Femtosecond dynamics of flavin cofactor in DNA photolyase: Radical reduction, local Solvation, and charge recombination

Journal of Physical Chemistry B

Volumn 109, Issue 4, 2005, Pages 1329-1333

  Wang, Haiyu ^a   Saxena, Chaitanya ^a   Quan, Donghui ^a   Sancar, Aziz ^b   Zhong, Dongping ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FEMTOSECOND DYNAMICS; FLAVIN COFACTOR; PHOTOLYASE; SOLVATION DYNAMICS;

ABSORPTION; CATALYSIS; DNA; ESCHERICHIA COLI; OXIDATION; PHOTOCHEMICAL REACTIONS; REDUCTION;

ENZYMES;

DEOXYRIBODIPYRIMIDINE PHOTOLYASE; RIBOFLAVIN DERIVATIVE; WATER;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; ESCHERICHIA COLI; KINETICS; OXIDATION REDUCTION REACTION; PHOTOCHEMISTRY; SOLUBILITY; TIME; X RAY CRYSTALLOGRAPHY;

BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; ESCHERICHIA COLI; FLAVINS; KINETICS; MODELS, MOLECULAR; OXIDATION-REDUCTION; PHOTOCHEMISTRY; SOLUBILITY; TIME FACTORS; WATER;

EID: 13444256135     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp044652b     Document Type: Article

References (39)

