-
1
-
-
0031443372
-
Evidence for a functional role of the dynamics of glycine-121 of Escherichia coli dihydrofolate reductase obtained from kinetic analysis of a site-directed mutant
-
Cameron C.E., and Benkovic S.J. Evidence for a functional role of the dynamics of glycine-121 of Escherichia coli dihydrofolate reductase obtained from kinetic analysis of a site-directed mutant. Biochemistry 36 (1997) 15792-15800
-
(1997)
Biochemistry
, vol.36
, pp. 15792-15800
-
-
Cameron, C.E.1
Benkovic, S.J.2
-
2
-
-
0027998347
-
Point mutations at glycine-121 of Escherichia coli dihydrofolate reductase: important roles of a flexible loop in the stability and function
-
Gekko K., Kunori Y., Takeuchi H., Ichihara S., and Kodama M. Point mutations at glycine-121 of Escherichia coli dihydrofolate reductase: important roles of a flexible loop in the stability and function. J. Biochem. (Tokyo) 116 (1994) 34-41
-
(1994)
J. Biochem. (Tokyo)
, vol.116
, pp. 34-41
-
-
Gekko, K.1
Kunori, Y.2
Takeuchi, H.3
Ichihara, S.4
Kodama, M.5
-
3
-
-
0027411746
-
Effects of point mutation in a flexible loop on the stability and enzymatic function of Escherichia coli dihydrofolate reductase
-
Gekko K., Yamagami K., Kunori Y., Ichihara S., Kodama M., and Iwakura M. Effects of point mutation in a flexible loop on the stability and enzymatic function of Escherichia coli dihydrofolate reductase. J. Biochem. (Tokyo) 113 (1993) 74-80
-
(1993)
J. Biochem. (Tokyo)
, vol.113
, pp. 74-80
-
-
Gekko, K.1
Yamagami, K.2
Kunori, Y.3
Ichihara, S.4
Kodama, M.5
Iwakura, M.6
-
4
-
-
0025184401
-
A second-site mutation at phenylalanine-137 that increases catalytic efficiency in the mutant aspartate-27-serine Escherichia coli dihydrofolate reductase
-
Howell E.E., Booth C., Farnum M., Kraut J., and Warren M.S. A second-site mutation at phenylalanine-137 that increases catalytic efficiency in the mutant aspartate-27-serine Escherichia coli dihydrofolate reductase. Biochemistry 29 (1990) 8561-8569
-
(1990)
Biochemistry
, vol.29
, pp. 8561-8569
-
-
Howell, E.E.1
Booth, C.2
Farnum, M.3
Kraut, J.4
Warren, M.S.5
-
5
-
-
0002902139
-
Preorganization and protein dynamics in enzyme catalysis
-
Rajagopalan P.T.R., and Benkovic S.J. Preorganization and protein dynamics in enzyme catalysis. Chem. Rec. 2 (2002) 24-36
-
(2002)
Chem. Rec.
