Femtosecond studies of tryptophan fluorescence dynamics in proteins: Local solvation and electronic quenching

Journal of Physical Chemistry B

Volumn 110, Issue 37, 2006, Pages 18097-18103

  Zhang, Luyuan ^a   Kao, Ya Ting ^a   Qiu, Weihong ^a   Wang, Lijuan ^a   Zhong, Dongping ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRONIC PROPERTIES; FLUORESCENCE; HYDRATION; LIGHT EMISSION; MOLECULAR DYNAMICS; QUENCHING;

BIOLOGICAL SYSTEMS; ELECTRONIC QUENCHING; PROTEIN-WATER INTERACTIONS; TRYPTOPHAN FLUORESCENCE DYNAMICS;

PROTEINS;

EID: 33749599714     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp063025e     Document Type: Article

References (54)

1. Beechem, J. M.; Brand, L. Annu. Rev. Biochem. 1985, 54, 43.
2. Eftink, M. R. In Methods of Biochemical Analysis; Suelter, C. H., Ed.; John Wiley & Sons: New York, 1991; Vol. 35.
3. Lakowicz, J. R. Principles of Fluorescence Spectroscopy; Springer: New York, 1999.
4. Topics in Fluorescence Spectroscopy, Vol. 6: Protein Fluorescence; Lakowicz, J. R., Ed.; Kluwer Academic: New York, 2000.
5. Callis, P. R. Methods Enzymol. 1997, 278, 113.
6. Lakowicz, J. R. Photochem. Photobiol. 2000, 72, 421.
7. Stubbe, J.; van der Donk, W. A. Chem. Rev. 1998, 98, 705.
8. Stubbe, J.; Nocera, D. G.; Yee, C. S.; Chang, M. C. Y. Chem. Rev. 2003, 103, 2167.
9. Zhong, D.; Zewail, A. H. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 11867.
10. Mataga, N.; Chosrowjan, H.; Shibata, Y.; Tanaka, F.; Nishina, Y.; Shiga, K. J. Phys. Chem. B 2000, 104, 10667.
11. Mataga, N.; Chosrowjan, H.; Taniguchi, S.; Tanaka, F.; Kido, N.; Kitamura, M. J. Phys. Chem. B 2002, 106, 8917.
12. Saxena, C.; Sancar, A.; Zhong, D. J. Phys. Chem. B 2004, 108, 18026.
13. Aubert, C.; Vos, M. H.; Mathis, P.; Eker, A. P. M.; Brettel, K. Nature (London) 2000, 405, 586.
14. Byrdin, M.; Eker, A. P. M.; Vos, M. H.; Brettel, K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 8676.
15. Hochstrasser, R. M.; Negus, D. K. Proc. Natl. Acad. Sci. U.S.A. 1984, 81, 4399.
16. Janes, S. M.; Holtom, G.; Ascenzi, P.; Brunori, M.; Hochstrasser, R. M. Biophys. J. 1987, 51, 653.
17. Gryczynski, Z.; Tenenholz, T.; Bucci, E. Biophys. J. 1992, 63, 648.
18. Zhong, D.; Pal, S. K.; Zhang, D.; Chan, S. I.; Zewail, A. H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 13.
19. Shen, X.; Knutson, J. R. J. Phys. Chem. B 2001, 105, 6260.
20. Szabo, A. G.; Rayner, D. M. J. Am. Chem. Soc. 1980, 102, 554.
21. Pal, S. K.; Peon, J.; Bagchi, B.; Zewail, A. H. J. Phys. Chem. B 2002, 106, 12376.
22. Pal, S. K.; Zewail, A. H. Chem. Rev. 2004, 104, 2099.
