-
1
-
-
33745032291
-
Water mediation in protein folding and molecular recognition
-
Levy Y, Onuchic JN (2006) Water mediation in protein folding and molecular recognition. Annu Rev Biophys Biomol Struct 35:389-415.
-
(2006)
Annu Rev Biophys Biomol Struct
, vol.35
, pp. 389-415
-
-
Levy, Y.1
Onuchic, J.N.2
-
2
-
-
2342527858
-
Dynamics of water in biological recognition
-
Pal SK, Zewail AH (2004) Dynamics of water in biological recognition. Chem Rev 104:2099-2123.
-
(2004)
Chem Rev
, vol.104
, pp. 2099-2123
-
-
Pal, S.K.1
Zewail, A.H.2
-
3
-
-
0036534542
-
Protein-water interactions in a dynamic world
-
Mattos C (2002) Protein-water interactions in a dynamic world. Trends Biochem Sci 27:203-208.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 203-208
-
-
Mattos, C.1
-
4
-
-
68049107111
-
Hydration dynamics and coupled water-protein fluctations probed by intrinsic tryptophan
-
Zhong D (2009) Hydration dynamics and coupled water-protein fluctations probed by intrinsic tryptophan. Adv Chem Phys 143:83-49.
-
(2009)
Adv Chem Phys
, vol.143
, pp. 83-49
-
-
Zhong, D.1
-
5
-
-
23044525643
-
Femtosecond studies of protein-DNA binding and dynamics: Histone I
-
Zhong D, Pal SK, Zewail AH (2001) Femtosecond studies of protein-DNA binding and dynamics: Histone I. ChemPhysChem 2:219-227.
-
(2001)
ChemPhysChem
, vol.2
, pp. 219-227
-
-
Zhong, D.1
Pal, S.K.2
Zewail, A.H.3
-
6
-
-
0034687737
-
Femtosecond studies of protein-ligand hydrophobic binding and dynamics: Human serum albumin
-
Zhong D, Douhal A, Zewail AH (2000) Femtosecond studies of protein-ligand hydrophobic binding and dynamics: Human serum albumin. Proc Natl Acad Sci USA 97:14056-14061.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14056-14061
-
-
Zhong, D.1
Douhal, A.2
Zewail, A.H.3
-
7
-
-
33745470061
-
Ultrafast solvation dynamics of human serum albumin: Correlations with conformational transitions and site-selected recognition
-
Qiu W, et al. (2006) Ultrafast solvation dynamics of human serum albumin: Correlations with conformational transitions and site-selected recognition. J Phys Chem B 110:10540-10549.
-
(2006)
J Phys Chem B
, vol.110
, pp. 10540-10549
-
-
Qiu, W.1
-
8
-
-
33846417622
-
Protein dynamics tightly connected to the dynamics of surrounding and internal water molecules
-
Helms V (2007) Protein dynamics tightly connected to the dynamics of surrounding and internal water molecules. ChemPhysChem 8:23-33.
-
(2007)
ChemPhysChem
, vol.8
, pp. 23-33
-
-
Helms, V.1
-
9
-
-
0033944466
-
Water in enzyme reactions: Biophysical aspects of hydrationdehydration processes
-
Pocker Y (2000) Water in enzyme reactions: Biophysical aspects of hydrationdehydration processes. Cell Mol Life Sci 57:1008-1017.
-
(2000)
Cell Mol Life Sci
, vol.57
, pp. 1008-1017
-
-
Pocker, Y.1
-
10
-
-
28044469667
-
Direct observation of thymine dimer repair in DNA by photolyase
-
Kao Y-T, Saxena C, Wang L, Sancar A, Zhong D (2005) Direct observation of thymine dimer repair in DNA by photolyase. Proc Natl Acad Sci USA 102:16128-16132.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 16128-16132
-
-
Kao, Y.-T.1
Saxena, C.2
Wang, L.3
Sancar, A.4
Zhong, D.5
-
11
-
-
34248330944
-
Dissection of complex protein dynamics in human thioredoxin
-
Qiu W, et al. (2007) Dissection of complex protein dynamics in human thioredoxin. Proc Natl Acad Sci USA 104:5366-5371.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5366-5371
-
-
Qiu, W.1
-
12
-
-
0000018654
-
Dielectric-relaxation in a protein matirx
-
Pierce DW, Boxer SG (1992) Dielectric-relaxation in a protein matirx. J Phys Chem 96:5560-5566.