1. Sancar, A. Chem. Rev. 2003, 705, 2203.
2. Sancar, A. Annu. Rev. Biochem. 2000, 69, 31.
3. Kim, S. T.; Sancar, A.; Essenmacher, C.; Babcock, G. T. Proc. Natl. Acad. Sci. U.S.A 1993, 90, 8023.
4. Park, H.; Kim, S.; Sancar, A.; Deisenhofer, J. Science 1995, 268, 1866.
5. Li, Y. F.; Heelis, P. F.; Sancar, A. Biochemistry 1991, 30, 6322.
6. Aubert, C.; Vos, N. H.; Mathis, P.; Eker, A. P. M.; Brettel, K. Nature 2000, 405, 586.
7. Byrdin, M.; Eker, A. P. M.; Vos, M. H.; Brettel, K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 8676.
8. Saxena, C.; Sancar, A.; Zhong, D. J. Phys. Chem. B 2004, 108, 18026.
9. Pan, J.; Byrdin, M.; Aubert, C.; Eker, A. P. M.; Brettel, K.; Vos, M. H. J. Phys. Chem. B 2004, 108, 10160.
10. Sanders, D. B.; Wiest, O. J. Am. Chem. Soc. 1999, 121, 5157.
11. Heelis, P. F.; Payne, G. P.; Sancar, A. Biochemistry 1987, 26, 4634.
12. Sancar, A.; Smith, F. W.; Sancar, G. B. J. Biol. Chem. 1984, 259, 6028.
13. Jorns, M. S.; Wang, B.; Jordan, S. P.; Chanderkar, L. P. Biochemistry 1990, 29, 552.
14. DeFelippis, M. R.; Murthy, C. P.: Broitman, F.; Weinraub, D.; Faraggi, M.; Klapper, M. H. J. Phys. Chem. 1991, 95, 3416. Harriman, A. J. Phys. Chem. 1987, 91, 6102.
15. DeFelippis, M. R.; Murthy, C. P.: Broitman, F.; Weinraub, D.; Faraggi, M.; Klapper, M. H. J. Phys. Chem. 1991, 95, 3416. Harriman, A. J. Phys. Chem. 1987, 91, 6102.
16. Heelis, P. F.; Deeble, D. J.; Kim, S. T.; Sancar, A. Int. J. Radiat. Biol. 1992, 62, 137.
17. 17 we estimated an oxidation potential of phenylalanine (F366) to be less than +2.0 V vs NHE within a highly polar environment in E. coli photolyase.
18. 17 we estimated an oxidation potential of phenylalanine (F366) to be less than +2.0 V vs NHE within a highly polar environment in E. coli photolyase.
19. Malaga, N.; Chosrowjan, H.; Taniguchi, S. J. Phys. Chem. B 2002, 106, 8917.
20. Mulliken, R. S. J. Am. Chem. Soc. 1950, 72, 610; J. Am. Chem. Soc. 1952, 74, 811.
21. Mulliken, R. S. J. Am. Chem. Soc. 1950, 72, 610; J. Am. Chem. Soc. 1952, 74, 811.
22. Cheng, P. Y.; Zhong, D.; Zewail, A. H. J. Chem. Phys. 1996, 105, 6216, Zhong, D.; Bernhardt, T. M.; Zewail, A. H. J. Phys. Chem. A 1999, 103, 10095.
23. Cheng, P. Y.; Zhong, D.; Zewail, A. H. J. Chem. Phys. 1996, 105, 6216, Zhong, D.; Bernhardt, T. M.; Zewail, A. H. J. Phys. Chem. A 1999, 103, 10095.
24. Cheung, M. S.; Daizadeh, I.; Stuchebrukhov, A. A.; Heelis, P. F. Biophys. J. 1999, 76, 1241.
25. Shida, T. Electronic absorption spectra of radical ions; Elsevier: Amsterdam, 1988. Shida, T.; Hamill, W. J. Chem. Phys. 1966, 44, 2375.
26. Shida, T. Electronic absorption spectra of radical ions; Elsevier: Amsterdam, 1988. Shida, T.; Hamill, W. J. Chem. Phys. 1966, 44, 2375.
27. Byrdin, M.; Sartor, V.; Eker, A. P. M.; Vos, M. H.; Aubert, C.; Brettle, K.; Mathis, P. Biochim. Biophys. Acta 2004, 1655, 64.
28. Zhong, D.; Zewail, A. H. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 11867.
29. Malaga, N.; Chosrowjan, H.; Shibata, Y.; Tanaka, F.; Nishina, Y.; Shiga, K. J. Phys. Chem. B 2000, 104, 10667.
30. Zhong, D.; Pal, S. K.; Zhang, D.; Chan, S. I.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 13.
31. Pal, S.; Peon, J.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 1763. Peon, J.; Pal, S.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 10964. Pal, S. K.; Peon, J.; Bagchi, B.; Zewail, A. H. J. Phys. Chem. B 2002, 106, 12376.
32. Pal, S.; Peon, J.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 1763. Peon, J.; Pal, S.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 10964. Pal, S. K.; Peon, J.; Bagchi, B.; Zewail, A. H. J. Phys. Chem. B 2002, 106, 12376.
33. Pal, S.; Peon, J.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 1763. Peon, J.; Pal, S.; Zewail, A. H. Proc. Natl. Acad. Sci. U.SA. 2002, 99, 10964. Pal, S. K.; Peon, J.; Bagchi, B.; Zewail, A. H. J. Phys. Chem. B 2002, 106, 12376.
34. Pal, S. K.; Zewail, A. H. Chem. Rev. 2004, 104, 2099.
35. Lu, W.; Kim, J.; Qiu, W.; Zhong, D. Chem. Phys. Lett. 2004, 388, 120, Lu, W.; Qiu, W.; Kim, J.; Okobiah, O.; Hu, J.; Gokel, G. W.; Zhong, D. Chem. Phys. Lett. 2004, 394, 415.
36. Lu, W.; Kim, J.; Qiu, W.; Zhong, D. Chem. Phys. Lett. 2004, 388, 120, Lu, W.; Qiu, W.; Kim, J.; Okobiah, O.; Hu, J.; Gokel, G. W.; Zhong, D. Chem. Phys. Lett. 2004, 394, 415.
37. Qiu, W.; Zhong, D. Manuscript in preparation. Kao, Y.; Zhong, D. To be submitted.
38. Qiu, W.; Zhong, D. Manuscript in preparation. Kao, Y.; Zhong, D. To be submitted.
39. Mattos, C. Trends Biochem. Sci. 2002, 27, 203.