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Volumn 11, Issue , 2010, Pages

SKPDB: A structural database of shikimate pathway enzymes

Author keywords

[No Author keywords available]

Indexed keywords

DOCKING SIMULATIONS; METABOLIC PATHWAYS; RELATIONAL DATABASE; SHIKIMATE PATHWAY; STRUCTURAL DATABASE; STRUCTURAL MODELS; STRUCTURE-BASED DRUG DESIGN; VIRTUAL SCREENING;

EID: 77349112482     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-12     Document Type: Article
Times cited : (29)

References (27)
  • 1
    • 12844260161 scopus 로고    scopus 로고
    • Comparative Protein Structure Modeling and its Applications to Drug Discovery
    • Jacobson M, Sali A. Comparative Protein Structure Modeling and its Applications to Drug Discovery. Annu Rep Medic Chem 2004, 39:259-276.
    • (2004) Annu Rep Medic Chem , vol.39 , pp. 259-276
    • Jacobson, M.1    Sali, A.2
  • 2
    • 0025581736 scopus 로고
    • The shikimate pathway - A metabolic tree with many branches
    • 10.3109/10409239009090615, 2279393
    • Bentley R. The shikimate pathway - A metabolic tree with many branches. Crit Rev Biochem Mol Biol 1990, 25:307-384. 10.3109/10409239009090615, 2279393.
    • (1990) Crit Rev Biochem Mol Biol , vol.25 , pp. 307-384
    • Bentley, R.1
  • 4
    • 46449116763 scopus 로고    scopus 로고
    • Targets for development of drugs against orphan diseases
    • De Azevedo WF. Targets for development of drugs against orphan diseases. Current Drug Targets 2007, 8(3):387-387.
    • (2007) Current Drug Targets , vol.8 , Issue.3 , pp. 387-387
    • De Azevedo, W.F.1
  • 6
    • 0000055469 scopus 로고
    • The biology of the Mycobacteria
    • London: Academic Press, Ratledge C, Stanford JL
    • Ratledge C, Stanford JL. The biology of the Mycobacteria. Nutrition, growth and metabolism 1982, 1:185-271. London: Academic Press, Ratledge C, Stanford JL.
    • (1982) Nutrition, growth and metabolism , vol.1 , pp. 185-271
    • Ratledge, C.1    Stanford, J.L.2
  • 8
    • 47249154017 scopus 로고    scopus 로고
    • Dynamics of glyphosate-induced conformational changes of Mycobacterium tuberculosis 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) determined by hydrogen-deuterium exchange and electrospray mass spectrometry
    • 10.1021/bi800134y, 18558720
    • Marques MR, Vaso A, Neto JR, Fossey MA, Oliveira JS, Basso LA, dos Santos DS, de Azevedo WF, Palma MS. Dynamics of glyphosate-induced conformational changes of Mycobacterium tuberculosis 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) determined by hydrogen-deuterium exchange and electrospray mass spectrometry. Biochemistry 2008, 47(28):7509-7522. 10.1021/bi800134y, 18558720.
    • (2008) Biochemistry , vol.47 , Issue.28 , pp. 7509-7522
    • Marques, M.R.1    Vaso, A.2    Neto, J.R.3    Fossey, M.A.4    Oliveira, J.S.5    Basso, L.A.6    dos Santos, D.S.7    de Azevedo, W.F.8    Palma, M.S.9
  • 9
    • 0033970022 scopus 로고    scopus 로고
    • Expectations from structural genomics
    • Brenner SE, Levitt M. Expectations from structural genomics. Proteins Sci 2000, 9:197-200.
    • (2000) Proteins Sci , vol.9 , pp. 197-200
    • Brenner, S.E.1    Levitt, M.2
  • 10
    • 33745076219 scopus 로고    scopus 로고
    • Advances in Homology Protein Structure Modeling
    • 10.2174/138920306777452312, 1839925, 16787261
    • Xiang Z. Advances in Homology Protein Structure Modeling. Curr Protein Pept Sci 2006, 7(3):217-227. 10.2174/138920306777452312, 1839925, 16787261.
    • (2006) Curr Protein Pept Sci , vol.7 , Issue.3 , pp. 217-227
    • Xiang, Z.1
  • 11
    • 0027136282 scopus 로고
