메뉴 건너뛰기




Volumn 5, Issue 2, 2010, Pages 123-134

When analoging is not enough: Scaffold discovery in medicinal chemistry

Author keywords

Fragment based drug design; Scaffold discovery; Scaffold hopping; Structure based drug design

Indexed keywords

4 [4 [2 (4 CHLOROPHENYL) 5,5 DIMETHYL 1 CYCLOHEXEN 1 YLMETHYL] 1 PIPERAZINYL] N [4 [3 MORPHOLINO 1 (PHENYLTHIOMETHYL)PROPYLAMINO] 3 (TRIFLUOROMETHYLSULFONYL)BENZENESULFONYL]BENZAMIDE; ACYL COENZYME A DESATURASE 1 INHIBITOR; BETA LACTAM ANTIBIOTIC; CARBAPENEM; CEPHALOSPORIN; CLOZAPINE; ENZYME INHIBITOR; EPOTHILONE B; HYDROCODONE; HYDROXYMETHYLGLUTARYL COENZYME A REDUCTASE INHIBITOR; INDEGLITAZAR; IXABEPILONE; LANSOPRAZOLE; LIGAND; MACROPHAGE ELASTASE INHIBITOR; NICOTINAMIDE; OMEPRAZOLE; PANTOPRAZOLE; PENICILLIN G; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR AGONIST; PHENETHYLAMINE; PHENTERMINE; PHOSPHATASE; PHOSPHODIESTERASE V INHIBITOR; PROTEIN INHIBITOR; RABEPRAZOLE; SILDENAFIL; STEROID; UNCLASSIFIED DRUG; VARDENAFIL;

EID: 75449116535     PISSN: 17460441     EISSN: None     Source Type: Journal    
DOI: 10.1517/17460440903584874     Document Type: Review
Times cited : (19)

References (57)
  • 1
    • 34247109045 scopus 로고    scopus 로고
    • Natural products as sources of new drugs over the last 25 years
    • Newman DJ, Cragg GM. Natural products as sources of new drugs over the last 25 years. J Nat Prod 2007;70:461-477
    • (2007) J Nat Prod , vol.70 , pp. 461-477
    • Newman, D.J.1    Cragg, G.M.2
  • 3
    • 33750701141 scopus 로고    scopus 로고
    • On scaffolds and hopping in medicinal chemistry
    • Brown N, Jacoby E. On scaffolds and hopping in medicinal chemistry. Mini Rev Med Chem 2006;6:1217-1229
    • (2006) Mini Rev Med Chem , vol.6 , pp. 1217-1229
    • Brown, N.1    Jacoby, E.2
  • 5
    • 33847381100 scopus 로고    scopus 로고
    • A decade of fragment-based drug design: Strategic advances and lessons learned
    • Hajduk PJ, Greer J. A decade of fragment-based drug design: strategic advances and lessons learned. Nat Rev Drug Discov 2007;6:211-219
    • (2007) Nat Rev Drug Discov , vol.6 , pp. 211-219
    • Hajduk, P.J.1    Greer, J.2
  • 6
    • 46849089254 scopus 로고    scopus 로고
    • Recent developments in fragment-based drug discovery
    • Congreve M, Chessari G, Tisi D, et al. Recent developments in fragment-based drug discovery. J Med Chem 2008;51:3661-3680
    • (2008) J Med Chem , vol.51 , pp. 3661-3680
    • Congreve, M.1    Chessari, G.2    Tisi, D.3
  • 7
    • 41649105837 scopus 로고    scopus 로고
    • Kinase-likeness and kinase-privileged fragments: Toward virtual polypharmacology
    • Aronov AM, McClain B, Moody CS, et al. Kinase-likeness and kinase-privileged fragments: toward virtual polypharmacology. J Med Chem 2008;51:1214-1222
    • (2008) J Med Chem , vol.51 , pp. 1214-1222
    • Aronov, A.M.1    McClain, B.2    Moody, C.S.3
