-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
10.1126/science.270.5235.467 7569999
-
Schena M Shalon D Davis RW Brown PO Quantitative monitoring of gene expression patterns with a complementary DNA microarray Science 1995, 270:467-470. 10.1126/science.270.5235.467 7569999
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
2
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonuleotide arrays
-
10.1038/nbt1296-1675 9634850
-
Lockhart D Dong H Byrne M Follettie M Gallo M Chee M Mittmann M Wang C Kobayashi M Horton H Brown E Expression monitoring by hybridization to high-density oligonuleotide arrays Nature Biotechnology 1996, 14:1675-1680. 10.1038/nbt1296-1675 9634850
-
(1996)
Nature Biotechnology
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.1
Dong, H.2
Byrne, M.3
Follettie, M.4
Gallo, M.5
Chee, M.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.11
-
3
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
25624 9843569
-
Spellman PT Sherlock G Zhang MQ Iyer VR Anders K Eisen MB Brown PO Botstein D Futcher B Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization Molecular Biology of the Cell 1998, 9:3273-3297. 25624 9843569
-
(1998)
Molecular Biology of the Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
4
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
10.1126/science.286.5439.531 10521349
-
Golub TR Slonim DK Tamayo P Huard C Gaasenbeek M Mesirov JP Coller H Loh ML Downing JR Caligiuri MA Bloomfield CD Lander ES Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring Science 1999, 286:531-537. 10.1126/ science.286.5439.531 10521349
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
5
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
10.1016/S1535-6108(02)00030-2 12086878
-
Singh D Febbo PG Ross K Jackson DG Manola J Ladd C Tamayo P Renshaw AA D'Amico AV Richie JP Lander ES Loda M Kantoff PW Golub TR Sellers WR Gene expression correlates of clinical prostate cancer behavior Cancer Cell 2002, 1:203-209. 10.1016/S1535-6108(02)00030-2 12086878
-
(2002)
Cancer Cell
, vol.1
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
Lander, E.S.11
Loda, M.12
Kantoff, P.W.13
Golub, T.R.14
Sellers, W.R.15
-
6
-
-
0043268708
-
Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice
-
10.2337/diabetes.52.8.2151 12882935
-
Wilson KHS Eckenrode SE Li QZ Ruan QG Yang P Shi JD Davoodi-Semiromi A Mclndoe RA Croker BP She JX Microarray analysis of gene expression in the kidneys of new- and post-onset diabetic NOD mice Diabetes 2003, 52:2151-2159. 10.2337/diabetes.52.8.2151 12882935
-
(2003)
Diabetes
, vol.52
, pp. 2151-2159
-
-
Wilson, K.H.S.1
Eckenrode, S.E.2
Li, Q.Z.3
Ruan, Q.G.4
Yang, P.5
Shi, J.D.6
Davoodi-Semiromi, A.7
Mclndoe, R.A.8
Croker, B.P.9
She, J.X.10
-
7
-
-
0842331569
-
Gene expression profiles define a key checkpoint for type 1 diabetes in NOD mice
-
10.2337/diabetes.53.2.366 14747287
-
Eckenrode SE Ruan Q Yang P Zheng W Mclndoe RA She JX Gene expression profiles define a key checkpoint for type 1 diabetes in NOD mice Diabetes 2004, 53:366-375. 10.2337/diabetes.53.2.366 14747287
-
(2004)
Diabetes
, vol.53
, pp. 366-375
-
-
Eckenrode, S.E.1
Ruan, Q.2
Yang, P.3
Zheng, W.4
Mclndoe, R.A.5
She, J.X.6
-
8
-
-
0038054341
-
PGC-1α-response genes involved in oxidative phos-phorylation are coordinately downregulated in human diabetes
-
10.1038/ng1180 12808457
-
Mootha VK Lindgren CM Eriksson KF Subramanian A Sihag S Lehar J Puigserver P Carlsson E Ridderstrale M Laurila E Houstis N Daly MJ Patterson N Mesirov JP Golub TR Tamayo P Spiegelman B Lander ES Hirschhorn JN Altshuler D Groop L PGC-1α-response genes involved in oxidative phos-phorylation are coordinately downregulated in human diabetes Nature Genetics 2003, 34:267-273. 10.1038/ng1180 12808457
-
(2003)
Nature Genetics
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstrale, M.9
Laurila, E.10
Houstis, N.11
Daly, M.J.12
Patterson, N.13
Mesirov, J.P.14
Golub, T.R.15
Tamayo, P.16
Spiegelman, B.17
Lander, E.S.18
Hirschhorn, J.N.19
Altshuler, D.20
Groop, L.21
more..
