Comparison of simulations of lipid membranes with membranes of block copolymers

Advances in Polymer Science

Volumn 224, Issue 1, 2010, Pages 197-233

  Daoulas, Kostas Ch ^a   Müller, Marcus ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Block copolymers; Coarse grained models; Collective phenomena; Computer simulation; Fusion; Lipid membranes; Monte Carlo techniques; Polymersome; Pore formation; Self consistent field theory; Self assembly; Vesicle

Indexed keywords

EID: 77649197736     PISSN: 00653195     EISSN: None     Source Type: Book Series    
DOI: 10.1007/12-2009-7     Document Type: Article

References (146)

1. Israelachvili J (1991) Intermolecular and surface forces. Academic, New York
2. Singer SJ, Nicolson GL (1972) Science 175:720
3. Engelman DM (2005) Nature 438:578
4. Sackmann E (1995) Biological membranes architecture and function. In: Handbook of biological physics, vol.1. Elsevier, Amsterdam
5. Venturoli M, Sperotto MM, Kranenburg M, Smit B (2006) Phys Rep 437:1
6. Takamori S, Holt M, Stenius K, Lemke EA, Gronborg M, Riedel D, Urlaub H, Schenck S, Brügger B, Ringler P, Müller SA, Rammner B, Gräter F, Hub JS, De Groot BL, Mieskes G, Moriyama Y, Klingauf J, Grubmüller H, Heuser J, Wieland F, Jahn R (2006) Cell 127:831
7. Kusumi A, Nakada C, Ritchie K, Murase K, Suzuki K, Murakoshi H, Kasai RS, Kondo J, Fujiwara T (2005) Annu Rev Biophys Biomol Struct 34:351
8. Murtola T, Rog T, Falck E, Karttunen M, Vattulainen I (2006) Phys Rev Lett 97:238102
9. Torchilin VP (2005) Nat Rev Drug Disc 4:145
10. Allen TM, Cullis PR (2004) Science 303:1818
11. Allen TM, Moase EH (1996) Adv Drug Deliv Rev 21:117
12. Malmsten M (2006) Soft Matter 2:760
13. Mori A, Klibanov AL, Torchilin VP, Huang L (1991) FEBS Lett 284:263
14. Semple SC, Chonn A, Cullis PR (1998) Adv Drug Deliv Rev 32:3
15. Allen TM (2002) Nat Rev Cancer 2:750
16. Kaneda Y (2000) Adv Drug Deliv Rev 43:197
17. Straubinger RM, Duzgunes N, Papahadjopoulos D (1985) FEBS Lett 179:148
18. Simoes S, Moreira JN, Fonseca C, Duzgunes N, de Lima MC (2004) Adv Drug Deliv Rev 56:947
19. Lim-Soo P, Eisenberg A (2004) J Polym Sci B Polym Phys 42:923
20. Luo L, Eisenberg A (2001) Langmuir 17:6804
21. Bermudez H, Brannan AK, Hammer DA, Bates FS, Discher DE (2002) Macromolecules 35:8203
22. Discher BM,Won Y, Ege DS, Lee JC-M, Bates FS, Discher DE, Hammer DA (1999) Science 284:1143
23. Discher DE, Eisenberg A (2002) Science 297:967
24. Hamley IW (2005) Soft Matter 1:36
25. Mecke A, Dittrich, Meier W (2006) Soft Matter 2:751
26. Discher D, Ahmed F (2006) Annu Rev Biomed Eng 8:323
27. Graff A, Sauer M, Gelder PV, Meier W (2002) PNAS 99:5064
28. Ding J, Liu G (1998) J Phys Chem B. 102:6107
29. Nardin C, Hirt T, Leukel J, Meier W (2000) Langmuir 16:1035
30. Maskos M, Harris JR (2001) Macromol Rapid Commun 22:271
31. Photos PJ, Bacakova L, Discher B, Bates FS, Discher DE (2003) J Control Release 90:323
32. Taubert A, Napoli A, Meier W (2004) Curr Opin Chem Biol 8:598
33. Ahmed F, Discher DE (2004) J Control Release 96:37
34. Nardin C, Bolikal D, Kohn J (2004) Langmuir 20:11721
35. Seul M, Andelman D (1995) Science 267:476
36. Ohta T, Kawasaki K (1986) Macromolecules 19:2621
37. Glotzer SC, Solomon MJ (2006) Nat Mater 6:557
38. Müller M, Katsov K, Schick M (2002) J Chem Phys 116:2342
39. Müller M, Katsov K, Schick M (2003) J Polym Sci B Polym Phys B41:1441
40. Müller M, Katsov K, Schick M (2006) Phys Rep 434:113
