-
1
-
-
33845381928
-
The posterior and the prior in Bayesian phylogenetics
-
ALFARO, M. E. & M. T. HOLDER, 2006, The posterior and the prior in Bayesian phylogenetics. Annual Review of Ecology, Evolution and Systematics, 37: 19-42.
-
(2006)
Annual Review of Ecology, Evolution and Systematics
, vol.37
, pp. 19-42
-
-
ALFARO, M.E.1
HOLDER, M.T.2
-
2
-
-
0034484649
-
On becoming cemented: Evolutionary relationships among the genera in the freshwater bivalve family Etheriidae (Bivalvia: Unionoida)
-
E. M. HARPER, J. D. TAYLOR & J. A. CRANE, eds, Geological Society, Special Publication, London
-
BOGAN, A. E. & W. R. HOEH, 2000, On becoming cemented: evolutionary relationships among the genera in the freshwater bivalve family Etheriidae (Bivalvia: Unionoida). In: E. M. HARPER, J. D. TAYLOR & J. A. CRANE, eds., The evolutionary biology of the Bivalvia. Geological Society, Special Publication, London, 177: 159-168.
-
(2000)
The evolutionary biology of the Bivalvia
, vol.177
, pp. 159-168
-
-
BOGAN, A.E.1
HOEH, W.R.2
-
3
-
-
34547870541
-
The unusual system of doubly uniparental inheritance of mtDNA: Isn't one enough?
-
BRETON, S., H. D. BEAUPRÉ, D. T. STEWART, W. R. HOEH & P. U. BLIER, 2007, The unusual system of doubly uniparental inheritance of mtDNA: isn't one enough? Trends in Genetics, 23: 465-47'.
-
(2007)
Trends in Genetics
, vol.23
, pp. 465-547
-
-
BRETON, S.1
BEAUPRÉ, H.D.2
STEWART, D.T.3
HOEH, W.R.4
BLIER, P.U.5
-
4
-
-
23444437628
-
Phylogeny of North American amblemines (Bivalvia, Unionoida): Prodigious polyphyly proves pervasive across genera
-
CAMPBELL, D. C., J. M. SERB, J. E. BUHAY, K. J. ROE, R. L. MINTON & C. LYDEARD, 2005, Phylogeny of North American amblemines (Bivalvia, Unionoida): prodigious polyphyly proves pervasive across genera. Invertebrate Biology, 124: 131-164.
-
(2005)
Invertebrate Biology
, vol.124
, pp. 131-164
-
-
CAMPBELL, D.C.1
SERB, J.M.2
BUHAY, J.E.3
ROE, K.J.4
MINTON, R.L.5
LYDEARD, C.6
-
6
-
-
8444222732
-
Prospects for building the tree of life from large sequence databases
-
DRISKELL, A. , J. G. BURLEIGH, M. M. MCMAHON, B. C. C. MEARA & M. J. SANDERSON, 2004, Prospects for building the tree of life from large sequence databases. Science, 306: 1172-1174.
-
(2004)
Science
, vol.306
, pp. 1172-1174
-
-
DRISKELL, A.1
BURLEIGH, J.G.2
MCMAHON, M.M.3
MEARA, B.C.C.4
SANDERSON, M.J.5
-
7
-
-
0004128472
-
-
Cambridge University Press, Cambridge, 252 pp
-
EDWARDS, A. W F., 1972, Likelihood. Cambridge University Press, Cambridge, 252 pp.
-
(1972)
Likelihood
-
-
EDWARDS, A.W.F.1
-
8
-
-
34250793279
-
Sexual selection and trichromatic color vision in primates: Statistical support for the preexistingbias hypothesis
-
FERNANDEZ, A. A. & M. R. MORRIS, 2007, Sexual selection and trichromatic color vision in primates: statistical support for the preexistingbias hypothesis. American Naturalist, 170: 10-20.
-
(2007)
American Naturalist
, vol.170
, pp. 10-20
-
-
FERNANDEZ, A.A.1
MORRIS, M.R.2
-
9
-
-
14844313275
-
Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree
-
GADAGKAR, M., S. ROSENBERG & S. KUMAR, 2005, Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. Journal of Experimental Zoology, Part B: Molecular and Developmental Evolution, 340B: 64-74.