-
9
-
-
4944232237
-
Combining multiple microarray studies and modeling interstudy variation
-
10.1093/bioinformatics/btg1010
-
Choi JK Yu U Kim S Yoo OJ Combining multiple microarray studies and modeling interstudy variation Bioinformatics 2003, 19(Supplement 1):i84-90. 10.1093/bioinformatics/btg1010
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Choi, J.K.1
Yu, U.2
Kim, S.3
Yoo, O.J.4
-
10
-
-
27544492493
-
Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data
-
10.1093/bioinformatics/bti647 16131522
-
Xu L Tan AC Naiman DQ Geman D Winslow RL Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data Bioinformatics 2005, 21:3905-3911. 10.1093/bioinformatics/bti647 16131522
-
(2005)
Bioinformatics
, vol.21
, pp. 3905-3911
-
-
Xu, L.1
Tan, A.C.2
Naiman, D.Q.3
Geman, D.4
Winslow, R.L.5
-
11
-
-
33747017793
-
Bayesian models for pooling microarray studies with multiple sources of replications
-
1534062 16677390 10.1186/1471-2105-7-247
-
Conlon EM Song JJ Liu JS Bayesian models for pooling microarray studies with multiple sources of replications BMC Bioinformatics 2006, 7:247. 1534062 16677390 10.1186/1471-2105-7-247
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 247
-
-
Conlon, E.M.1
Song, J.J.2
Liu, J.S.3
-
12
-
-
38849106351
-
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments
-
10.1093/bioinformatics/btm620 18204063
-
Hong F R RB A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments Bioinformatics 2008, 24:374-382. 10.1093/bioinformatics/btm620 18204063
-
(2008)
Bioinformatics
, vol.24
, pp. 374-382
-
-
Hong, F.R.R.B.1
-
13
-
-
41749099668
-
Merging microarray data from separate breast cancer studies provides a robust prognostic test
-
2409450 18304324 10.1186/1471-2105-9-125
-
Xu L Tan AC Winslow RL Geman D Merging microarray data from separate breast cancer studies provides a robust prognostic test BMC Bioinformatics 2008, 9:125. 2409450 18304324 10.1186/1471-2105-9-125
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 125
-
-
Xu, L.1
Tan, A.C.2
Winslow, R.L.3
Geman, D.4
-
14
-
-
50649121884
-
MAID: An effect size based model for microarray data integration across laboratories and platforms
-
2483727 18616827 10.1186/1471-2105-9-305
-
Borozan I Chen L Paeper B Heathcote JE Edwards AM Katze M Zhang Z McGilvray ID MAID: An effect size based model for microarray data integration across laboratories and platforms BMC Bioinformatics 2008, 9:305. 2483727 18616827 10.1186/1471-2105-9-305
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 305
-
-
Borozan, I.1
Chen, L.2
Paeper, B.3
Heathcote, J.E.4
Edwards, A.M.5
Katze, M.6
Zhang, Z.7
McGilvray, I.D.8
-
15
-
-
26444563353
-
List of lists-annotated (LOLA): A database for annotation and comparison of published microarray gene lists
-
10.1016/j.gene.2005.07.008 16140476
-
Cahan P Ahmad AM Burke H Fu S Lai Y Florea L Dharker N Kobrinski T Kale P McCaffrey TA List of lists-annotated (LOLA): A database for annotation and comparison of published microarray gene lists Gene 2005, 360:78-82. 10.1016/j.gene.2005.07.008 16140476
-
(2005)
Gene
, vol.360
, pp. 78-82
-
-
Cahan, P.1
Ahmad, A.M.2
Burke, H.3
Fu, S.4
Lai, Y.5
Florea, L.6
Dharker, N.7
Kobrinski, T.8
Kale, P.9
McCaffrey, T.A.10
-
16
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
10.1073/pnas.0601231103
-
Ein-Dor L Zuk O Domany E Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer Proceedings of the National Academy of Sciences USA 2006, 103:5923-5928. 10.1073/ pnas.0601231103
-
(2006)
Proceedings of the National Academy of Sciences USA