-
(1992)
J Phys Chem
, vol.96
, pp. 5560-5566
-
-
Pierce, D.W.1
Boxer, S.G.2
-
13
-
-
0037204951
-
Probing protein electrostatics with a synthetic fluorescent amino acid
-
Cohen BE, et al. (2002) Probing protein electrostatics with a synthetic fluorescent amino acid. Science 296:1700-1703.
-
(2002)
Science
, vol.296
, pp. 1700-1703
-
-
Cohen, B.E.1
-
14
-
-
62849122006
-
Nanosecond time-dependent stokes shift at the tunnel mouth of haloalkane dehalogenases
-
Jesenská A, et al. (2009) Nanosecond time-dependent stokes shift at the tunnel mouth of haloalkane dehalogenases. J Am Chem Soc 131:494-501.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 494-501
-
-
Jesenská, A.1
-
15
-
-
0001632125
-
Stimulated photon-echo and transient-grating studies of protein-matrix solvation dynamics and interexciton-state radiationless decay in α phycocyanin and allophycocyanin
-
Homoelle BJ, Edington MD, Diffey WM, Beck WF (1998) Stimulated photon-echo and transient-grating studies of protein-matrix solvation dynamics and interexciton-state radiationless decay in α phycocyanin and allophycocyanin. J Phys Chem B 102:3044-3052.
-
(1998)
J Phys Chem B
, vol.102
, pp. 3044-3052
-
-
Homoelle, B.J.1
Edington, M.D.2
Diffey, W.M.3
Beck, W.F.4
-
16
-
-
0037133342
-
Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution
-
Pal SK, Peon J, Zewail AH (2002) Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution. Proc Natl Acad Sci USA 99:1763-1768.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 1763-1768
-
-
Pal, S.K.1
Peon, J.2
Zewail, A.H.3
-
17
-
-
25444458922
-
Ultrafast hydration dynamics in melittin folding and aggregation: Helix formation and tetramer self-assembly
-
Qiu W, et al. (2005) Ultrafast hydration dynamics in melittin folding and aggregation: Helix formation and tetramer self-assembly. J Phys Chem B 109:16901-16910.
-
(2005)
J Phys Chem B
, vol.109
, pp. 16901-16910
-
-
Qiu, W.1
-
18
-
-
33748991142
-
Protein surface hydration mapped by site-specific mutations
-
Qiu W, et al. (2006) Protein surface hydration mapped by site-specific mutations. Proc Natl Acad Sci USA 103:13979-13984.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13979-13984
-
-
Qiu, W.1
-
19
-
-
36749028305
-
Mapping hydration dynamics around a protein surface
-
Zhang L, et al. (2007) Mapping hydration dynamics around a protein surface. Proc Natl Acad Sci USA 104:18461-18466.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 18461-18466
-
-
Zhang, L.1
-
20
-
-
68049087927
-
Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations
-
Zhang L, Yang Y, Kao Y-T, Wang L, Zhong D (2009) Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations. J Am Chem Soc 131:10677-10691.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 10677-10691
-
-
Zhang, L.1
Yang, Y.2
Kao, Y.-T.3
Wang, L.4
Zhong, D.5
-
22
-
-
45249083827
-
Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase
-
Kao Y-T, et al. (2008) Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase. J Am Chem Soc 130:7695-7701.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 7695-7701
-
-
Kao, Y.-T.1
-
23
-
-
58149159934
-
Ultrafast dynamics of flavins in five redox states
-
Kao Y-T, et al. (2008) Ultrafast dynamics of flavins in five redox states. J Am Chem Soc 130:13132-13139.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 13132-13139
-
-
Kao, Y.-T.1
-
24
-
-
0038305458
-
Structure and function of DNA photolyase and cryptochrome bluelight photoreceptors
-
Sancar A (2003) Structure and function of DNA photolyase and cryptochrome bluelight photoreceptors. Chem Rev 103:2203-2237.
-
(2003)
Chem Rev
, vol.103
, pp. 2203-2237
-
-
Sancar, A.1
-
25
-
-
0028812143
-
Crystal structure of DNA photolyase from Escherichia coli
-
Park HW, Kim ST, Sancar A, Deisenhofer J (1995) Crystal structure of DNA photolyase from Escherichia coli. Science 268:1866-1872.
-
(1995)
Science
, vol.268
, pp. 1866-1872
-
-
Park, H.W.1
Kim, S.T.2
Sancar, A.3
Deisenhofer, J.4
-
26
-
-
57749084494
-
Crystal structure and mechanism of a DNA (6-4) photolyase
-
Maul MJ, et al. (2008) Crystal structure and mechanism of a DNA (6-4) photolyase. Angew Chem Int Ed 47:10076-10080.