23. Peon, J.; Pal, S. K.; Zewail, A. H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 10964.
24. Pal, S. K.; Peon, J.; Zewail, A. H. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 1763.
25. Lu, W.; Kim, J.; Qiu, W.; Zhong, D. Chem. Phys. Lett. 2004, 388, 120.
26. Lu, W.; Qiu, W.; Kim, J.; Okobiah, O.; Hu, J.; Gokel, G. W.; Zhong, D. Chem. Phys. Lett. 2004, 394, 415.
27. Qiu, W.; Zhang, L.; Kao, Y.-T.; Lu, W.; Li, T.; Kim, J.; Sollenberger, G. M.; Wang, L.; Zhong, D. J. Phys. Chem. B 2005, 109, 16901.
28. Qiu, W.; Zhang, L.; Okobiah, O.; Yang, Y.; Wang, L.; Zhong, D.; Zewail, A. H. J. Phys. Chem. B 2006, 110, 10540.
29. Wüthrich, K. Angew. Chem., Int. Ed. 2003, 42, 3340.
30. Mattos, C. Trends Biochem. Sci. 2002, 27, 203.
31. Bizzarri, A. R.; Cannistraro, S. J. Phys. Chem. B 2002, 106, 6617.
32. Finney, J. L. Faraday Discuss. 1996, 103, 1. See references therein.
33. Bryant, R. G. Annu. Rev. Biophys. Biomol. Struct. 1996, 25, 29.
34. Protein-Solvent Interaction; Gregory, R. B., Ed.; Marcel Dekker: New York, 1995.
35. Timasheff, S. N. Annu. Rev. Biophys. Biomol. Struct. 1993, 22, 67.
36. Teeter, M. M. Annu. Rev. Biophys. Biophys. Chem. 1991, 20, 577.
37. Otting, G.; Liepinsh, E.; Wüthrich, K. Science 1991, 254, 974.
38. Kao, Y.-T.; Zhong, D. In preparation.
39. Xu, J.; Toptygin, D.; Graver, K. J.; Albertini, R. A.; Savtchenko, R. S.; Meadow, N. D.; Roseman, S.; Callis, P. R.; Brand, L; Knutson, J. R. J. Am. Chem. Soc. 2006, 128, 1214.
40. Qiu, W.; Zhong, D. In preparation.
41. Kim, J.; Lu, W.; Qiu, W.; Wang, L.; Caffrey, M.; Zhong, D. J. Phys. Chem. B, submitted for publication.
42. Pan, C.-P.; Callis, P. R.; Barkley, M. D. J. Phys. Chem. B 2006, 110, 7009.
43. Terwilliger, T. C.; Eisenberg, D. J. Biol. Chem. 1982, 257, 6010.
44. Terwilliger, T. C.; Eisenberg, D. J. Biol. Chem. 1982, 257, 6016.
45. Chen, Y.; Liu, B.; Yu, H.-T.; Barkley, M. D. J. Am. Chem. Soc. 1996, 118, 9271.
46. Chen, Y.; Barkley, M. D. Biochemistry 1998, 37, 9976.
47. Callis, P. R.; Liu, T. J. Phys. Chem. B 2004, 108, 4248.
48. Callis, P. R.; Vivian, J. T. Chem. Phys. Lett. 2003, 369, 409.
49. (a) Siemiarczuk, A.; Petersen, C. E.; Ha, C.-E.; Yang, J.; Bhagavan, N. V. Cell Biochem. Biophys. 2004, 40, 115.
50. (b) Wardell, M.; Wang, Z.; Ho, J. X.; Robert, J.; Ruker, F.; Ruble, J.; Carter, D. C. Biochem. Biophys. Res. Commun. 2002, 291, 813.
51. Carter, D. C.; Ho, J. X. Adv. Protein Chem. 1994, 45, 153.
52. He, X. M.; Carter, D. C. Nature (London) 1992, 358, 209.
53. Weichsel, A.; Gasdaska, J. R.; Powis, G.; Montfort, W. R. Structure 1996, 4, 735.
54. Peon, J.; Hess, G. C.; Pecourt, J.-M. L.; Yuzawa, T.; Kohler, B. J. Phys. Chem. A 1999, 103, 2460.