41. Müller M (2006) Comparison of self-consistent field theory and Monte Carlo simulations. In: Gompper G, Schick M (eds) Soft matter, vol.1. Wiley, Weinheim
42. Kremer K, Müller-Plathe F (2002) Mol Sim 28:729
43. Müller-Plathe F (2002) ChemPhysChem 3:754
44. Helfrich W (1973) Z Naturforsch 28:693
45. Zhong-can O, Helfrich W (1987) Phys Rev Lett 59:2486
46. Milner ST, Safran SA (1987) Phys Rev A 36:4371
47. Morse DC, Milner ST (1995) Phys Rev E. 52:5918
48. Seifert U (1997) Adv Phys 46:13
49. Safran SA, Gov N, Nicolas A, Schwarz US, Tlusty T (2005) Physica A 352:171
50. Döbereiner HG, Evans E, Kraus M, Seifert U, Wortis M (1997) Phys Rev E. 55:4456
51. Döbereiner HG, Gompper G, Haluska CK, Kroll DM, Petrov PG, Riske KA (2003) Phys Rev Lett 91:048301
52. Lebedev VV, Turitsyn KS, Vergeles SS (2007) Phys Rev Lett 99:218101
53. Atilgan E, Sun SX (2007) J Chem Phys 126:095102
54. Weiner SJ, Kollman PA, Case DA, Singh UC, Ghio C, Alagona G, Profeta S,Weiner P (1984) J Am Chem Soc 106:765
55. Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M (1983) J Comp Chem 4:187
56. van Gunsteren WF, Berendsen HJC (1987) Groningen molecular simulation (GROMOS) library manual. Biomos, Groningen
57. Jorgensen WL, Maxwell SD, Tirado-Rives J (1996) J Am Chem Soc 118:11225
58. Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL (2001) J Phys Chem B. 105:6474
59. Levitt M (1990) Energy calculations and dynamics program. Molecular Applications Group, Standford and Yeda, Behovot, Israel
60. de Vries AH, Mark AE, Marrink JS (2004) JACS 126:4488
61. Anezo C, de Vries AH, Höltje HD, Tieleman DP,Marrink SJ (2003) J Phys Chem B. 107:9424
62. Berger O, Edholm O, Jähnig (1997) Biophys J 72:2002
63. Marrink SJ, Mark AE (2003) J Am Chem Soc 125:15233
64. Marrink SJ, Mark AE (2003) J Am Chem Soc 125:11144
65. Smit B, Hilbers PAJ, Esselink K, Rupert LAM, Van Os NM, Schlijper AG (1991) J Phys Chem 95:6361
66. Götz R, Gompper G, Lipowsky R (1999) Phys Rev Lett 82:221
67. Shelley JC, Shelley M, Reeder R, Bandyopadhyay S, Klein ML (2001) J Phys Chem B. 105:4464
68. Sevink GJA, Zvelindovsky AV (2005) Macromolecules 38:7502
69. Bernardes AT (1996) Langmuir 12:5763
70. Noguchi H, Takasu MP (2001) Phys Rev E. 64:041913
71. Yamamoto S, Maruyama A, Hyodo S (2002) J Chem Phys 116:5842
72. Xe X, Schmid F (2006) Macromolecules 39:2654
73. Chernomordik L, Kozlov MM, Zimmerberg J (1995) J Membr Biol 146:1
74. Mayer A (2002) Ann Rev Cell Dev Biol 18:289
75. Tamm LK, Crane J, Kiessling V (2003) Curr Opin Struct Biol 13:453
76. Blumenthal R, Clague MJ, Durell SR, Epand RM (2003) Chem Rev 103:53
77. Zimmerberg J, Chernomordik L (1999) Adv Drug Deliv Rev 38:197
78. Lee J, Lentz BR (1997) Biochemistry 36:6251
79. Lentz BR, Malinin V, Haque MdE, Evans K (2000) Struct Biol 10:607
80. Kozlov MM, Markin VS (1983) Biofizika 28:255
81. Chernomordik LV, Melikyan GB, Chizmadzhev YA (1987) Biochim Biophys Acta 906:309
82. Müller M, Katsov K, Schick M (2003) Biophys J 85:1611
83. Knecht V, Marrink SJ (2007) Biophys J 92:4254
84. Smeijers AF, Markvoort AJ, Pieterse K, Hilbers PAJ (2006) J Phys Chem B. 110:13212
85. Srinivas G, Discher DE, Klein ML (2004) Nat Mater 3:638
86. Ortiz V, Nielsen SO, Discher DE, Klein ML, Lipowsky R, Shillcock J (2005) J Phys Chem B. 109:17708
87. Srinivas G, Shelley JC, Nielsen SO, Discher DE, Klein ML (2004) J Phys Chem B. 108:8153
88. Scott LH (2002) Curr Opin Struct Biol 12:495
89. Zhang Y, Feller SE, Brooks BR, Pastor RW (1995) J Chem Phys 103:10252
90. Feller SE, Zhang Y, Pastor RW (1995) J Chem Phys 103:10267