    • Comparative Protein Modelling by Satisfaction of Spatial Restraints
    • 10.1006/jmbi.1993.1626, 8254673
    • Sali A, Blundell TL. Comparative Protein Modelling by Satisfaction of Spatial Restraints. J Mol Biol 1993, 234:779-815. 10.1006/jmbi.1993.1626, 8254673.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 12
    • 0032506030 scopus 로고    scopus 로고
    • Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
    • 10.1073/pnas.95.23.13597, 24864, 9811845
    • Sánchez R, Sali A. Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc Natl Acad Sci USA 1998, 95:13597-13602. 10.1073/pnas.95.23.13597, 24864, 9811845.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 13597-13602
    • Sánchez, R.1    Sali, A.2
  • 15
    • 15044362791 scopus 로고    scopus 로고
    • Homology Modeling
    • Hoboken, NJ: Wiley-Liss, Bourne PE, Weissig H
    • Bourne PE, Weissig H. Homology Modeling. Structural Bioinformatics 2003, 509-524. Hoboken, NJ: Wiley-Liss, Bourne PE, Weissig H.
    • (2003) Structural Bioinformatics , pp. 509-524
    • Bourne, P.E.1    Weissig, H.2
  • 18
    • 0033810049 scopus 로고    scopus 로고
    • Modeling of loops in protein structures
    • 10.1110/ps.9.9.1753, 2144714, 11045621
    • Fiser A, Do RK, Sali A. Modeling of loops in protein structures. Protein Sci 2000, 9:1753-1773. 10.1110/ps.9.9.1753, 2144714, 11045621.
    • (2000) Protein Sci , vol.9 , pp. 1753-1773
    • Fiser, A.1    Do, R.K.2    Sali, A.3
  • 20
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • 10.1016/0022-2836(70)90057-4, 5420325
    • Needleman S, Wunsch C. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48:443-453. 10.1016/0022-2836(70)90057-4, 5420325.
    • (1970) J Mol Biol , vol.48 , pp. 443-453
    • Needleman, S.1    Wunsch, C.2
  • 22
    • 0000243829 scopus 로고
    • PROCHECK - A program to check the stereochemical quality of protein structures
    • Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK - A program to check the stereochemical quality of protein structures. J Appl Cryst 1993, 26:283-291.
    • (1993) J Appl Cryst , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 23
    • 0003769049 scopus 로고
    • X-PLOR version 3.1. A System for X-ray Crystallography and NMR
    • New Haven: Yale University Press
    • Brünger A T. X-PLOR version 3.1. A System for X-ray Crystallography and NMR. 1992, New Haven: Yale University Press.
    • (1992)
    • Brünger, A.T.1
  • 24
    • 0025997601 scopus 로고
    • Assessment of protein models with three-dimensional profiles
    • 10.1002/prot.340100307, 1881879
    • Lüthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Proteins 1991, 10:229-239. 10.1002/prot.340100307, 1881879.
    • (1991) Proteins , vol.10 , pp. 229-239
    • Lüthy, R.1    Bowie, J.U.2    Eisenberg, D.3
  • 25
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known three- dimensional structure
    • 10.1126/science.1853201, 1853201
    • JU B, R L, D E. A method to identify protein sequences that fold into a known three- dimensional structure. Science 1991, 253:164-170. 10.1126/science.1853201, 1853201.
    • (1991) Science , vol.253 , pp. 164-170
    • JU, B.1    R, L.2    D, E.3
  • 26
    • 58149191270 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt) 2009
    • 10.1093/nar/gkn664, 2686606, 18836194, The UniProt Consortium
    • The UniProt Consortium The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res 2009, 37:D169-D174. 10.1093/nar/gkn664, 2686606, 18836194, The UniProt Consortium.
    • (2009) Nucleic Acids Res , vol.37


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