, vol.2
, pp. 24-36
-
-
Rajagopalan, P.T.R.1
Benkovic, S.J.2
-
6
-
-
0037159205
-
Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: mutational effects on hydride transfer rates
-
Rajagopalan P.T.R., Lutz S., and Benkovic S.J. Coupling interactions of distal residues enhance dihydrofolate reductase catalysis: mutational effects on hydride transfer rates. Biochemistry 41 (2002) 12618-12628
-
(2002)
Biochemistry
, vol.41
, pp. 12618-12628
-
-
Rajagopalan, P.T.R.1
Lutz, S.2
Benkovic, S.J.3
-
7
-
-
0033955055
-
Protein dynamics in enzymatic catalysis: exploration of dihydrofolate reductase
-
Radkiewicz J.L., and Brooks C.L. Protein dynamics in enzymatic catalysis: exploration of dihydrofolate reductase. J. Am. Chem. Soc. 122 (2000) 225-231
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 225-231
-
-
Radkiewicz, J.L.1
Brooks, C.L.2
-
8
-
-
0023668190
-
Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli
-
Fierke C.A., Johnson K.A., and Benkovic S.J. Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli. Biochemistry 26 (1987) 4085-4092
-
(1987)
Biochemistry
, vol.26
, pp. 4085-4092
-
-
Fierke, C.A.1
Johnson, K.A.2
Benkovic, S.J.3
-
9
-
-
0035969953
-
Interloop contacts modulate ligand cycling during catalysis by Escherichia coli dihydrofolate reductase
-
Miller G.P., Wahnon D.C., and Benkovic S.J. Interloop contacts modulate ligand cycling during catalysis by Escherichia coli dihydrofolate reductase. Biochemistry 40 (2001) 867-875
-
(2001)
Biochemistry
, vol.40
, pp. 867-875
-
-
Miller, G.P.1
Wahnon, D.C.2
Benkovic, S.J.3
-
10
-
-
0031015737
-
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence
-
Sawaya M.R., and Kraut J. Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence. Biochemistry 36 (1997) 586-603
-
(1997)
Biochemistry
, vol.36
, pp. 586-603
-
-
Sawaya, M.R.1
Kraut, J.2
-
11
-
-
0032485865
-
Strength of an interloop hydrogen bond determines the kinetic pathway in catalysis by Escherichia coli dihydrofolate reductase
-
Miller G.P., and Benkovic S.J. Strength of an interloop hydrogen bond determines the kinetic pathway in catalysis by Escherichia coli dihydrofolate reductase. Biochemistry 37 (1998) 6336-6342
-
(1998)
Biochemistry
, vol.37
, pp. 6336-6342
-
-
Miller, G.P.1
Benkovic, S.J.2
-
12
-
-
0031808658
-
Stretching exercises-flexibility in dihydrofolate reductase catalysis
-
Miller G.P., and Benkovic S.J. Stretching exercises-flexibility in dihydrofolate reductase catalysis. Chem. Biol. 5 (1998) R105-R113
-
(1998)
Chem. Biol.
, vol.5
-
-
Miller, G.P.1
Benkovic, S.J.2
-
13
-
-
0029102089
-
Dynamics of the dihydrofolate reductase-folate complex: catalytic sites and regions known to undergo conformational change exhibit diverse dynamical features
-
Epstein D.M., Benkovic S.J., and Wright P.E. Dynamics of the dihydrofolate reductase-folate complex: catalytic sites and regions known to undergo conformational change exhibit diverse dynamical features. Biochemistry 34 (1995) 11037-11048
-
(1995)
Biochemistry
, vol.34
, pp. 11037-11048
-
-
Epstein, D.M.1
Benkovic, S.J.2
Wright, P.E.3
-
14
-
-
0032485627
-
Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase
-
Miller G.P., and Benkovic S.J. Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase. Biochemistry 37 (1998) 6327-6335
-
(1998)
Biochemistry
, vol.37
, pp. 6327-6335
-
-
Miller, G.P.1
Benkovic, S.J.2
-
15
-
-
0031937819
-
Nonadditive effects of double mutations at the flexible loops, glycine-67 and glycine-121, of Escherichia coli dihydrofolate reductase on its stability and function
