Hydrophobic carboxy-terminal residues dramatically reduce protein levels in the haloarchaeon Haloferax volcanii

Microbiology

Volumn 156, Issue 1, 2010, Pages 248-255

  Reuter, Christopher J ^a   Uthandi, Sivakumar ^a   Puentes, Jose A ^a   Maupin Furlow, Julie A ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; CYSTEINE; GREEN FLUORESCENT PROTEIN; ISOLEUCINE; LEUCINE; METHIONINE; PHENYLALANINE; TYROSINE; VALINE;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL LEVEL; CONTROLLED STUDY; HALOFERAX VOLCANII; HYDROPHOBICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEIN PROCESSING;

AMINO ACID SEQUENCE; AMINO ACIDS; ARCHAEAL PROTEINS; GREEN FLUORESCENT PROTEINS; HALOFERAX VOLCANII; PROTEIN CONFORMATION; PROTEIN PROCESSING, POST-TRANSLATIONAL; RNA, ARCHAEAL;

ARCHAEA; EUKARYOTA; HALOBACTERIA; HALOFERAX VOLCANII;

EID: 76849117352     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.032995-0     Document Type: Article

References (39)

1. Bohley, P. (1996). Surface hydrophobicity and intracellular degradation of proteins. Biol Chem 377, 425-435.
2. Brenneis, M., Hering, O., Lange, C. & Soppa, J. (2007). Experimental characterization of cis-acting elements important for translation and transcription in halophilic archaea. PLoS Genet 3, e229.
3. Chalfie, M. (1995). Green fluorescent protein. Photochem Photobiol 62, 651-656.
4. Ciechanover, A. (1998). The ubiquitin-proteasome pathway: on protein death and cell life. EMBO J 17, 7151-7160.
5. Cline, S. W., Pfeifer, F. & Doolittle, W. F. (1995). Transformation of halophilic archaea. In Archaea: a Laboratory Manual, pp. 197-204. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
6. Devoy, A., Soane, T., Welchman, R. & Mayer, R. J. (2005). The ubiquitin-proteasome system and cancer. Essays Biochem 41, 187-203.
7. Egorova, K. & Antranikian, G. (2005). Industrial relevance of thermophilic Archaea. Curr Opin Microbiol 8, 649-655.
8. Eisenberg, D., Weiss, R. M. & Terwilliger, T. C. (1984). The hydrophobic moment detects periodicity in protein hydrophobicity. Proc Natl Acad Sci U S A 81, 140-144.
9. Flynn, J. M., Levchenko, I., Seidel, M., Wickner, S. H., Sauer, R. T. & Baker, T. A. (2001). Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis. Proc Natl Acad Sci U S A 98, 10584-10589.
10. Gerega, A., Rockel, B., Peters, J., Tamura, T., Baumeister, W. & Zwickl, P. (2005). VAT, the Thermoplasma homolog of mammalian p97/VCP, is an N domain regulated protein unfoldase. J Biol Chem 280, 42856-42862.
11. Gottesman, S. (2003). Proteolysis in bacterial regulatory circuits. Annu Rev Cell Dev Biol 19, 565-587.
12. Gottesman, S., Roche, E., Zhou, Y. & Sauer, R. T. (1998). The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev 12, 1338-1347.
13. Grune, T., Merker, K., Sandig, G. & Davies, K. J. (2003). Selective degradation of oxidatively modified protein substrates by the proteasome. Biochem Biophys Res Commun 305, 709-718.
14. Humbard, M. A., Zhou, G. & Maupin-Furlow, J. A. (2009). The N-terminal penultimate residue of 20S proteasome a1 influences its Nα-acetylation and protein levels as well as growth rate and stress responses of Haloferax volcanii. J Bacteriol 191, 3794-3803.
15. Jenal, U. & Shapiro, L. (1996). Cell cycle-controlled proteolysis of a flagellar motor protein that is asymmetrically distributed in the Caulobacter predivisional cell. EMBO J 15, 2393-2406.
16. Kaczowka, S. J. & Maupin-Furlow, J. A. (2003). Subunit topology of two 20S proteasomes from Haloferax volcanii. J Bacteriol 185, 165-174.
17. Kaczowka, S. J., Reuter, C. J., Talarico, L. A. & Maupin-Furlow, J. A. (2005). Recombinant production of Zymomonas mobilis pyruvate decarboxylase in a recombinant haloarchaeon, Haloferax volcanii. Archaea 1, 327-334.
