-
1
-
-
0037480741
-
A Bayesian approach to operon prediction
-
10.1093/bioinformatics/btg147, 12835266
-
Bockhorst J, Craven M, Page D, Shavlik J, Glasner J. A Bayesian approach to operon prediction. Bioinformatics 2003, 19:1227-1235. 10.1093/bioinformatics/btg147, 12835266.
-
(2003)
Bioinformatics
, vol.19
, pp. 1227-1235
-
-
Bockhorst, J.1
Craven, M.2
Page, D.3
Shavlik, J.4
Glasner, J.5
-
2
-
-
0037941585
-
Module networks: identifying regulatory modules and their condition specific regulators from gene expression data
-
10.1038/ng1165, 12740579
-
Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N. Module networks: identifying regulatory modules and their condition specific regulators from gene expression data. Nature Genetics 2003, 34:166-176. 10.1038/ng1165, 12740579.
-
(2003)
Nature Genetics
, vol.34
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
4
-
-
10044280457
-
Learning module networks from genome-wide location and expression data
-
Xu X, Wang L, Ding D. Learning module networks from genome-wide location and expression data. FEBS Letters 2004, 587:297-304.
-
(2004)
FEBS Letters
, vol.587
, pp. 297-304
-
-
Xu, X.1
Wang, L.2
Ding, D.3
-
6
-
-
25644453369
-
Learning dynamic Bayesian network models via cross-validation
-
Peña JM, Björkegren J, Tegnér. Learning dynamic Bayesian network models via cross-validation. Pattern Recognition Letters 2005, 26:2295-2308.
-
(2005)
Pattern Recognition Letters
, vol.26
, pp. 2295-2308
-
-
Peña, J.M.1
Björkegren, J.2
Tegnér3
-
7
-
-
46149134436
-
Fusion, propagation, and structuring in belief networks
-
Pearl J. Fusion, propagation, and structuring in belief networks. Artificial Intelligence 1986, 29:241-288.
-
(1986)
Artificial Intelligence
, vol.29
, pp. 241-288
-
-
Pearl, J.1
-
8
-
-
0030124955
-
A guide to the literature on learning probabilistic networks from data
-
Buntine WL. A guide to the literature on learning probabilistic networks from data. IEEE Transactions on Knowledge and Data Engineering 1996, 8:195-210.
-
(1996)
IEEE Transactions on Knowledge and Data Engineering
, vol.8
, pp. 195-210
-
-
Buntine, W.L.1
-
9
-
-
0002370418
-
A tutorial on learning with Bayesian networks
-
Dordrecht: Kluwer Academic Publishers, Jordan MI
-
Heckerman D. A tutorial on learning with Bayesian networks. Learning in graphical models 1998, 301. Dordrecht: Kluwer Academic Publishers, Jordan MI.
-
(1998)
Learning in graphical models
, pp. 301
-
-
Heckerman, D.1
-
10
-
-
0037262841
-
Being Bayesian about network Structure. A Bayesian approach to structure discovery in Bayesian networks
-
Friedman N, Koller D. Being Bayesian about network Structure. A Bayesian approach to structure discovery in Bayesian networks. Machine Learning 2003, 50:95-125.
-
(2003)
Machine Learning
, vol.50
, pp. 95-125
-
-
Friedman, N.1
Koller, D.2
-
13
-
-
1042275290
-
Evaluating machine learning approaches for aiding probe selection for gene-expression arrays
-
Tobler JB, Molla MN, Nuwaysir EF, Green RD, Shavlik JW. Evaluating machine learning approaches for aiding probe selection for gene-expression arrays. Bioinformatics 2002, 18:S164-S171.
-
(2002)
Bioinformatics
, vol.18
-
-
Tobler, J.B.1
Molla, M.N.2
Nuwaysir, E.F.3
Green, R.D.4
Shavlik, J.W.5
-
14
-
-
0000629975
-
Cross-validatory choice and assessment of statistical predictions (with discussion)
-
Stone M. Cross-validatory choice and assessment of statistical predictions (with discussion). Journal of the Royal Statistical Society B 1974, 36:111-147.
-
(1974)
Journal of the Royal Statistical Society B
, vol.36
, pp. 111-147
-
-
Stone, M.1
-
15
-
-
0003763626
-
Wrapper for performance enhancement and oblivious decision graphs
-
Stanford University, Computer Science Department
-
Kohavi R. Wrapper for performance enhancement and oblivious decision graphs. PhD thesis 1995, Stanford University, Computer Science Department.