-
(2005)
Journal of Experimental Zoology, Part B: Molecular and Developmental Evolution
, vol.340 B
, pp. 64-74
-
-
GADAGKAR, M.1
ROSENBERG, S.2
KUMAR, S.3
-
11
-
-
33750997580
-
Palaeoheterodont diversity (Mollusca: Trigonoida + Unionoida): what we know and what we wish we knew about freshwater mussel evolution
-
R. BIELER, ed
-
GRAF, D. L. & K. S. CUMMMINGS, 2006, Palaeoheterodont diversity (Mollusca: Trigonoida + Unionoida): what we know and what we wish we knew about freshwater mussel evolution. In: R. BIELER, ed., Bivalvia - a look at the branches. Zoological Journal of the Linnean Society, 148: 343-394.
-
(2006)
Bivalvia - a look at the branches. Zoological Journal of the Linnean Society
, vol.148
, pp. 343-394
-
-
GRAF, D.L.1
CUMMMINGS, K.S.2
-
12
-
-
0034069886
-
The evolution of brooding characters among the freshwater pearly mussels (Mollusca: Bivalvia: Unionoidea) of North America
-
GRAF, D. L. & D. Ó FOIGHIL, 2000, The evolution of brooding characters among the freshwater pearly mussels (Mollusca: Bivalvia: Unionoidea) of North America. Journal of Molluscan Studies, 66: 157-170.
-
(2000)
Journal of Molluscan Studies
, vol.66
, pp. 157-170
-
-
GRAF, D.L.1
FOIGHIL, D.O.2
-
13
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
GRAYBEAL, A., 1998, Is it better to add taxa or characters to a difficult phylogenetic problem? Systematic Biology, 47: 9-17.
-
(1998)
Systematic Biology
, vol.47
, pp. 9-17
-
-
GRAYBEAL, A.1
-
14
-
-
49349134286
-
Anatomical features of Modellnaia siamensis (Mollusca, Bivalvia, Unionidae)
-
HEARD, W. H. & G. W. HANNING, 1978, Anatomical features of Modellnaia siamensis (Mollusca, Bivalvia, Unionidae). Zoologica Scripta, 7: 219-223.
-
(1978)
Zoologica Scripta
, vol.7
, pp. 219-223
-
-
HEARD, W.H.1
HANNING, G.W.2
-
15
-
-
0032023889
-
Taxonomic sampling, phylogenetic accuracy, and investigator bias
-
HILLIS, D. M., 1998, Taxonomic sampling, phylogenetic accuracy, and investigator bias. Systematic Biology, 47: 3-8.
-
(1998)
Systematic Biology
, vol.47
, pp. 3-8
-
-
HILLIS, D.M.1
-
16
-
-
0032325410
-
Testing alternative hypotheses of Neotrigonia (Bivalvia: Trigonioida) phylogenetic relationships using cytochrome c oxidase subunit 1 DNA sequences
-
HOEH, W. R., M. B. BLACK, R. GUSTAFSON, A. E. BOGAN, R. A. LUTZ & R. C. VRIJENHOEK, 1998, Testing alternative hypotheses of Neotrigonia (Bivalvia: Trigonioida) phylogenetic relationships using cytochrome c oxidase subunit 1 DNA sequences. Malacologia, 40: 267-278.
-
(1998)
Malacologia
, vol.40
, pp. 267-278
-
-
HOEH, W.R.1
BLACK, M.B.2
GUSTAFSON, R.3
BOGAN, A.E.4
LUTZ, R.A.5
VRIJENHOEK, R.C.6
-
17
-
-
0001182661
-
Evolutionary relationships among the higher taxa of freshwater mussels (Bivalvia: Unionoida): Inferences on phylogeny and character evolution from analyses of DNA sequence data
-
HOEH, W. R., A. E. BOGAN, K. S. CUMMINGS & S. I. GUTTMAN, 2002, Evolutionary relationships among the higher taxa of freshwater mussels (Bivalvia: Unionoida): Inferences on phylogeny and character evolution from analyses of DNA sequence data. Malacological Review, 31/32: 123-141.
-
(2002)
Malacological Review
, vol.31-32
, pp. 123-141
-
-
HOEH, W.R.1
BOGAN, A.E.2
CUMMINGS, K.S.3
GUTTMAN, S.I.4
-
18
-
-
77149154892
-
-
HOEH, W. R., A. E. BOGAN & W. H. HEARD, 2001, A phylogenetic perspective on the evolution of morphological and reproductive characteristics in the Unionoida. Pp. 257-280, in: G. BAUER & K. WÄCHTLER, eds., Ecology and evolution of the freshwater mussels Unionoida. Ecological Studies, 145. Springer-Verlag, Berlin, xxii + 394 pp.