  • 8
    • 65249169368 scopus 로고    scopus 로고
    • Substructure mining of GPCR ligands reveals activity-class specific functional groups in an unbiased manner
    • van der Horst E, Okuno Y, Bender A, et al. Substructure mining of GPCR ligands reveals activity-class specific functional groups in an unbiased manner. J Chem Inf Model 2009;9:348-360
    • (2009) J Chem Inf Model , vol.9 , pp. 348-360
    • Van Der Horst, E.1    Okuno, Y.2    Bender, A.3
  • 9
    • 33846694819 scopus 로고    scopus 로고
    • Scaffold selection and scaffold hopping in lead generation: A medicinal chemistry perspective
    • Zhao H. Scaffold selection and scaffold hopping in lead generation: a medicinal chemistry perspective. Drug Discov Today 2007;12:149-155
    • (2007) Drug Discov Today , vol.12 , pp. 149-155
    • Zhao, H.1
  • 10
    • 0035438391 scopus 로고    scopus 로고
    • Is there a difference between leads and drugs? A historical perspective
    • Oprea TI, Davis AM, Teague SJ, et al. Is there a difference between leads and drugs? A historical perspective. J Chem Info Comput Sci 2001;41:1308-1315
    • (2001) J Chem Info Comput Sci , vol.41 , pp. 1308-1315
    • Oprea, T.I.1    Davis, A.M.2    Teague, S.J.3
  • 11
    • 0037124196 scopus 로고    scopus 로고
    • Drugs, leads, and drug-likeness: An analysis of some recently launched drugs
    • Proudfoot JR. Drugs, leads, and drug-likeness: an analysis of some recently launched drugs. Bioorg Med Chem Lett 2002;12:1647-1650
    • (2002) Bioorg Med Chem Lett , vol.12 , pp. 1647-1650
    • Proudfoot, J.R.1
  • 12
    • 33947300207 scopus 로고
    • Macro rings. XXXVII. Multiple electrophilic substitution reactions of [2.2] paracyclophanes and interconversions of polysubstituted derivatives
    • Reich HJ, Cram DJ. Macro rings. XXXVII. Multiple electrophilic substitution reactions of [2.2] paracyclophanes and interconversions of polysubstituted derivatives. J Am Chem Soc 1969;91:3527-3533
    • (1969) J Am Chem Soc , vol.91 , pp. 3527-3533
    • Reich, H.J.1    Cram, D.J.2
  • 13
    • 33745126636 scopus 로고    scopus 로고
    • Dependence of molecular properties on proteomic family for marketed oral drugs
    • Vieth M, Sutherland JJ. Dependence of molecular properties on proteomic family for marketed oral drugs. J Med Chem 2006;49:3451-3453
    • (2006) J Med Chem , vol.49 , pp. 3451-3453
    • Vieth, M.1    Sutherland, J.J.2
  • 14
    • 6444234760 scopus 로고    scopus 로고
    • The role of the medicinal chemist in drug discovery-then and now
    • Lombardino JG, Lowe JA. The role of the medicinal chemist in drug discovery-then and now. Nat Rev Drug Discov 2004;3:853-862
    • (2004) Nat Rev Drug Discov , vol.3 , pp. 853-862
    • Lombardino, J.G.1    Lowe, J.A.2
  • 15
    • 33645675960 scopus 로고    scopus 로고
    • Estimating the cost of new drug development: Is it really $802 million?
