data. Nature 364:440-442.
    • (1993) Nature , vol.364 , pp. 440-442
    • Steel, M.A.1    Lockhart, P.J.2    Penny, D.3
  • 57
    • 4244163055 scopus 로고
    • Compositional variation and heterogeneity of nucleic acids and protein in bacteria
    • (I. C. Gunsalus and R. Y. Stanier, eds.). Academic Press, New York
    • Sueoka, N. 1964. Compositional variation and heterogeneity of nucleic acids and protein in bacteria. Pages 419-443 in The bacteria, volume V: Heredity (I. C. Gunsalus and R. Y. Stanier, eds.). Academic Press, New York.
    • (1964) The Bacteria, Volume V: Heredity , vol.5 , pp. 419-443
    • Sueoka, N.1
  • 58
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts
    • Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pages 407-514 in Molecular systematics (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 59
    • 0035527406 scopus 로고    scopus 로고
    • Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods
    • Swofford, D. L., P. J. Waddell, J. P. Huelsenbeck, P. G. Foster, P. O. Lewis, and J. S. Rogers. 2001. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst. Biol. 50:525-539.
    • (2001) Syst. Biol. , vol.50 , pp. 525-539
    • Swofford, D.L.1    Waddell, P.J.2    Huelsenbeck, J.P.3    Foster, P.G.4    Lewis, P.O.5    Rogers, J.S.6
  • 60
    • 0034907489 scopus 로고    scopus 로고
    • Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae
    • Tarrío, R., F. Rodríguez-Trelles, and F. J. Ayala. 2001. Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae. Mol. Biol. Evol. 18:1464-1473.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1464-1473
    • Tarrío, R.1    Rodríguez-Trelles, F.2    Ayala, F.J.3
  • 61
    • 0028205953 scopus 로고
    • Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site
    • Tateno, Y., N. Takezaki, and M. Nei. 1994. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site. Mol. Biol. Evol. 11:261-277.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 261-277
    • Tateno, Y.1    Takezaki, N.2    Nei, M.3
  • 62
    • 0000378875 scopus 로고
    • Evidence for higher rates of nucleotide substitution in rodents than in man
    • Wu, C.-I., and W.-H. Li. 1985. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl Acad. Sci. U.S.A. 82:1741-1745.
    • (1985) Proc. Natl Acad. Sci. U.S.A. , vol.82 , pp. 1741-1745
    • Wu, C.-I.1    Li, W.-H.2
  • 63
    • 0027132974 scopus 로고
    • Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang, Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 64
    • 0028961933 scopus 로고
    • On the use of nucleic acid sequences to infer early branches in the tree of life
    • Yang, Z., and D. Roberts. 1995. On the use of nucleic acid sequences to infer early branches in the tree of life. Mol. Biol. Evol. 12:451-458.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 451-458
    • Yang, Z.1    Roberts, D.2
  • 65
    • 12044256327 scopus 로고
    • Inconsistency of the maximum-parsimony method: The case of five taxa with a molecular clock
    • Zharkikh, A., and W.-H. Li. 1993. Inconsistency of the maximum-parsimony method: The case of five taxa with a molecular clock. Syst. Biol. 42:113-125.
    • (1993) Syst. Biol. , vol.42 , pp. 113-125
    • Zharkikh, A.1    Li, W.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.