-
HOEH, W. R., A. E. BOGAN & W. H. HEARD, 2001, A phylogenetic perspective on the evolution of morphological and reproductive characteristics in the Unionoida. Pp. 257-280, in: G. BAUER & K. WÄCHTLER, eds., Ecology and evolution of the freshwater mussels Unionoida. Ecological Studies, Volume 145. Springer-Verlag, Berlin, xxii + 394 pp.
-
-
-
-
19
-
-
0030498718
-
Multiple origins of gender-associated mitochondrial DNA lineages in bivalves (Mollusca: Bivalvia)
-
HOEH, W. R., D. T. STEWART, B. W. SUTHERLAND & E. ZOUROS, 1996, Multiple origins of gender-associated mitochondrial DNA lineages in bivalves (Mollusca: Bivalvia). Evolution, 50: 2276-2286.
-
(1996)
Evolution
, vol.50
, pp. 2276-2286
-
-
HOEH, W.R.1
STEWART, D.T.2
SUTHERLAND, B.W.3
ZOUROS, E.4
-
20
-
-
2442671519
-
Bayesian phylogenetic model selection using reversible jump markov chain Monte Carlo
-
HUELSENBECK, J. P., B. LARGET & E. ALFARO, 2004, Bayesian phylogenetic model selection using reversible jump markov chain Monte Carlo. Molecular Biology and Evolution, 21: 1123-1133.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1123-1133
-
-
HUELSENBECK, J.P.1
LARGET, B.2
ALFARO, E.3
-
21
-
-
0034849408
-
MrBayes: Bayesian inference of phylogeny
-
HUELSENBECK, J. P. & F. RONQUIST, 2001, MrBayes: Bayesian inference of phylogeny. Bioinformatics, 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
HUELSENBECK, J.P.1
RONQUIST, F.2
-
22
-
-
41549131274
-
Multigene phylogeny of the Mustelidae: Resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation
-
KOEPFLI, K-P, K A. DEERE, G. J. SLATER, C. BEGG, K. BEGG, L. GRASSMAN, M. LUCHERINI, G. VERON & R. K WAYNE, 2008, Multigene phylogeny of the Mustelidae: Resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. BMC Biology, 6: 10.
-
(2008)
BMC Biology
, vol.6
, pp. 10
-
-
KOEPFLI, K.-P.1
DEERE, K.A.2
SLATER, G.J.3
BEGG, C.4
BEGG, K.5
GRASSMAN, L.6
LUCHERINI, M.7
VERON, G.8
WAYNE, R.K.9
-
23
-
-
36448991500
-
-
LARKIN, M. A, G. BLACKSHIELDS, N. P. BROWN, R. CHENNA, P. A. MCGETTIGAN, H. MCWILLIAM, F. VALENTIN, I. M. WALLACE, A. WILM, R. LOPEZ, J. D. THOMPSON, T. J. GIBSON & D. G. HIGGINS, 2007, Clustal W and Clustal X version 2.0. Bioinformatics, 23: 2947-2948
-
LARKIN, M. A., G. BLACKSHIELDS, N. P. BROWN, R. CHENNA, P. A. MCGETTIGAN, H. MCWILLIAM, F. VALENTIN, I. M. WALLACE, A. WILM, R. LOPEZ, J. D. THOMPSON, T. J. GIBSON & D. G. HIGGINS, 2007, Clustal W and Clustal X version 2.0. Bioinformatics, 23: 2947-2948.
-
-
-
-
24
-
-
0035527396
-
A likelihood approach to estimating phylogeny from discrete morphological character data
-
LEWIS, P. O., 2001a, A likelihood approach to estimating phylogeny from discrete morphological character data. Systematic Biology, 50: 913-925.
-
(2001)
Systematic Biology
, vol.50
, pp. 913-925
-
-
LEWIS, P.O.1
-
25
-
-
0035145155
-
Phylogenetic systematics turns over a new leaf
-
LEWIS, P. O., 2001b, Phylogenetic systematics turns over a new leaf. Trends in Ecology and Evolution, 16: 30-37.
-
(2001)
Trends in Ecology and Evolution
, vol.16
, pp. 30-37
-
-
LEWIS, P.O.1
-
26
-
-
19044373497
-
Polytomies and Bayesian phylogenetic inference
-
LEWIS, P. O., M. T. HOLDER & K E. HOLSINGER, 2005, Polytomies and Bayesian phylogenetic inference. Systematic Biology, 54: 241-253.
-
(2005)
Systematic Biology
, vol.54
, pp. 241-253
-
-
LEWIS, P.O.1
HOLDER, M.T.2
HOLSINGER, K.E.3
-
27
-
-
33750588239
-
Confounding asymmetries in evolutionary diversification and character change
-
MADDISON, W. P., 2006, Confounding asymmetries in evolutionary diversification and character change. Evolution, 60: 1743-1746.