    • Adams C, Brantner VV. Estimating the cost of new drug development: is it really $802 million? Health Aff 2006;2:420-428
    • (2006) Health Aff , vol.2 , pp. 420-428
    • Adams, C.1    Brantner, V.V.2
  • 16
    • 67651004682 scopus 로고    scopus 로고
    • Fragment-based drug discovery
    • Warr WA. Fragment-based drug discovery. J Comput Aided Mol Des 2009;23:453-458
    • (2009) J Comput Aided Mol des , vol.23 , pp. 453-458
    • Warr, W.A.1
  • 17
    • 61649109015 scopus 로고    scopus 로고
    • The influence of lead discovery strategies on the properties of drug candidates
    • Keserü GM, Makara GM. The influence of lead discovery strategies on the properties of drug candidates. Nat Rev Drug Discov 2009;8:203-212
    • (2009) Nat Rev Drug Discov , vol.8 , pp. 203-212
    • Keserü, G.M.1    Makara, G.M.2
  • 18
    • 16244388286 scopus 로고    scopus 로고
    • Virtual exploration of the small-molecule chemical universe below 160 Daltons
    • Fink T, Bruggesser H, Reymond JL. Virtual exploration of the small-molecule chemical universe below 160 Daltons. Angew Chem Int Ed Engl 2005;44:1504-1508
    • (2005) Angew Chem Int Ed Engl , vol.44 , pp. 1504-1508
    • Fink, T.1    Bruggesser, H.2    Reymond, J.L.3
  • 20
    • 72949114937 scopus 로고    scopus 로고
    • Advances in fragment-based drug discovery platforms
    • Orita M, Warizaya M, Amano Y, et al. Advances in fragment-based drug discovery platforms. Exp Opin Drug Discov 2009;4:1125-1144
    • (2009) Exp Opin Drug Discov , vol.4 , pp. 1125-1144
    • Orita, M.1    Warizaya, M.2    Amano, Y.3
  • 21
    • 33751076241 scopus 로고    scopus 로고
    • Deconstructing fragment-based inhibitor discovery
    • Babaoglu K, Shoichet BK. Deconstructing fragment-based inhibitor discovery. Nat Chem Biol 2006;2:720-723
    • (2006) Nat Chem Biol , vol.2 , pp. 720-723
    • Babaoglu, K.1    Shoichet, B.K.2
  • 22
    • 3142781225 scopus 로고    scopus 로고
    • Small-molecule inhibitors of protein-protein interactions: Progressing towards the dream
    • Arkin MR, Wells JA. Small-molecule inhibitors of protein-protein interactions: progressing towards the dream. Nat Rev Drug Discov 2004;3:301-317
    • (2004) Nat Rev Drug Discov , vol.3 , pp. 301-317
    • Arkin, M.R.1    Wells, J.A.2
  • 23
    • 58849145512 scopus 로고    scopus 로고
    • Predicting druggable binding sites at the protein-protein interface
    • Fuller JC, Burgoyne NJ, Jackson RM. Predicting druggable binding sites at the protein-protein interface. Drug Discov Today 2009;14:155-161
    • (2009) Drug Discov Today , vol.14 , pp. 155-161
    • Fuller, J.C.1    Burgoyne, N.J.2    Jackson, R.M.3
  • 24
    • 20444486559 scopus 로고    scopus 로고
    • An inhibitor of Bcl family proteins induces regression of solid tumours
    • Oltersdorf T, Elmore SW, Shoemaker AR, et al. An inhibitor of Bcl family proteins induces regression of solid tumours. Nature 2005;435:677-681
    • (2005) Nature , vol.435 , pp. 677-681
    • Oltersdorf, T.1    Elmore, S.W.2    Shoemaker, A.R.3
  • 25
    • 52649083344 scopus 로고    scopus 로고
    • Discovery of ABT-263, a Bcl-family protein inhibitor: Observations on targeting a large protein-protein interaction
    • Wendt MD. Discovery of ABT-263, a Bcl-family protein inhibitor: observations on targeting a large protein-protein interaction. Exp Opin Drug Discov 2008;3:1123-1143
    • (2008) Exp Opin Drug Discov , vol.3 , pp. 1123-1143
