MiCroKit 3.0: An integrated database of midbody, centrosome and kinetochore

Nucleic Acids Research

Volumn 38, Issue SUPPL.1, 2009, Pages

  Ren, Jian ^a   Liu, Zexian ^a   Gao, Xinjiao ^a   Jin, Changjiang ^a   Ye, Mingliang ^b   Zou, Hanfa ^b   Wen, Longping ^a,c   Zhang, Zhaolei ^d   Xue, Yu ^a,c   Yao, Xuebiao ^a  

^a UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

^b DALIAN INSTITUTE OF CHEMICAL PHYSICS   (China)

^c HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^d UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; CHROMOSOME PROTEIN; SURVIVIN;

ARTICLE; CAENORHABDITIS ELEGANS; CELLULAR DISTRIBUTION; CENTROMERE; CENTROSOME; DROSOPHILA MELANOGASTER; FLUORESCENCE MICROSCOPE; HUMAN; INFORMATION PROCESSING; INTERNET; MICROKIT 3.0; NONHUMAN; NUCLEOTIDE SEQUENCE; ONLINE SYSTEM; ORTHOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN LOCALIZATION; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES POMBE; XENOPUS LAEVIS; ALGORITHM; ANIMAL; BIOLOGY; CHEMISTRY; COMPUTER INTERFACE; COMPUTER PROGRAM; FLUORESCENCE MICROSCOPY; FUNGAL GENOME; GENETIC DATABASE; INFORMATION RETRIEVAL; METHODOLOGY; MITOSIS SPINDLE;

CAENORHABDITIS ELEGANS; DROSOPHILA MELANOGASTER; HOMO SAPIENS; MUS MUSCULUS; SACCHAROMYCES CEREVISIAE; XENOPUS LAEVIS;

ALGORITHMS; ANIMALS; CENTROSOME; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DATABASES, PROTEIN; GENOME, FUNGAL; HUMANS; INFORMATION STORAGE AND RETRIEVAL; INTERNET; KINETOCHORES; MICROSCOPY, FLUORESCENCE; MITOTIC SPINDLE APPARATUS; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 75549084840     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp784     Document Type: Article

References (35)

1. Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K. and Walter, P. (2007) Molecular Biology of the Cell, 5th edn. Garland Science/Taylor, New York.
2. Ganem, N.J., Godinho, S.A. and Pellman, D. (2009) A mechanism linking extra centrosomes to chromosomal instability. Nature., 460, 278-282.
3. Yang, Z., Loncarek, J., Khodjakov, A. and Rieder, C.L. (2008) Extra centrosomes and/or chromosomes prolong mitosis in human cells. Nat. Cell Biol., 10, 748-751.
4. Pelletier, L. (2008) Centrosomes: keeping tumors in check. Curr. Biol., 18, R702-R704.
5. Basto, R., Brunk, K., Vinadogrova, T., Peel, N., Franz, A., Khodjakov, A. and Raff, J.W. (2008) Centrosome amplification can initiate tumorigenesis in flies. Cell, 133, 1032-1042.
6. Jaspersen, S.L. and Winey, M. (2004) The budding yeast spindle pole body: structure, duplication, and function. Annu. Rev. Cell Dev. Biol., 20, 1-28.
7. Andersen, J.S., Wilkinson, C.J., Mayor, T., Mortensen, P., Nigg, E.A. and Mann, M. (2003) Proteomic characterization of the human centrosome by protein correlation profiling. Nature, 426, 570-574.
8. Doxsey, S., McCollum, D. and Theurkauf, W. (2005) Centrosomes in cellular regulation. Annu. Rev. Cell Dev. Biol., 21, 411-434.
9. Badano, J.L., Teslovich, T.M. and Katsanis, N. (2005) The centrosome in human genetic disease. Nat. Rev. Genet., 6, 194-205.
10. Wan, X., O'Quinn, R.P., Pierce, H.L., Joglekar, A.P., Gall, W.E., DeLuca, J.G., Carroll, C.W., Liu, S.T., Yen, T.J., McEwen, B.F. et al. (2009) Protein architecture of the human kinetochore microtubule attachment site. Cell, 137, 672-684.
11. Sakuno, T., Tada, K. and Watanabe, Y. (2009) Kinetochore geometry defined by cohesion within the centromere. Nature, 458, 852-858.
12. Yang, Y., Wu, F., Ward, T., Yan, F., Wu, Q., Wang, Z., McGlothen, T., Peng, W., You, T., Sun, M. et al. (2008) Phosphorylation of HsMis13 by Aurora B kinase is essential for assembly of functional kinetochore. J. Biol. Chem., 283, 26726-26736.
13. Tanaka, T.U. and Desai, A. (2008) Kinetochore-microtubule interactions: the means to the end. Curr. Opin. Cell Biol., 20, 53-63.
14. Cheeseman, I.M. and Desai, A. (2008) Molecular architecture of the kinetochore-microtubule interface. Nat. Rev. Mol. Cell Biol., 9, 33-46.
15. Westermann, S., Drubin, D.G. and Barnes, G. (2007) Structures and functions of yeast kinetochore complexes. Annu. Rev. Biochem., 76, 563-591.
16. Bakhoum, S.F., Thompson, S.L., Manning, A.L. and Compton, D.A. (2009) Genome stability is ensured by temporal control of kinetochore-microtubule dynamics. Nat. Cell Biol., 11, 27-35.
17. Fukagawa, T. (2004) Assembly of kinetochores in vertebrate cells. Exp. Cell Res., 296, 21-27.
18. Pohl, C. and Jentsch, S. (2009) Midbody ring disposal by autophagy is a post-abscission event of cytokinesis. Nat. Cell Biol., 11, 65-70.
19. Pohl, C. and Jentsch, S. (2008) Final stages of cytokinesis and midbody ring formation are controlled by BRUCE. Cell, 132, 832-845.
20. Lee, H.H., Elia, N., Ghirlando, R., Lippincott-Schwartz, J. and Hurley, J.H. (2008) Midbody targeting of the ESCRT machinery by a noncanonical coiled coil in CEP55. Science, 322, 576-580.
21. Otegui, M.S., Verbrugghe, K.J. and Skop, A.R. (2005) Midbodies and phragmoplasts: analogous structures involved in cytokinesis. Trends Cell Biol., 15, 404-413.
22. Skop, A.R., Liu, H., Yates, J. 3rd, Meyer, B.J. and Heald, R. (2004) Dissection of the mammalian midbody proteome reveals conserved cytokinesis mechanisms. Science, 305, 61-66.
23. Guertin, D.A., Trautmann, S. and McCollum, D. (2002) Cytokinesis in eukaryotes. Microbiol. Mol. Biol. Rev., 66, 155-178.
24. Remm, M., Storm, C.E. and Sonnhammer, E.L. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
25. O'Brien, K.P., Remm, M. and Sonnhammer, E.L. (2005) Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res., 33, D476-D480.
26. Tatusov, R.L., Koonin, E.V. and Lipman, D.J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
27. Yu, H.G., Hiatt, E.N. and Dawe, R.K. (2000) The plant kinetochore. Trends Plant Sci., 5, 543-547.
28. The universal protein resource (UniProt). (2009) Nucleic Acids Res., 37, D169-D174.
29. Bjellqvist, B., Basse, B., Olsen, E. and Celis, J.E. (1994) Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions. Electrophoresis, 15, 529-539.
30. Bjellqvist, B., Hughes, G.J., Pasquali, C., Paquet, N., Ravier, F., Sanchez, J.C., Frutiger, S. and Hochstrasser, D. (1993) The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis, 14, 1023-1031.
31. Johnson, M., Zaretskaya, I., Raytselis, Y., Merezhuk, Y., McGinnis, S. and Madden, T.L. (2008) NCBI BLAST: a better web interface. Nucleic Acids Res., 36, W5-W9.
32. Nogales-Cadenas, R., Abascal, F., Diez-Perez, J., Carazo, J.M. and Pascual-Montano, A. (2009) CentrosomeDB: a human centrosomal proteins database. Nucleic Acids Res., 37, D175-D180.
33. Kuo, P.C., Liu, H.F. and Chao, J.I. (2004) Survivin and p53 modulate quercetin-induced cell growth inhibition and apoptosis in human lung carcinoma cells. J. Biol. Chem., 279, 55875-55885.
34. Li, F., Ackermann, E.J., Bennett, C.F., Rothermel, A.L., Plescia, J., Tognin, S., Villa, A., Marchisio, P.C. and Altieri, D.C. (1999) Pleiotropic cell-division defects and apoptosis induced by interference with survivin function. Nat. Cell Biol., 1, 461-466.
35. Yang, D., Welm, A. and Bishop, J.M. (2004) Cell division and cell survival in the absence of survivin. Proc. Natl Acad. Sci. USA, 101, 15100-15105.