Recombinant production of Zymomonas mobilis pyruvate decarboxylase in the haloarchaeon Haloferax volcanii

Archaea

Volumn 1, Issue 5, 2005, Pages 327-334

  Kaczowka, Steven J ^a   Reuter, Christopher J ^a   Talarico, Lee A ^a   Maupin Furlow, Julie A ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

Biotechnology; Ethanol; Halophile; Metabolism; Molecular biology; Recombinant protein

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HALOFERAX VOLCANII; NEGIBACTERIA; ZYMOMONAS MOBILIS;

ALCOHOL; ARCHAEAL RNA; BACTERIAL DNA; PYRUVATE DECARBOXYLASE; RECOMBINANT PROTEIN;

ARTICLE; BIOSYNTHESIS; BIOTECHNOLOGY; CHEMISTRY; CIRCULAR DICHROISM; ENZYMOLOGY; ESCHERICHIA COLI; GENETIC TRANSFORMATION; GENETICS; HALOFERAX VOLCANII; METABOLISM; METHODOLOGY; MOLECULAR CLONING; MOLECULAR WEIGHT; POLYACRYLAMIDE GEL ELECTROPHORESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; WESTERN BLOTTING; ZYMOMONAS;

BIOTECHNOLOGY; BLOTTING, WESTERN; CIRCULAR DICHROISM; CLONING, MOLECULAR; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; ETHANOL; HALOFERAX VOLCANII; MOLECULAR WEIGHT; PYRUVATE DECARBOXYLASE; RECOMBINANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, ARCHAEAL; TRANSFORMATION, GENETIC; ZYMOMONAS;

EID: 20144379336     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2005/325738     Document Type: Article

References (55)