-
(1995)
PhD thesis
-
-
Kohavi, R.1
-
16
-
-
33144486498
-
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
-
10.1186/1471-2105-7-43, 1373604, 16438721
-
Bulcke T, Van Leemput K, Naudts B, Van Remortel P, Ma H, Verschoren A, De Moor B, Marchal K. SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics 2006, 7:43. 10.1186/1471-2105-7-43, 1373604, 16438721.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 43
-
-
Bulcke, T.1
Van Leemput, K.2
Naudts, B.3
Van Remortel, P.4
Ma, H.5
Verschoren, A.6
De Moor, B.7
Marchal, K.8
-
17
-
-
33747424762
-
Significance of gene ranking for classification of microarray samples
-
10.1109/TCBB.2006.42, 17048468
-
Zhang C, Lu X, Zhang X. Significance of gene ranking for classification of microarray samples. IEEE Transactions on Computational Biology and Bioinformatics 2006, 3:312-320. 10.1109/TCBB.2006.42, 17048468.
-
(2006)
IEEE Transactions on Computational Biology and Bioinformatics
, vol.3
, pp. 312-320
-
-
Zhang, C.1
Lu, X.2
Zhang, X.3
-
20
-
-
0000120766
-
Estimating the dimension of a model
-
Schwarz G. Estimating the dimension of a model. The Annals of Statistics 1978, 6:461-464.
-
(1978)
The Annals of Statistics
, vol.6
, pp. 461-464
-
-
Schwarz, G.1
-
21
-
-
0028482006
-
Learning Bayesian belief networks (an approach based on the MDL principle)
-
Lam W, Bacchus F. Learning Bayesian belief networks (an approach based on the MDL principle). Computational Intelligence 1994, 10:1-31.
-
(1994)
Computational Intelligence
, vol.10
, pp. 1-31
-
-
Lam, W.1
Bacchus, F.2
-
22
-
-
32544457732
-
Global and gene-specific analyses show distinct roles of Myod and Myog at a common set of promoters
-
10.1038/sj.emboj.7600958, 1383539, 16437161
-
Cao Y, Kumar RM, Penn BH, Berkes CA, Kooperberg C, Boyer LA, Young RA, Tapscott SJ. Global and gene-specific analyses show distinct roles of Myod and Myog at a common set of promoters. The EMBO Journal 2006, 25:502-511. 10.1038/sj.emboj.7600958, 1383539, 16437161.
-
(2006)
The EMBO Journal
, vol.25
, pp. 502-511
-
-
Cao, Y.1
Kumar, R.M.2
Penn, B.H.3
Berkes, C.A.4
Kooperberg, C.5
Boyer, L.A.6
Young, R.A.7
Tapscott, S.J.8
-
23
-
-
2342627231
-
Deacetylase inhibitors increase muscle cell size by promoting Myoblast recruitment and fusion through induction of Follistatin
-
10.1016/S1534-5807(04)00107-8, 15130492
-
Iezzi S, Di Padova M, Serra C, Caretti G, Simone C, Maklan E, Minetti G, Zhao P, Hoffman EP, Puri PL, Sartorelli V. Deacetylase inhibitors increase muscle cell size by promoting Myoblast recruitment and fusion through induction of Follistatin. Developmental Cell 2004, 6:673-684. 10.1016/S1534-5807(04)00107-8, 15130492.
-
(2004)
Developmental Cell
, vol.6
, pp. 673-684
-
-
Iezzi, S.1
Di Padova, M.2
Serra, C.3
Caretti, G.4
Simone, C.5
Maklan, E.6
Minetti, G.7
Zhao, P.8
Hoffman, E.P.9
Puri, P.L.10
Sartorelli, V.11
-
24
-
-
1442265681
-
Expression profiling and identification of novel genes involved in myogenic differentiation
-
Tomczak KK, Marinescu VD, Ramoni MF, Sanoudou D, Montanaro F, Han M, Kunkel LM, Kohane IS, Beggs AH. Expression profiling and identification of novel genes involved in myogenic differentiation. The FASEB Journal 2004, 18:403-405.
-
(2004)
The FASEB Journal
, vol.18
, pp. 403-405
-
-
Tomczak, K.K.1
Marinescu, V.D.2
Ramoni, M.F.3
Sanoudou, D.4
Montanaro, F.5
Han, M.6
Kunkel, L.M.7
Kohane, I.S.8
Beggs, A.H.9
-
25
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
10.1093/biostatistics/4.2.249, 12925520
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4:249-264. 10.1093/biostatistics/4.2.249, 12925520.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
27
-
-
47349105353
-
Anni 2.0: a multipurpose text-mining tool for the life sciences
-
10.1186/gb-2008-9-6-r96, 2481428, 18549479
-
Jelier R, Schuemie MJ, Veldhoven A, Dorssers LC, Jenster G, Kors JA. Anni 2.0: a multipurpose text-mining tool for the life sciences. Genome Biology 2008, 9:R96. 10.1186/gb-2008-9-6-r96, 2481428, 18549479.