-
Ohmae E., Iriyama K., Ichihara S., and Gekko K. Nonadditive effects of double mutations at the flexible loops, glycine-67 and glycine-121, of Escherichia coli dihydrofolate reductase on its stability and function. J. Biochem. (Tokyo) 123 (1998) 33-41
-
(1998)
J. Biochem. (Tokyo)
, vol.123
, pp. 33-41
-
-
Ohmae, E.1
Iriyama, K.2
Ichihara, S.3
Gekko, K.4
-
16
-
-
0034848452
-
Effects of five-tryptophan mutations on structure, stability and function of Escherichia coli dihydrofolate reductase
-
Ohmae E., Sasaki Y., and Gekko K. Effects of five-tryptophan mutations on structure, stability and function of Escherichia coli dihydrofolate reductase. J. Biochem. (Tokyo) 130 (2001) 439-447
-
(2001)
J. Biochem. (Tokyo)
, vol.130
, pp. 439-447
-
-
Ohmae, E.1
Sasaki, Y.2
Gekko, K.3
-
17
-
-
21044447962
-
Effects of mutation at methionine-42 of Escherichia coli dihydrofolate reductase on stability and function: implication of hydrophobic interactions
-
Ohmae E., Fukumizu Y., Iwakura M., and Gekko K. Effects of mutation at methionine-42 of Escherichia coli dihydrofolate reductase on stability and function: implication of hydrophobic interactions. J. Biochem. (Tokyo) 137 (2005) 643-652
-
(2005)
J. Biochem. (Tokyo)
, vol.137
, pp. 643-652
-
-
Ohmae, E.1
Fukumizu, Y.2
Iwakura, M.3
Gekko, K.4
-
18
-
-
0029939820
-
Effects of point mutations at the flexible loop glycine-67 of Escherichia coli; dihydrofolate reductase on its stability and function
-
Ohmae E., Iriyama K., Ichihara S., and Gekko K. Effects of point mutations at the flexible loop glycine-67 of Escherichia coli; dihydrofolate reductase on its stability and function. J. Biochem. (Tokyo) 119 (1996) 703-710
-
(1996)
J. Biochem. (Tokyo)
, vol.119
, pp. 703-710
-
-
Ohmae, E.1
Iriyama, K.2
Ichihara, S.3
Gekko, K.4
-
19
-
-
0031981532
-
Effects of point mutations at the flexible loop alanine-145 of Escherichia coli dihydrofolate reductase on its stability and function
-
Ohmae E., Ishimura K., Iwakura M., and Gekko K. Effects of point mutations at the flexible loop alanine-145 of Escherichia coli dihydrofolate reductase on its stability and function. J. Biochem. (Tokyo) 123 (1998) 839-846
-
(1998)
J. Biochem. (Tokyo)
, vol.123
, pp. 839-846
-
-
Ohmae, E.1
Ishimura, K.2
Iwakura, M.3
Gekko, K.4
-
20
-
-
67849095470
-
Functionally important conformations of the Met20 loop in dihydrofolate reductase are populated by rapid thermal fluctuations
-
Arora K., and Brooks III C.L. Functionally important conformations of the Met20 loop in dihydrofolate reductase are populated by rapid thermal fluctuations. J. Am. Chem. Soc. 131 (2009) 5642-5647
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 5642-5647
-
-
Arora, K.1
Brooks III, C.L.2
-
21
-
-
0038810233
-
Correlated motion and the effect of distal mutations in dihydrofolate reductase
-
Rod T.H., Radkiewicz J.L., and Brooks C.L. Correlated motion and the effect of distal mutations in dihydrofolate reductase. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 6980-6985
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 6980-6985
-
-
Rod, T.H.1
Radkiewicz, J.L.2
Brooks, C.L.3
-
22
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace C.N. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol. 131 (1986) 266-280
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
23
-
-
0029173864
-
Protein folding kinetics
-
Shirley B.A. (Ed), Humana Press Inc., Totowa, NJ
-