1. Aviv, M., H. Giladi, A.B. Oppenheim and G. Glaser. 1996. Analysis of the shut-off of ribosomal RNA promoters in Escherichia coli upon entering the stationary phase of growth. FEMS Microbiol. Lett. 140:71-76.
2. Beall, D., K. Ohta and L. Ingram. 1991. Parametric studies of ethanol-production from xylose and other sugars by recombinant Escherichia coli. Biotechnol. Bioeng. 38:296-303.
3. Bertrand, J.C., M. Almallah, M. Acquaviva and G. Mille. 1990. Biodegradation of hydrocarbons by an extremely halophilic archaebacterium. Lett. Appl. Microbiol. 11:260-263.
4. Blaseio, U. and F. Pfeifer. 1990. Transformation of Halobacterium halobium: development of vectors and investigation of gas vesicle synthesis. Proc. Natl. Acad. Sci. USA 87:6772-6776.
5. Blochl, E., R. Rachel, S. Burggraf, D. Hafenbradl, H.W. Jannasch and K.O. Stetter. 1997. Pyrolobus fumarii, gen. and sp. Nov., represents a novel group of archaea, extending the upper temperature limit for life to 113°C. Extremophiles 1:14-21.
6. Bradford, M.M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
7. Candy, J.M. and R.G. Duggleby. 1998. Structure and properties of pyruvate decarboxylase and site-directed mutagenesis of the Zymomonas mobilis enzyme. Biochim. Biophys. Acta 1385:323-338.
8. Candy, J.M., J. Koga, P.F. Nixon and R.G. Duggleby. 1996. The role of residues glutamate-50 and phenylalanine-496 in Zymomonas mobilis pyruvate decarboxylase. Biochem. J. 315:745-751.
9. Causey, T.B., S. Zhou, K.T. Shanmugam and L.O. Ingram. 2003. Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homo-acetate production. Proc. Natl. Acad. Sci. USA 100:825-832.
10. Chen, Y.H., J.T. Yang and K.H. Chau. 1974. Determination of the helix and beta form of proteins in aqueous solution by circular dichroism. Biochemistry 13:3350-3359.
11. Cline, S.W., W.L. Lam, R.L. Charlebois, L.C. Schalkwyk and W.F. Doolittle. 1989. Transformation methods for halophilic archaebacteria. Can. J. Microbiol. 35:148-152.
12. Conway, T., Y.A. Osman, J.I. Konnan, E.M. Hoffmann and L.O. Ingram. 1987. Promoter and nucleotide sequences of the Zymomonas mobilis pyruvate decarboxylase. J. Bacteriol. 169:949-954.
13. Deleage, G. and C. Geourjon. 1993. An interactive graphic program for calculating the secondary structure content of proteins from circular dichroism spectrum. Comput. Appl. Biosci. 9:197-199.
14. Dobritzsch, D., S. König, G. Schneider and G. Lu. 1998. High resolution crystal structure of pyruvate decarboxylase from Zymomonas mobilis. Implications for substrate activation in pyruvate decarboxylases. J. Biol. Chem. 273:20,196-20,204.
15. Emerson, D., S. Chauhan, P. Oriel and J.A. Breznak. 1994. Haloferax sp. D1227, a halophilic archaeon capable of growth on aromatic compounds. Arch. Microbiol. 161:445-452.
16. Hennessey, Jr., J.P. and W.C. Johnson, Jr. 1982. Experimental errors and their effect on analyzing circular dichroism spectra of proteins. Anal. Biochem. 125:177-188.
17. Herbert, R.A. 1992. A perspective on the biotechnological potential of extremophiles. Trends Biotechnol. 10:395-402.
18. Hezayen, F.F., B.H. Rehm, R. Eberhardt and A. Steinbuchel. 2000. Polymer production by two newly isolated extremely halophilic archaea: application of a novel corrosion-resistant bioreactor. Appl. Microbiol. Biotechnol. 54:319-325.
19. Holmes, M., F. Pfeifer and M. Dyall-Smith. 1994. Improved shuttle vectors for Haloferax volcanii including a dual-resistance plasmid. Gene 146:117-121.
20. Hoppner, T. C. and H.W. Doelle. 1983. Purification and kinetic characteristics of pyruvate decarboxylase and ethanol dehydrogenase from Zymomonas mobilis in relation to ethanol production. Eur. J. Appl. Microbiol. Biotechnol. 17:152-157.
21. Iding, H., P. Siegert, K. Mesch and M. Pohl. 1998. Application of α-keto acid decarboxylases in biotransformations. Biochim. Biophys. Acta 1385:307-322.
22. Ingram, L.O., H.C. Aldrich, A.C. Borges et al. 1999. Enteric bacterial catalysts for fuel ethanol production. Biotechnol. Prog. 15:855-866.
23. Javor, B.J. 2002. Industrial microbiology of solar salt production. J. Ind. Microbiol. Biotechnol. 28:42-47.
24. Jez, J.M., M.J. Bennett, B.P. Schlegel, M. Lewis and T.M. Penning. 1997. Comparative anatomy of the aldo-keto reductase superfamily. Biochem J. 326:625-636.
25. Jolley, K.A., R.J. Russell, D.W. Hough and M.J. Danson. 1997. Site-directed mutagenesis and halophilicity of dihydrolipoamide dehydrogenase from the halophilic archaeon, Haloferax volcanii. Eur. J. Biochem. 248:362-368.
26. Kashefi, K., D.R. Lovley. 2003. Extending the upper temperature limit for life. Science 301:934.
27. Keradjopoulos, D. and A.W. Holldorf. 1977. Thermophilic character of enzymes from extreme halophilic bacteria. FEMS Microbiol. Lett. 1:179.
28. MacDonald, T., G. Yowell and M. McCormack. 2001. US ethanol industry; production capacity outlook. California Energy Commission Staff Report. P600-01-017.
29. Margesin, R. and F. Schinner. 2001a. Biodegradation and bioremediation of hydrocarbons in extreme environments. Appl. Microbiol. Biotechnol. 56:650-663.