    • Wendt, M.D.1
  • 26
    • 1442335327 scopus 로고    scopus 로고
    • Shooting at survivors: Bcl-2 family members as drug targets for cancer
    • Juin P, Geneste O, Raimbaud E, et al. Shooting at survivors: Bcl-2 family members as drug targets for cancer. Biochim Biophys Acta 2004;1644:251-260
    • (2004) Biochim Biophys Acta , vol.1644 , pp. 251-260
    • Juin, P.1    Geneste, O.2    Raimbaud, E.3
  • 27
    • 31544467109 scopus 로고    scopus 로고
    • Discovery of a potent inhibitor of the antiapoptotic protein Bcl-xL from NMR and parallel synthesis
    • Petros AM, Dinges J, Augeri DA, et al. Discovery of a potent inhibitor of the antiapoptotic protein Bcl-xL from NMR and parallel synthesis. J Med Chem 2006;49:656-663
    • (2006) J Med Chem , vol.49 , pp. 656-663
    • Petros, A.M.1    Dinges, J.2    Augeri, D.A.3
  • 29
    • 33846574259 scopus 로고    scopus 로고
    • Fragments, network biology and designing multiple ligands
    • Morphy R, Rankovic Z. Fragments, network biology and designing multiple ligands. Drug Discov Today 2007;12:156-160
    • (2007) Drug Discov Today , vol.12 , pp. 156-160
    • Morphy, R.1    Rankovic, Z.2
  • 30
    • 4644271084 scopus 로고    scopus 로고
    • Magic shotguns versus magic bullets: Selectively non-selective drugs for mood disorders and schizophrenia
    • Roth BL, Sheffler DJ, Kroeze WK. Magic shotguns versus magic bullets: selectively non-selective drugs for mood disorders and schizophrenia. Nat Rev Drug Discov 2004;3:353-359
    • (2004) Nat Rev Drug Discov , vol.3 , pp. 353-359
    • Roth, B.L.1    Sheffler, D.J.2    Kroeze, W.K.3
  • 31
    • 33746862160 scopus 로고    scopus 로고
    • The physicochemical challenges of designing multiple ligands
    • Morphy R, Rankovic Z. The physicochemical challenges of designing multiple ligands. J Med Chem 2006;49:4961-4970
    • (2006) J Med Chem , vol.49 , pp. 4961-4970
    • Morphy, R.1    Rankovic, Z.2
  • 32
    • 20844437061 scopus 로고    scopus 로고
    • A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design
    • Card GL, Blasdel L, England BP, et al. A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design. Nat Biotechnol 2005;23:201-207
    • (2005) Nat Biotechnol , vol.23 , pp. 201-207
    • Card, G.L.1    Blasdel, L.2    England, B.P.3
  • 33
    • 58549087807 scopus 로고    scopus 로고
    • Scaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent
    • Artis DA, Lin JJ, Zhang C, et al. Scaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent. Proc Natl Acad Sci USA 2009;106:262-267
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 262-267
    • Artis, D.A.1    Lin, J.J.2    Zhang, C.3
  • 34
    • 0033998334 scopus 로고    scopus 로고
    • The PPARs: From orphan receptors to drug discovery
    • Willson TM, Brown PJ, Sternbach DD, et al. The PPARs: from orphan receptors to drug discovery. J Med Chem 2000;43:527-550
    • (2000) J Med Chem , vol.43 , pp. 527-550
    • Willson, T.M.1    Brown, P.J.2    Sternbach, D.D.3
  • 35
    • 0033523672 scopus 로고    scopus 로고
    • "Scaffold-hopping" by topological pharmacophore search: A contribution to virtual screening
    • Schneider G, Neidhart W, Giller T, et al. "Scaffold-hopping" by topological pharmacophore search: a contribution to virtual screening. Angew Chem Int Ed Engl 1999;38:2894-2896
    • (1999) Angew Chem Int Ed Engl , vol.38 , pp. 2894-2896