Kiefhaber T. Protein folding kinetics. In: Shirley B.A. (Ed). Protein Stability and Folding: Theory and Practice, Vol. 40, Methods in Molecular Biology (1995), Humana Press Inc., Totowa, NJ 313-341
-
(1995)
Protein Stability and Folding: Theory and Practice, Vol. 40, Methods in Molecular Biology
, pp. 313-341
-
-
Kiefhaber, T.1
-
24
-
-
0018759051
-
Methotrexate, a high-affinity pseudosubstrate of dihydrofolate reductase
-
Williams J.W., Morrison J.F., and Duggleby R.G. Methotrexate, a high-affinity pseudosubstrate of dihydrofolate reductase. Biochemistry 18 (1979) 2567-2573
-
(1979)
Biochemistry
, vol.18
, pp. 2567-2573
-
-
Williams, J.W.1
Morrison, J.F.2
Duggleby, R.G.3
-
25
-
-
0021872251
-
Substrate-induced hysteresis in the activity of Escherichia coli dihydrofolate reductase
-
Penner M.H., and Frieden C. Substrate-induced hysteresis in the activity of Escherichia coli dihydrofolate reductase. J. Biol. Chem. 260 (1985) 5366-5369
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 5366-5369
-
-
Penner, M.H.1
Frieden, C.2
-
26
-
-
0020466628
-
Kinetic mechanism of the reaction catalyzed by dihydrofolate reductase from Escherichia coli
-
Stone S.R., and Morrison J.F. Kinetic mechanism of the reaction catalyzed by dihydrofolate reductase from Escherichia coli. Biochemistry 21 (1982) 3757-3765
-
(1982)
Biochemistry
, vol.21
, pp. 3757-3765
-
-
Stone, S.R.1
Morrison, J.F.2
-
27
-
-
0021107943
-
Site-directed mutagenesis as a probe of enzyme structure and catalysis: tyrosyl-tRNA synthetase cysteine-35 to glycine-35 mutation
-
Wilkinson A.J., Fersht A.R., Blow D.M., and Winter G. Site-directed mutagenesis as a probe of enzyme structure and catalysis: tyrosyl-tRNA synthetase cysteine-35 to glycine-35 mutation. Biochemistry 22 (1983) 3581-3586
-
(1983)
Biochemistry
, vol.22
, pp. 3581-3586
-
-
Wilkinson, A.J.1
Fersht, A.R.2
Blow, D.M.3
Winter, G.4
-
29
-
-
0037022683
-
Network of coupled promoting motions in enzyme catalysis
-
Agarwal P.K., Billeter S.R., Rajagopalan P.T.R., Benkovic S.J., and Hammes-Schiffer S. Network of coupled promoting motions in enzyme catalysis. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 2794-2799
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 2794-2799
-
-
Agarwal, P.K.1
Billeter, S.R.2
Rajagopalan, P.T.R.3
Benkovic, S.J.4
Hammes-Schiffer, S.5
-
30
-
-
0024512066
-
Hydrophobic interactions via mutants of Escherichia coli dihydrofolate reductase: separation of binding and catalysis
-
Murphy D.J., and Benkovic S.J. Hydrophobic interactions via mutants of Escherichia coli dihydrofolate reductase: separation of binding and catalysis. Biochemistry 28 (1989) 3025-3031
-
(1989)
Biochemistry
, vol.28
, pp. 3025-3031
-
-
Murphy, D.J.1
Benkovic, S.J.2
-
31
-
-
0028828696
-
Molecular basis for nonadditive mutational effects in Escherichia coli dihydrofolate reductase
-
Wagner C.R., Huang Z., Singleton S.F., and Benkovic S.J. Molecular basis for nonadditive mutational effects in Escherichia coli dihydrofolate reductase. Biochemistry 34 (1995) 15671-15680
-
(1995)
Biochemistry
, vol.34
, pp. 15671-15680
-
-
Wagner, C.R.1
Huang, Z.2
Singleton, S.F.3
Benkovic, S.J.4
-
32
-
-
0025082684
-
Additivity of mutational effects in proteins
-
Wells J.A. Additivity of mutational effects in proteins. Biochemistry 29 (1990) 8509-8517
-
(1990)
Biochemistry
, vol.29
, pp. 8509-8517
-
-
Wells, J.A.1
-
33
-
-
0026244229
-
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structues
-
Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structues. J. Appl. Crystallogr. 24 (1991) 946-950
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
|