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
17
-
-
33847162014
-
A methodology for global validation of microarray experiments
-
1539027 16822306 10.1186/1471-2105-7-333
-
Miron M Woody OZ Marcil A Murie C Sladek R Nadon R A methodology for global validation of microarray experiments BMC Bioinformatics 2006, 7:333. 1539027 16822306 10.1186/1471-2105-7-333
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 333
-
-
Miron, M.1
Woody, O.Z.2
Marcil, A.3
Murie, C.4
Sladek, R.5
Nadon, R.6
-
18
-
-
34447345702
-
A mixture model approach to the tests of concordance and discordance between two large scale experiments with two-sample groups
-
10.1093/bioinformatics/btm103 17384018
-
Lai Y Adam BL Podolsky R She JX A mixture model approach to the tests of concordance and discordance between two large scale experiments with two-sample groups Bioinformatics 2007, 23:1243-1250. 10.1093/ bioinformatics/btm103 17384018
-
(2007)
Bioinformatics
, vol.23
, pp. 1243-1250
-
-
Lai, Y.1
Adam, B.L.2
Podolsky, R.3
She, J.X.4
-
19
-
-
51749123784
-
Apparently low reproducibility of true differential expression discoveries in microarray studies
-
Zhang M Yao C Guo Z Zou J Zhang L Xiao H Wang D Yang D Gong X Zhu J Li Y Li X Apparently low reproducibility of true differential expression discoveries in microarray studies Bioinformatics 2008.
-
(2008)
Bioinformatics
-
-
Zhang, M.1
Yao, C.2
Guo, Z.3
Zou, J.4
Zhang, L.5
Xiao, H.6
Wang, D.7
Yang, D.8
Gong, X.9
Zhu, J.10
Li, Y.11
Li, X.12
-
20
-
-
24144445705
-
Improved statistical tests for differential gene expression by shrinking variance components estimates
-
10.1093/biostatistics/kxh018 15618528
-
Cui X Hwang JTG Qiu J Blades NJ Churchill GA Improved statistical tests for differential gene expression by shrinking variance components estimates Biostatistics 2005, 6:59-75. 10.1093/biostatistics/kxh018 15618528
-
(2005)
Biostatistics
, vol.6
, pp. 59-75
-
-
Cui, X.1
Hwang, J.T.G.2
Qiu, J.3
Blades, N.J.4
Churchill, G.A.5
-
21
-
-
0043203327
-
Multiple hypothesis testing in microarray experiments
-
10.1214/ss/1056397487
-
Dudoit S Shaffer JP Boldrick JC Multiple hypothesis testing in microarray experiments Statistical Science 2003, 18:71-103. 10.1214/ss/ 1056397487
-
(2003)
Statistical Science
, vol.18
, pp. 71-103
-
-
Dudoit, S.1
Shaffer, J.P.2
Boldrick, J.C.3
-
22
-
-
33745606461
-
A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays
-
10.1093/bioinformatics/btl148 16632494
-
McLachlan GJ Bean RW Jones LB A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays Bioinformatics 2006, 22:1608-1615. 10.1093/bioinformatics/ btl148 16632494
-
(2006)
Bioinformatics
, vol.22
, pp. 1608-1615
-
-
McLachlan, G.J.1
Bean, R.W.2
Jones, L.B.3
-
24
-
-
0023570352
-
On bootstrapping the likelihood ratio test statistic for the number of components in a normal mixture
-
10.2307/2347790
-
McLachlan GJ On bootstrapping the likelihood ratio test statistic for the number of components in a normal mixture Applied Statistics 1987, 36:318-324. 10.2307/2347790
-
(1987)
Applied Statistics
, vol.36
, pp. 318-324
-
-
McLachlan, G.J.1
-
25
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y Hochberg Y Controlling the false discovery rate: A practical and powerful approach to multiple testing Journal of the Royal Statistical Society, Series B 1995, 57:289-300.
-
(1995)
Journal of the Royal Statistical Society, Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
27
-
-
84874647831
-
-
Web link for R-code http://home.gwu.edu/~ylai/research/Concordance
-
Web Link for R-code
-
-
|