91. Feller SE, Pastor RW (1996) Biophys J 71:1996
92. Marrink SJ, Mark AE (2001) J Phys Chem B. 105:6122
93. Pugnaloni LA, Ettelaie R, Dickinson E (2004) J Chem Phys 121:3775
94. Bermudez H, Hammer DA, Discher DE (2004) Langmuir 20:540
95. Espanol P, Warren PB (1995) Europhys Lett 30:191
96. Groot RD, Warren PB (1997) J Chem Phys 107:4423
97. Warren PB (1998) Curr Opin Colloid Interface Sci 3:620
98. Kranenburg M, Venturoli M, Smit B (2003) J Phys Chem B. 107:11491
99. Shillock JC, Lipowsky R (2002) J Chem Phys 117:5048
100. Groot RD, Rabone KL (2001) Biophys J 81:725
101. Kranenburg M, Smit B (2005) J Phys Chem B. 109:6553
102. Gao L, Shillcock JC, Lipowsky R (2007) J Chem Phys 126:015101
103. Grafmüller A, Shillcock JC, Lipowsky R (2007) Phys Rev Lett 98:218101
104. Gao L, Lipowsky R, Shillcock JC (2008) Soft Matter 4:1208
105. Shillcock JC, Lipowsky R (2005) Nat Mater 4:225
106. Monck JR, de Toledo GA, Fernandez JM (1990) PNAS 87:7804
107. Yamamoto S, Hyodo S (2003) J Chem Phys 118:7937
108. Laradji M, Kumar PBS (2004) Phys Rev Lett 93:198105
109. Miao L, Seifert U, Wortis M, Döbereiner HG (1994) Phys Rev E. 49:5389
110. Drouffe JM, Maggs AC, Leibler S (1991) Science 254:1353
111. Noguchi H, Takasu MP (2001) J Chem Phys 115:9547
112. Noguchi H, Takasu MP (2002) Phys Rev E. 65:051907
113. Farago O (2003) J Chem Phys 119:596
114. Cooke IR, Kremer K, Deserno M (2005) Phys Rev E. 72:011506
115. Cooke IR, Deserno M (2005) J Chem Phys 123:224710
116. Brannigan G, Philips PE, Brown FLH (2005) Phys Rev E. 72:011915
117. Harmandaris VA, Deserno M (2006) J Chem Phys 125:204905
118. Reynwar BJ, Illya G, Harmandaris VA, Müller MM, Kremer K, Deserno M (2007) Nature 447:461
119. Laradji M, Guo H, Zuckermann MJ (1994) J Phys Rev E. 49:3199
120. Soga KG, Zuckermann MJ, Guo H (1996) Macromolecules 29:2289
121. Miao L, Guo H, Zuckermann MJ (1996) Macromolecules 29:2289
122. Daoulas KCh, Müller M (2006) J Chem Phys 125:184904
123. Kang H, Detcheverry FA, Mangham AN, Stoykovich MP, Daoulas KCh, Hamers RJ, Müller M, de Pablo JJ, Nealey PF (2008) Phys Rev Lett 100:148303
124. Müller M, Smith GD (2005) J Polym Sci B Polym Phys 43:934
125. Hong KM, Noolandi J (1981) Macromolecules 14:727
126. Matsen MW, Schick M (1994) Phys Rev Lett 72:2660
127. Fredrickson GH, Ganesan V, Drolet F (2002) Macromolecules 35:16
128. Müller M, Schmid F (2005) Adv Polym Sci 185:1
129. Fredrickson GH (2005) The equilibrium theory of inhomogeneous polymers. Oxford University Press, Oxford
130. Katsov K, Müller M, Schick M (2004) Biophys J 87:3277
131. Katsov K, Müller M, Schick M (2006) Biophys J 90:915
132. Lee JY, Schick M (2008) Biophys J 94:1699
133. Helfand E, Tagami Y (1971) J Chem Phys 56:3592
134. Frink LJD, Frischknecht A (2005) Phys Rev E. 72:041923
135. Frischknecht A, Frink LJD (2006) Biophys J 91:4081
136. Müller M, Daoulas KCh (2008) J Chem Phys 128:024903
137. Müller M, Daoulas KCh (2008) J Chem Phys 129:164906
138. Müller M, MacDowell LG, Virnau P, Binder K (2002) J Chem Phys 117:5480
139. Eastwood JW, Hockney RW, Lawrence DN (1980) Comput Phys Commun 19: 215
140. Deserno M, Holm C (1998) J Chem Phys 109:7678
141. Canham PB (1970) J Theor Biol 26:61
142. Farago O (2008) J Chem Phys 128:184105
143. Karplus M, McCammon JA (2002) Nat Struct Biol 9:646
144. de Gennes PG (1979) Scaling concepts in polymer physics. Cornell University Press, New York
145. Rubinstein M, Colby RH (2003) Polymer physics. Oxford University Press, New York
146. Nam J, Santore M (2007) Langmuir 23:10650