18. Keiler, K. C., Shapiro, L. & Williams, K. P. (2000). tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: a two-piece tmRNA functions in Caulobacter. Proc Natl Acad Sci U S A 97, 7778-7783.
19. Lupas, A. N. & Martin, J. (2002). AAA proteins. Curr Opin Struct Biol 12, 746-753.
20. Margesin, R. & Schinner, F. (2001). Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5, 73-83.
21. Mevarech, M., Frolow, F. & Gloss, L. M. (2000). Halophilic enzymes: proteins with a grain of salt. Biophys Chem 86, 155-164.
22. Navon, A. & Goldberg, A. L. (2001). Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome. Mol Cell 8, 1339-1349.
23. + superfamily ATPases: common structure-diverse function. Genes Cells 6, 575-597.
24. Ormö, M., Cubitt, A. B., Kallio, K., Gross, L. A., Tsien, R. Y. & Remington, S. J. (1996). Crystal structure of the Aequorea victoria green fluorescent protein. Science 273, 1392-1395.
25. Reuter, C. J. & Maupin-Furlow, J. A. (2004). Analysis of proteasome-dependent proteolysis in Haloferax volcanii cells using short-lived green fluorescent proteins. Appl Environ Microbiol 70, 7530-7538.
26. Reuter, C. J., Kaczowka, S. J. & Maupin-Furlow, J. A. (2004). Differential regulation of the PanA and PanB proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii. J Bacteriol 186, 7763-7772.
27. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74, 5463-5467.
28. Schiraldi, C. & De Rosa, M. (2002). The production of biocatalysts and biomolecules from extremophiles. Trends Biotechnol 20, 515-521.
29. Sherwood, K. E., Cano, D. J. & Maupin-Furlow, J. A. (2009). Glycerol-mediated repression of glucose metabolism and glycerol kinase as the sole route of glycerol catabolism in the haloarchaeon Haloferax volcanii. J Bacteriol 191, 4307-4315.
30. Smith, D. M., Kafri, G., Cheng, Y., Ng, D., Walz, T. & Goldberg, A. L. (2005). ATP binding to PAN or the 26S ATPases causes association with the 20S proteasome, gate opening, and translocation of unfolded proteins. Mol Cell 20, 687-698.
31. Soppa, J. (2006). From genomes to function: haloarchaea as model organisms. Microbiology 152, 585-590.
32. Varshavsky, A., Turner, G., Du, F. & Xie, Y. (2000). The ubiquitin system and the N-end rule pathway. Biol Chem 381, 779-789.
33. Wilson, H. L., Ou, M. S., Aldrich, H. C. & Maupin-Furlow, J. A. (2000). Biochemical and physical properties of the Methanococcus jannaschii 20S proteasome and PAN, a homolog of the ATPase (Rpt) subunits of the eucaryal 26S proteasome. J Bacteriol 182, 1680-1692.
34. Withey, J. H. & Friedman, D. I. (2003). A salvage pathway for protein synthesis: tmRNA and trans-translation. Annu Rev Microbiol 57, 101-123.
35. Wolf, D. H. & Hilt, W. (2004). The proteasome: a proteolytic nanomachine of cell regulation and waste disposal. Biochim Biophys Acta 1695, 19-31.
36. Yang, F., Moss, L. G. & Phillips, G. N., Jr (1996). The molecular structure of green fluorescent protein. Nat Biotechnol 14, 1246-1251.
37. Zhang, G., Gurtu, V. & Kain, S. R. (1996). An enhanced green fluorescent protein allows sensitive detection of gene transfer in mammalian cells. Biochem Biophys Res Commun 227, 707-711.
38. Zhou, G. Y., Kowalczyk, D., Humbard, M. A., Rohatgi, S. & Maupin-Furlow, J. A. (2008). Proteasomal components required for cell growth and stress responses in the haloarchaeon Haloferax volcanii. J Bacteriol 190, 8096-8105.
39. Zwickl, P., Ng, D., Woo, K. M., Klenk, H.-P. & Goldberg, A. L. (1999). An archaebacterial ATPase, homologous to ATPases in the eukaryotic 26S proteasome, activates protein breakdown by 20S proteasomes. J Biol Chem 274, 26008-26014.