-
(2008)
Angew Chem Int Ed
, vol.47
, pp. 10076-10080
-
-
Maul, M.J.1
-
27
-
-
34047267978
-
Ultrafast catalytic processes in enzymes
-
Zhong D (2007) Ultrafast catalytic processes in enzymes. Curr Opin Chem Biol 11:174-181.
-
(2007)
Curr Opin Chem Biol
, vol.11
, pp. 174-181
-
-
Zhong, D.1
-
28
-
-
34548331981
-
Femtochemistry in enzyme catalysis: DNA photolyase
-
Kao Y-T, Saxena C, Wang L, Sancar A, Zhong D (2007) Femtochemistry in enzyme catalysis: DNA photolyase. Cell Biochem Biophys 48:32-44.
-
(2007)
Cell Biochem Biophys
, vol.48
, pp. 32-44
-
-
Kao, Y.-T.1
Saxena, C.2
Wang, L.3
Sancar, A.4
Zhong, D.5
-
29
-
-
13444256135
-
Femtosecond dynamics of flavin cofactor in DNA photolyase: Radical reduction, local solvation, and charge recombination
-
Wang H, Saxena C, Quan D, Sancar A, Zhong D (2005) Femtosecond dynamics of flavin cofactor in DNA photolyase: Radical reduction, local solvation, and charge recombination. J Phys Chem B 109:1329-1333.
-
(2005)
J Phys Chem B
, vol.109
, pp. 1329-1333
-
-
Wang, H.1
Saxena, C.2
Quan, D.3
Sancar, A.4
Zhong, D.5
-
30
-
-
9944229136
-
Femtosecond dynamics of DNA photolyase: Energy transfer of antenna initiation and electron transfer of cofactor reduction
-
Saxena C, Sancar A, Zhong D (2004) Femtosecond dynamics of DNA photolyase: Energy transfer of antenna initiation and electron transfer of cofactor reduction. J Phys Chem B 108:18026-18033.
-
(2004)
J Phys Chem B
, vol.108
, pp. 18026-18033
-
-
Saxena, C.1
Sancar, A.2
Zhong, D.3
-
31
-
-
49149103923
-
Theoretical study of excitation energy transfer in DNA photolyase
-
Zheng X, Garcia J, Stuchebrukhov AA (2008) Theoretical study of excitation energy transfer in DNA photolyase. J Phys Chem B 112:8724-8729.
-
(2008)
J Phys Chem B
, vol.112
, pp. 8724-8729
-
-
Zheng, X.1
Garcia, J.2
Stuchebrukhov, A.A.3
-
32
-
-
0023666973
-
Photochemical properties of Escherichia coli DNA photolyase: Selective photodecomposition of the second chromophore
-
Heelis PF, Payne G, Sancar A (1987) Photochemical properties of Escherichia coli DNA photolyase: Selective photodecomposition of the second chromophore. Biochemistry 26:4634-4640.
-
(1987)
Biochemistry
, vol.26
, pp. 4634-4640
-
-
Heelis, P.F.1
Payne, G.2
Sancar, A.3
-
33
-
-
52949092784
-
Purification and characterization of a type III photolyase from Caulobacter crescentus
-
Öztürk N, et al. (2008) Purification and characterization of a type III photolyase from Caulobacter crescentus. Biochemistry 47:10255-10261.
-
(2008)
Biochemistry
, vol.47
, pp. 10255-10261
-
-
Öztürk, N.1
-
34
-
-
1842525751
-
Femtosecond studies of tryptophan solvation: Correlation function and water dynamics at lipid surfaces
-
Lu W, Kim J, Qiu W, Zhong D (2004) Femtosecond studies of tryptophan solvation: Correlation function and water dynamics at lipid surfaces. Chem Phys Lett 388:120-126.
-
(2004)
Chem Phys Lett
, vol.388
, pp. 120-126
-
-
Lu, W.1
Kim, J.2
Qiu, W.3
Zhong, D.4
-
35
-
-
44749085665
-
Ultrafast UV photon echo peak shift and fluorescence up conversion studies of non-polar solvation dynamics
-
Oskouei AA, et al. (2008) Ultrafast UV photon echo peak shift and fluorescence up conversion studies of non-polar solvation dynamics. Chem Phys 350:104-110.
-
(2008)
Chem Phys
, vol.350
, pp. 104-110
-
-
Oskouei, A.A.1
-
36
-
-
0033262619
-
Theoretical study on the lowest-frequency mode of the flavin ring
-
Nakai S, Yoneda F, Yamabe T (1999) Theoretical study on the lowest-frequency mode of the flavin ring. Theor Chem Acc 103:109-116.