-
(2006)
Evolution
, vol.60
, pp. 1743-1746
-
-
MADDISON, W.P.1
-
28
-
-
77149130098
-
-
MADDISON, W P. & D. R. MADDISON, 2008, Mesquite: a modular system for evolutionary analysis. Version 2.6
-
MADDISON, W P. & D. R. MADDISON, 2008, Mesquite: a modular system for evolutionary analysis. Version 2.6.
-
-
-
-
29
-
-
33845276216
-
When ontogeny reveals what phylogeny hides: Gain and loss of horns during development and evolution of horned beetles
-
MOCZEK, A. P., T. E. CRUICKSHANK & A. SHELBY, 2006, When ontogeny reveals what phylogeny hides: gain and loss of horns during development and evolution of horned beetles. Evolution, 60: 2329-2341.
-
(2006)
Evolution
, vol.60
, pp. 2329-2341
-
-
MOCZEK, A.P.1
CRUICKSHANK, T.E.2
SHELBY, A.3
-
30
-
-
0033422612
-
Reconstructing ancestor states with maximum likelihood: Support for one-and two-rate models
-
MOOERS, A. O. & D. SCHLUTER, 1999, Reconstructing ancestor states with maximum likelihood: support for one-and two-rate models. Systematic Biology, 48: 623-633.
-
(1999)
Systematic Biology
, vol.48
, pp. 623-633
-
-
MOOERS, A.O.1
SCHLUTER, D.2
-
31
-
-
34547701918
-
Phylogeny of the platygastroid wasps (Hymenoptera) based on sequences from the 18S rRNA, 28S rRNA and cytochrome oxidase I genes: Implications for the evolution of the ovipositor system and host relationships
-
MURPHY, N. P., D. CAREY, L. R. CASTRO, M. DOWTON & A. D. AUSTIN, 2007, Phylogeny of the platygastroid wasps (Hymenoptera) based on sequences from the 18S rRNA, 28S rRNA and cytochrome oxidase I genes: implications for the evolution of the ovipositor system and host relationships. Biological Journal of the Linnean Society, 91: 653-669.
-
(2007)
Biological Journal of the Linnean Society
, vol.91
, pp. 653-669
-
-
MURPHY, N.P.1
CAREY, D.2
CASTRO, L.R.3
DOWTON, M.4
AUSTIN, A.D.5
-
32
-
-
0001424987
-
Notes upon the families and genera of the najades
-
pls. 18-20
-
ORTMANN, A. E., 1912, Notes upon the families and genera of the najades. Annals of the Carnegie Museum, 8: 222-365, pls. 18-20.
-
(1912)
Annals of the Carnegie Museum
, vol.8
, pp. 222-365
-
-
ORTMANN, A.E.1
-
33
-
-
0001623492
-
South American naiades; a contribution to the knowledge of the freshwater mussels of South America
-
pls. 34-48
-
ORTMANN, A. E., 1921, South American naiades; a contribution to the knowledge of the freshwater mussels of South America. Memoirs of the Carnegie Museum, 8: 451-670, pls. 34-48.
-
(1921)
Memoirs of the Carnegie Museum
, vol.8
, pp. 451-670
-
-
ORTMANN, A.E.1
-
34
-
-
0028097770
-
Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters
-
PAGEL, M., 1994, Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters. Proceedings of the Royal Society of London, Series B, 255: 37-45.
-
(1994)
Proceedings of the Royal Society of London, Series B
, vol.255
, pp. 37-45
-
-
PAGEL, M.1
-
35
-
-
0031421806
-
Inferring evolutionary processes from phylogenies
-
PAGEL, M., 1997, Inferring evolutionary processes from phylogenies. Zoologica Scripta, 26:331-348.
-
(1997)
Zoologica Scripta
, vol.26
, pp. 331-348
-
-
PAGEL, M.1
-
36
-
-
0033422611
-
The maximum likelihood approach to reconstructing ancestral character states on phylogenies
-
PAGEL, M., 1999, The maximum likelihood approach to reconstructing ancestral character states on phylogenies. Systematic Biology, 48: 612-622.
-
(1999)
Systematic Biology
, vol.48
, pp. 612-622
-
-
PAGEL, M.1
-
37
-
-
0006182721
-
Some noteworthy examples of parallel evolution in the molluscan faunas of South-eastern Asia and South America
-
PRASHAD, B., 1931, Some noteworthy examples of parallel evolution in the molluscan faunas of South-eastern Asia and South America. Proceedings of the Royal Society of Edinburgh, Section B: Biology, 51: 42-53.