    • Schneider, G.1    Neidhart, W.2    Giller, T.3
  • 36
    • 47749117132 scopus 로고    scopus 로고
    • Discovery of piperidine-aryl urea-based stearoyl-CoA desaturase 1 inhibitors
    • Xin Z, Zhao H, Serby MD, et al. Discovery of piperidine-aryl urea-based stearoyl-CoA desaturase 1 inhibitors. Bioorg Med Chem Lett 2008;18:4298-4302
    • (2008) Bioorg Med Chem Lett , vol.18 , pp. 4298-4302
    • Xin, Z.1    Zhao, H.2    Serby, M.D.3
  • 37
    • 75449095576 scopus 로고    scopus 로고
    • Abreo M, Chafeev M, Chakka N, et al. WO 2005/011655; 2005
    • Abreo M, Chafeev M, Chakka N, et al. WO 2005/011655; 2005
  • 39
    • 67349142564 scopus 로고    scopus 로고
    • Medicinal chemistry strategies in follow-on drug discovery
    • Zhao H, Guo Z. Medicinal chemistry strategies in follow-on drug discovery. Drug Discov Today 2009;14:516-522
    • (2009) Drug Discov Today , vol.14 , pp. 516-522
    • Zhao, H.1    Guo, Z.2
  • 40
    • 43049173748 scopus 로고    scopus 로고
    • Product-related research: How research can contribute to successful life-cycle management
    • Sandner P, Ziegelbauer K. Product-related research: how research can contribute to successful life-cycle management. Drug Discov Today 2008;13:457-463
    • (2008) Drug Discov Today , vol.13 , pp. 457-463
    • Sandner, P.1    Ziegelbauer, K.2
  • 41
    • 0030572496 scopus 로고    scopus 로고
    • Sildenafil (VIAGRA™), a potent and selective inhibitor of type 5 cGMP phosphodiesterase with utility for the treatment of male erectile dysfunction
    • Nicholas KT, Andrew SB, David B, et al. Sildenafil (VIAGRA™), a potent and selective inhibitor of type 5 cGMP phosphodiesterase with utility for the treatment of male erectile dysfunction. Bioorg Med Chem Lett 1996;6:1819-1824
    • (1996) Bioorg Med Chem Lett , vol.6 , pp. 1819-1824
    • Nicholas, K.T.1    Andrew, S.B.2    David, B.3
  • 42
    • 0037170832 scopus 로고    scopus 로고
    • Imidazo[5,1-f][1,2, and 4]triazin-4 (3H)-ones, a new class of potent PDE 5 inhibitors
    • Haning H, Niewöhner U, Schenke T, et al. Imidazo[5,1-f][1,2, and 4]triazin-4 (3H)-ones, a new class of potent PDE 5 inhibitors. Bioorg Med Chem Lett 2002;12:865-868
    • (2002) Bioorg Med Chem Lett , vol.12 , pp. 865-868
    • Haning, H.1    Niewöhner, U.2    Schenke, T.3
  • 43
    • 73449121150 scopus 로고    scopus 로고
    • Structure-based drug design strategies in medicinal chemistry
    • Andricopulo AD, Salum1 LB, Abraham DJ. Structure-based drug design strategies in medicinal chemistry. Curr Top Med Chem 2009;9:771-790
    • (2009) Curr Top Med Chem , vol.9 , pp. 771-790
    • Andricopulo, A.D.1    Salum, L.B.2    Abraham, D.J.3
  • 44
    • 23844449940 scopus 로고    scopus 로고
    • Computer-based de novo design of drug-like molecules
    • Schneider G, Fechner U. Computer-based de novo design of drug-like molecules. Nat Rev Drug Discov 2005;4:649-663
    • (2005) Nat Rev Drug Discov , vol.4 , pp. 649-663
    • Schneider, G.1    Fechner, U.2
  • 45
    • 33745199815 scopus 로고    scopus 로고
    • Virtual ligand screening: Strategies, perspectives and limitations
    • Klebe G. Virtual ligand screening: strategies, perspectives and limitations. Drug Discov Today 2006;11:580-594
    • (2006) Drug Discov Today , vol.11 , pp. 580-594
    • Klebe, G.1
  • 46
    • 34250880938 scopus 로고    scopus 로고
    • What has computer-aided molecular design ever done for drug discovery?