-
(2008)
Genome Biology
, vol.9
-
-
Jelier, R.1
Schuemie, M.J.2
Veldhoven, A.3
Dorssers, L.C.4
Jenster, G.5
Kors, J.A.6
-
28
-
-
62549091023
-
Benchmarking regulatory network reconstruction with GRENDEL
-
10.1093/bioinformatics/btp068, 19188190
-
Haynes BC, Brent MR. Benchmarking regulatory network reconstruction with GRENDEL. Bioinformatics 2009, 25:801-807. 10.1093/bioinformatics/btp068, 19188190.
-
(2009)
Bioinformatics
, vol.25
, pp. 801-807
-
-
Haynes, B.C.1
Brent, M.R.2
-
29
-
-
13544269611
-
An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
-
10.1093/nar/gkh1009, 545451, 15604458
-
Ma H, Kumar B, Ditges U, Gunzer F, Buer J, Zeng A. An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs. Nucleic Acids Res 2004, 32:6643-6649. 10.1093/nar/gkh1009, 545451, 15604458.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 6643-6649
-
-
Ma, H.1
Kumar, B.2
Ditges, U.3
Gunzer, F.4
Buer, J.5
Zeng, A.6
-
30
-
-
33847162014
-
A methodology for global validation of microarray experiments
-
10.1186/1471-2105-7-333, 1539027, 16822306
-
Miron M, Woody OZ, Marcil A, Murie C, Sladek R, Nadon R. A methodology for global validation of microarray experiments. BMC Bioinformatics 2006, 7:333. 10.1186/1471-2105-7-333, 1539027, 16822306.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 333
-
-
Miron, M.1
Woody, O.Z.2
Marcil, A.3
Murie, C.4
Sladek, R.5
Nadon, R.6
-
31
-
-
0036682376
-
Meta-Analysis of Microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer
-
Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM. Meta-Analysis of Microarrays: Interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Research 2002, 62:4427-4433.
-
(2002)
Cancer Research
, vol.62
, pp. 4427-4433
-
-
Rhodes, D.R.1
Barrette, T.R.2
Rubin, M.A.3
Ghosh, D.4
Chinnaiyan, A.M.5
-
32
-
-
60849090744
-
A statistical framework for integrating two microarray data sets in differential expression analysis
-
10.1186/1471-2105-10-S1-S23, 2648727, 19208123
-
Lai Y, Eckenrode SE, She J. A statistical framework for integrating two microarray data sets in differential expression analysis. BMC Bioinformatics 2009, 10:S23. 10.1186/1471-2105-10-S1-S23, 2648727, 19208123.
-
(2009)
BMC Bioinformatics
, vol.10
-
-
Lai, Y.1
Eckenrode, S.E.2
She, J.3
-
33
-
-
0034126611
-
Regression and model-building in conservation biology, biogeography and ecology: the distinction between - and reconciliation of - 'predictive' and 'explanatory' models
-
Mac Nally R. Regression and model-building in conservation biology, biogeography and ecology: the distinction between - and reconciliation of - 'predictive' and 'explanatory' models. Biodiversity and Conservation 2000, 9:655-671.
-
(2000)
Biodiversity and Conservation
, vol.9
, pp. 655-671
-
-
Mac Nally, R.1
-
34
-
-
84950945692
-
Model selection and accounting for model uncertainty in graphical models using Occam's window
-
Madigan D, Raftery AE. Model selection and accounting for model uncertainty in graphical models using Occam's window. Journal of the American Statistical Association 1994, 89:1535-1546.
-
(1994)
Journal of the American Statistical Association
, vol.89
, pp. 1535-1546
-
-
Madigan, D.1
Raftery, A.E.2
-
35
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
10.1038/ng881, 11967538
-
Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nature Genetics 2002, 31:64-68. 10.1038/ng881, 11967538.
-
(2002)
Nature Genetics
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
36
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cereviciae
-
10.1126/science.1075090, 12399584
-
Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA. Transcriptional regulatory networks in Saccharomyces cereviciae. Science 2002, 298:799-804. 10.1126/science.1075090, 12399584.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
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