30. Margesin, R. and F. Schinner. 2001b. Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5:73-83.
31. Martin, E.L., R.L. Reinhardt, L.L. Baum, M.R. Becker, J.J. Shaffer and T.A. Kokjohn. 2000. The effects of ultraviolet radiation on the moderate halophile Halomonas elongata and the extreme halophile Halobacterium salinarum. Can. J. Microbiol. 46:180-187.
32. Neale, A.D., R.K. Scopes, J.M. Kelly and R.E. Wettenhall. 1986. The two alcohol dehydrogenases of Zymomonas mobilis. Purification by differential dye ligand chromatography, molecular characterisation and physiological roles. Eur. J. Biochem. 154:119-124.
33. Neale, A.D., R.K. Scopes, R.E. Wettenhall and N.J. Hoogenraad. 1987. Pyruvate decarboxylase of Zymomonas mobilis: isolation, properties, and genetic expression in Escherichia coli. J. Bacteriol. 169:1024-1028.
34. Ng, W.V., S.P. Kennedy, G.G. Mahairas et al. 2000. Genome sequence of Halobacterium species NRC-1. Proc. Natl. Acad. Sci. USA 97:12,176-12,181.
35. Ohta, K., D.S. Beall, J.P. Mejia, K.T. Shanmugam and L.O. Ingram. 1991. Genetic improvement of Escherichia coli for ethanol production: chromosomal integration of Zymomonas mobilis genes encoding pyruvate decarboxylase and alcohol dehydrogenase II. Appl. Environ. Microbiol. 57:893-900.
36. Oren, A. and P. Gurevich. 1994a. Distribution of glycerol dehydrogenase and glycerol kinase activity in halophilic archaea. FEMS Microbiol. Lett. 118:311-316.
37. Oren, A. and P. Gurevich. 1994b. Production of D-lactate, acetate, and pyruvate from glycerol in communities of halophilic archaea in the Dead Sea and in saltern crystallizer ponds. FEMS Microbiol. Ecol. 14:147-156.
38. Radianingtyas, H. and P.C. Wright. 2003. Alcohol dehydrogenases from thermophilic and hyperthermophilic archaea and bacteria. FEMS Microbiol. Rev. 27:593-616.
39. Raj, K.C., L.A. Talarico, L.O. Ingram and J.A. Maupin-Furlow. 2002. Cloning and characterization of the Zymobacter palmae pyruvate decarboxylase (pdc): comparison to bacterial homologues. Appl. Environ. Microbiol. 68:2869-2876.
40. Rawal, N., S.M. Kelkar and W. Altekar. 1988. Alternative routes of carbohydrate metabolism in halophilic archaebacteria. Ind. J. Biochem. Biophys. 25:674-686.
41. Reuter, C.J., S.J. Kaczowka and J.A. Maupin-Furlow. 2004. Differential regulation of the PanA and Pan B proteasome-activating nucleotidase and 20S proteasomal proteins of the haloarchaeon Haloferax volcanii. J. Bacteriol. 186:7763-7772.
42. Rosado, M. and D.J. Gage. 2003. Transcriptional control of a rRNA promoter of the nodulating symbiont Sinorhizobium meliloti. FEMS Microbiol. Lett. 226:15-22.
43. Scherer, P.A., G.R. Vollmer, T. Fakhouri and S. Martensen. 2000. Development of a methanogenic process to degrade exhaustively the organic fraction of municipal "grey waste" under thermophilic and hyperthermophilic conditions. Water Sci. Technol. 41:83-91.
44. Schiraldi, C., M. Giuliano and M. De Rosa. 2003. Perspectives on biotechnological applications of archaea. Archaea 1:75-86.
45. Schleper, C., G. Puehler, I. Holz, A. Gambacorta, D. Janekovic, U. Santarius, H.P. Klenk and W. Zillig. 1995. Picrophilus gen. Nov., fam. Nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0. J. Bacteriol. 177:7050-7059.
46. Sreerama, N. and R. W. Woody. 1993. A self-consistent method for the analysis of protein secondary structure from circular dichroism. Anal. Biochem. 209:32-44.
47. Talarico, L.A., L.O. Ingram and J.A. Maupin-Furlow. 2001. Production of the Gram-positive Sarcina ventriculi pyruvate decarboxylase in Escherichia coli. Microbiology 147:2425-2435.
48. +-electrochemical potential gradient and inhibitors for the mammalian glucose transporter inhibit the transport. Biochim. Biophys. Acta 1070:293-299.
49. Thongthai, C., T.J. Mcgenity, P. Suntinanalert and W.D. Grant. 1992. Isolation and characterization of an extremely halophilic archaeobacterium from traditionally fermented Thai fish sauce (nam pla). Lett. Appl. Microbiol. 14:111-114.
50. Tomlinson, G.A. and T.K. Koch. 1974. The metabolism of carbohydrates by extremely halophilic bacteria: glucose metabolism via a modified Entner-Doudoroff pathway. Can. J. Microbiol. 20:1085-1091.
51. van de Vossenberg, J.L., A.J. Driessen, W. Zillig and W.N. Konings. 1998. Bioenergetics and cytoplasmic membrane stability of the extremely acidophilic, thermophilic archaeon Picrophilus oshimae. Extremophiles 2:67-74.
52. Ventosa, A., J.J. Nieto and A. Oren. 1998. Biology of moderately halophilic aerobic bacteria. Microbiol. Mol. Biol. Rev. 62:504-544.
53. Wallace, B.A. 2000. Synchrotron radiation circular-dichroism spectroscopy as a tool for investigating protein structures. J. Synchrotron Rad. 7:289-295.
54. Wendoloski, D., C. Ferrer and M.L. Dyall-Smith. 2001. A new simvastatin (mevinolin)-resistance marker from Haloarcula hispanica and a new Haloferax volcanii strain cured of plasmid pHV2. Microbiology 147:959-964.
55. Wyman, C.E. 2001. Twenty years of trials, tribulations, and research progress in bioethanol technology - selected key events along the way. Appl. Biochem. Biotechnol. 91:5-21.