    • Clark DE. What has computer-aided molecular design ever done for drug discovery? Exp Opin Drug Discov 2006;1:103-110
    • (2006) Exp Opin Drug Discov , vol.1 , pp. 103-110
    • Clark, D.E.1
  • 47
    • 67649225348 scopus 로고    scopus 로고
    • Efficient drug lead discovery and optimization
    • Jorgensen WL. Efficient drug lead discovery and optimization. Acc Chem Res 2009;42:724-733
    • (2009) Acc Chem Res , vol.42 , pp. 724-733
    • Jorgensen, W.L.1
  • 48
    • 70350046714 scopus 로고    scopus 로고
    • Design, synthesis, biological evaluation, and NMR studies of a new series of arylsulfones as selective and potent matrix metalloproteinase-12 inhibitors
    • Nuti E, Panelli L, Casalini F, et al. Design, synthesis, biological evaluation, and NMR studies of a new series of arylsulfones as selective and potent matrix metalloproteinase-12 inhibitors. J Med Chem 2009;52:6347-6361
    • (2009) J Med Chem , vol.52 , pp. 6347-6361
    • Nuti, E.1    Panelli, L.2    Casalini, F.3
  • 49
    • 67650945012 scopus 로고    scopus 로고
    • Second-generation de novo design: A view from a medicinal chemist perspective
    • Zaliani A, Boda K, Seidel T, et al. Second-generation de novo design: a view from a medicinal chemist perspective. J Comput Aided Mol Des 2009;23:593-602
    • (2009) J Comput Aided Mol des , vol.23 , pp. 593-602
    • Zaliani, A.1    Boda, K.2    Seidel, T.3
  • 50
    • 70350046704 scopus 로고    scopus 로고
    • Kinase inihibitor data modeling and de novo inhibitor design with fragment approaches
    • Vieth M, Erickson J, Wang J, et al. Kinase inihibitor data modeling and de novo inhibitor design with fragment approaches. J Med Chem 2009;52:6456-6466
    • (2009) J Med Chem , vol.52 , pp. 6456-6466
    • Vieth, M.1    Erickson, J.2    Wang, J.3
  • 51
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. Molecular frameworks
    • Bemis GW, Murcko MA. The properties of known drugs. 1. Molecular frameworks. J Med Chem 1996;39:2887-2893
    • (1996) J Med Chem , vol.39 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 52
    • 33750464876 scopus 로고    scopus 로고
    • Small molecule natural products in the discovery of therapeutic agents: The synthesis connection
    • Wilson RM, Danishefsky SJ. Small molecule natural products in the discovery of therapeutic agents: the synthesis connection. J Org Chem 2006;71:8329-8351
    • (2006) J Org Chem , vol.71 , pp. 8329-8351
    • Wilson, R.M.1    Danishefsky, S.J.2
  • 53
    • 75449100872 scopus 로고    scopus 로고
    • Case history: Discovery of ixabepilone (IXEMPRA™), a first-in-class epothilone analog for treatment of cancer
    • Borzilleri RM, Vite GD. Case history: discovery of ixabepilone (IXEMPRA™), a first-in-class epothilone analog for treatment of cancer. Ann Rep Med Chem 2008;44:301-322
    • (2008) Ann Rep Med Chem , vol.44 , pp. 301-322
    • Borzilleri, R.M.1    Vite, G.D.2
  • 54
    • 67650299761 scopus 로고    scopus 로고
    • Quantifying biogenic bias in screening libraries
    • Hert J, Irwin JJ, Laggner C, et al. Quantifying biogenic bias in screening libraries. Nat Chem Biol 2009;5:479-483
    • (2009) Nat Chem Biol , vol.5 , pp. 479-483
    • Hert, J.1    Irwin, J.J.2    Laggner, C.3
  • 55
    • 75449118659 scopus 로고    scopus 로고
    • Case history on Tekturna®/Rasilez® (Aliskiren), a highly efficacious direct oral rennin inhibitor as a new therapy for hypertension
    • Maibaum J, Feldman DL. Case history on Tekturna®/Rasilez® (Aliskiren), a highly efficacious direct oral rennin inhibitor as a new therapy for hypertension. Ann Rep Med Chem 2008;44:105-127
    • (2008) Ann Rep Med Chem , vol.44 , pp. 105-127
    • Maibaum, J.1    Feldman, D.L.2
  • 56
    • 68249096185 scopus 로고    scopus 로고
    • Pharmaceutical R&D: The road to positive returns
    • David E, Tramontin T, Zemmel R. Pharmaceutical R&D: the road to positive returns. Nat Rev Drug Discov 2009;8:609-610
    • (2009) Nat Rev Drug Discov , vol.8 , pp. 609-610
    • David, E.1    Tramontin, T.2    Zemmel, R.3
  • 57
    • 34447561049 scopus 로고    scopus 로고
    • Why has R&D productivity declined in the pharmaceutical industry?
    • Ruffolo RR. Why has R&D productivity declined in the pharmaceutical industry? Exp Opin Drug Discov 2006;1:99-102
    • (2006) Exp Opin Drug Discov , vol.1 , pp. 99-102
    • Ruffolo, R.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.