-
(1999)
Theor Chem Acc
, vol.103
, pp. 109-116
-
-
Nakai, S.1
Yoneda, F.2
Yamabe, T.3
-
37
-
-
35148825159
-
Theoretical study on the singlet excited state of pterin and its deactivation pathway
-
Chen X, Xu X, Cao Z (2007) Theoretical study on the singlet excited state of pterin and its deactivation pathway. J Phys Chem A 111:9255-9262.
-
(2007)
J Phys Chem A
, vol.111
, pp. 9255-9262
-
-
Chen, X.1
Xu, X.2
Cao, Z.3
-
39
-
-
33947425139
-
Hydration dynamics and time scales of coupled water-protein fluctuations
-
Li T, Hassanali AA, Kao Y-T, Zhong D, Singer SJ (2007) Hydration dynamics and time scales of coupled water-protein fluctuations. J Am Chem Soc 129:3376-3382.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 3376-3382
-
-
Li, T.1
Hassanali, A.A.2
Kao, Y.-T.3
Zhong, D.4
Singer, S.J.5
-
40
-
-
0034673272
-
Theoretical study of electron transfer between the photolyase catalytic cofactor FADH- and DNA thymine dimer
-
Antony J, Medvedev DM, Stuchebrukhov AA (2000) Theoretical study of electron transfer between the photolyase catalytic cofactor FADH- and DNA thymine dimer. J Am Chem Soc 122:1057-1065.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 1057-1065
-
-
Antony, J.1
Medvedev, D.M.2
Stuchebrukhov, A.A.3
-
41
-
-
0035971105
-
Role of two histidines in the (6-4) photolyase reaction
-
Hitomi K, et al. (2001) Role of two histidines in the (6-4) photolyase reaction. J Biol Chem 276:10103-10109.
-
(2001)
J Biol Chem
, vol.276
, pp. 10103-10109
-
-
Hitomi, K.1
-
42
-
-
33749599714
-
Femtosecond studies of tryptophan fluorescence dynamics in proteins: Local solvation and electronic quenching
-
Zhang L, Kao Y-T, Qiu W, Wang L, Zhong D (2006) Femtosecond studies of tryptophan fluorescence dynamics in proteins: Local solvation and electronic quenching. J Phys Chem B 110:18097-18103.
-
(2006)
J Phys Chem B
, vol.110
, pp. 18097-18103
-
-
Zhang, L.1
Kao, Y.-T.2
Qiu, W.3
Wang, L.4
Zhong, D.5
-
43
-
-
35648943635
-
Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 2. Unusual photophysical properties
-
Shi X, et al. (2007) Ultrafast excited-state dynamics in the green fluorescent protein variant S65T/H148D. 2. Unusual photophysical properties. Biochemistry 46:12014-12025.
-
(2007)
Biochemistry
, vol.46
, pp. 12014-12025
-
-
Shi, X.1
-
44
-
-
0021320970
-
Purification of Escherichia coli DNA photolyase
-
Sancar A, Smith FW, Sancar GB (1984) Purification of Escherichia coli DNA photolyase. J Biol Chem 259:6028-6032.
-
(1984)
J Biol Chem
, vol.259
, pp. 6028-6032
-
-
Sancar, A.1
Smith, F.W.2
Sancar, G.B.3
-
45
-
-
33748756801
-
Similarities and differences between cyclobutane pyrimidine dimer photolyase and (6-4) photolyase as revealed by resonance Raman spectroscopy: Electron transfer from the FAD cofactor to ultraviolet-damaged DNA
-
Li J, Uchida T, Todo T, Kitagawa T (2006) Similarities and differences between cyclobutane pyrimidine dimer photolyase and (6-4) photolyase as revealed by resonance Raman spectroscopy: Electron transfer from the FAD cofactor to ultraviolet-damaged DNA. J Biol Chem 281:25551-25559.
-
(2006)
J Biol Chem
, vol.281
, pp. 25551-25559
-
-
Li, J.1
Uchida, T.2
Todo, T.3
Kitagawa, T.4
-
46
-
-
0042956534
-
Picosecond solvation dynamics of coumarin 153: The importance of molecular aspect of solvation
-
Maroncelli M, Fleming GR (1987) Picosecond solvation dynamics of coumarin 153: The importance of molecular aspect of solvation. J Chem Phys 86:6221-6239.
-
(1987)
J Chem Phys
, vol.86
, pp. 6221-6239
-
-
Maroncelli, M.1
Fleming, G.R.2
|