-
(1931)
Proceedings of the Royal Society of Edinburgh, Section B: Biology
, vol.51
, pp. 42-53
-
-
PRASHAD, B.1
-
38
-
-
0025267792
-
The general stochastic model of nucleotide substitution
-
RODRIGUEZ, F., J. L. OLIVER, A. MARIN & J. R. MEDINA, 1990, The general stochastic model of nucleotide substitution. Journal of Theoretical Biology, 142: 485-501.
-
(1990)
Journal of Theoretical Biology
, vol.142
, pp. 485-501
-
-
RODRIGUEZ, F.1
OLIVER, J.L.2
MARIN, A.3
MEDINA, J.R.4
-
39
-
-
77149148652
-
-
ROE, K J. & W R. HOEH, 2003, Systematics of freshwater mussels (Bivalvia: Unionoida). Pp. 91-122, in: C. LYDEARD & D. R. LINDBERG, eds., Molecular systematics and phylogeography of mollusks. Smithsonian Books, Washington, xiii + 312 pp.
-
ROE, K J. & W R. HOEH, 2003, Systematics of freshwater mussels (Bivalvia: Unionoida). Pp. 91-122, in: C. LYDEARD & D. R. LINDBERG, eds., Molecular systematics and phylogeography of mollusks. Smithsonian Books, Washington, xiii + 312 pp.
-
-
-
-
40
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
RONQUIST, F. & J. P. HUELSENBECK, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
RONQUIST, F.1
HUELSENBECK, J.P.2
-
42
-
-
0042695888
-
The challenge of constructing large phylogenetic trees
-
SANDERSON, M. J. & A. C. DRISKELL, 2003, The challenge of constructing large phylogenetic trees. Trends in Plant Science, 8: 374-379.
-
(2003)
Trends in Plant Science
, vol.8
, pp. 374-379
-
-
SANDERSON, M.J.1
DRISKELL, A.C.2
-
43
-
-
0038158155
-
Obtaining maximal concatenated phylogenetic data sets from large sequence databases
-
SANDERSON, M. J., A. C. DRISKELL, R. H. REE, O. EULENSTEIN & S. LANGLEY, 2003, Obtaining maximal concatenated phylogenetic data sets from large sequence databases. Molecular Biology and Evolution, 20: 1036-1042.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 1036-1042
-
-
SANDERSON, M.J.1
DRISKELL, A.C.2
REE, R.H.3
EULENSTEIN, O.4
LANGLEY, S.5
-
44
-
-
0034141322
-
Branchiopod monophyly and interordinal phylogeny inferred from 18s ribosomal DNA
-
SPEARS, T. & L. G. ABELE, 2000, Branchiopod monophyly and interordinal phylogeny inferred from 18s ribosomal DNA. Journal of Crustacean Biology, 20: 1-24.
-
(2000)
Journal of Crustacean Biology
, vol.20
, pp. 1-24
-
-
SPEARS, T.1
ABELE, L.G.2
-
46
-
-
31444436506
-
Taxonomic distribution and phylogenetic utility of gender-associated mitochondrial genomes in the Unionoida (Bivalvia)
-
WALKER, J. M., J. P. CUROLE, D. E. WADE, E. G. CHAPMAN, A. E. BOGAN, G. T. WATTERS & W. R. HOEH, 2006, Taxonomic distribution and phylogenetic utility of gender-associated mitochondrial genomes in the Unionoida (Bivalvia). Malacologia, 48: 265-282.
-
(2006)
Malacologia
, vol.48
, pp. 265-282
-
-
WALKER, J.M.1
CUROLE, J.P.2
WADE, D.E.3
CHAPMAN, E.G.4
BOGAN, A.E.5
WATTERS, G.T.6
HOEH, W.R.7
-
47
-
-
77149176838
-
-
WATTERS, G. T., 2001, The evolution of the Unionacea in North America, and its implica tions for the worldwide fauna. Pp. 281-30, in: G. BAUER & K. WÄCHTLER, eds., Ecology and evolution of the freshwater mussels (Unionoida). Springer-Verlag, Berlin, xxii + 394 pp.
-
WATTERS, G. T., 2001, The evolution of the Unionacea in North America, and its implica tions for the worldwide fauna. Pp. 281-30, in: G. BAUER & K. WÄCHTLER, eds., Ecology and evolution of the freshwater mussels (Unionoida). Springer-Verlag, Berlin, xxii + 394 pp.
-
-
-
|