Estimating genetic architectures from artificial-selection responses: A random-effect framework

Theoretical Population Biology

Volumn 77, Issue 2, 2010, Pages 119-130

  Le Rouzic, Arnaud ^a   Skaug, Hans J ^b   Hansen, Thomas F ^a  

^a UNIVERSITY OF OSLO   (Norway)

^b UNIVERSITY OF BERGEN   (Norway)

Author keywords

Hooded rats; Mass breeding; Maximum likelihood; Quantitative genetics; Time series

Indexed keywords

EXPERIMENTAL DESIGN; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; HISTORICAL PERSPECTIVE; MODEL TEST; PHENOTYPIC PLASTICITY; RODENT; SELECTION; SPECIATION (BIOLOGY); STATISTICAL ANALYSIS; TIME SERIES;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; BREEDING; GENETIC DRIFT; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; PHENOTYPE; RAT; STATISTICAL MODEL;

ANIMALS; BREEDING; GENETIC DRIFT; GENETIC RESEARCH; GENETIC VARIATION; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; PHENOTYPE; RATS; SELECTION, GENETIC;

ANIMALIA; RATTUS;

EID: 75349101843     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2009.12.003     Document Type: Article

References (47)

1. Álvarez-Castro J., and Carlborg O. A unified model for functional and statistical epistasis and its application in quantitative trait loci analysis. Genetics 176 (2007) 1151-1167
2. Barton N.H., and Turelli M. Adaptive landscapes, genetic distance and the evolution of quantitative characters. Genet. Res. 49 (1987) 157-173
3. Beniwal B.K., Hastings I.M., Thompson R., and Hill W.G. Estimation of changes in genetic parameters in selected lines of mice using REML with an animal model. 1. Lean mass. Heredity 69 Pt 4 (1992) 352-360
4. Blows M.W., and Hoffmann A.A. A reassessment of genetic limits to evolutionary change. Ecology 86 (2005) 1371-1384
5. Breiman L. Statistical modeling: The two cultures. Stat. Sci. 16 (2001) 199-231
6. Bulmer M.G. The effect of selection on genetic variability. Am. Nat. 105 (1971) 201-211
7. Bürger R. Moments, cumulants, and polygenic dynamics. J. Math. Biol. 30 (1991) 199-213
8. Bürger R. The Mathematical Theory of Selection. Recombination, and Mutation (2000), Wiley, Chichester
9. Burnham K., and Anderson D. Model Selection and Multi-Model Inference (2002), Springer-Verlag, New York, LLC
10. Carlborg O., and Haley C.S. Epistasis: Too often neglected in complex trait studies?. Nat. Rev. Genet. 5 (2004) 618-625
11. Carter A.J.R., Hermisson J., and Hansen T.F. The role of epistatic gene interactions in the response to selection and the evolution of evolvability. Theor. Pop. Biol. 68 (2005) 179-196
12. Castle W., and Phillips J. Piebald Rats and Selection vol. 195 (1914), Carnegie Inst. Wash., Washington, DC
13. Castle W., and Wright S. Studies of Inheritance in Guinea-Pigs and Rats vol. 241 (1916), Carnegie Inst. Wash., Washington, DC
14. Chevalet M. An approximate theory of selection assuming a finite number of quantitative trait loci. Genet. Sel. Evol. 26 (1994) 379-400
15. Cox D., and Hinkley D. Theoretical Statistics (1974), Chapman & Hall
16. Dudley J., and Lambert R. 100 generations of selection for oil and protein in corn. Plant Breed. Rev. 24 (2004) 79-110
17. Dunnington E., and Siegel P. Long-term divergent selection for eight-week body weight in white plymouth rock chickens. Poultry Sci. 75 (1996) 1168-1179
18. Falconer D., and MacKay T. Introduction to Quantitative Genetics. 4th ed (1996), Pearson Education Ltd
19. Falconer D.S. Replicated selection for body weight in mice. Genet. Res. 22 (1973) 291-321
20. Falconer D.S. Early selection experiments. Ann. Rev. Genet. 26 (1992) 1-14
21. Fisher R.A. The correlation between relatives on the supposition of Mendelian inheritance. Trans. Roy. Soc. Edinburgh 52 (1918) 339-433
22. Gianola D., and Fernando R. Bayesian methods in animal breeding theory. J. Anim. Sci. 63 (1986) 217-244
23. Hansen T.F., and Wagner G.P. Modeling genetic architecture: A multilinear theory of gene interaction. Theor. Pop. Biol. 59 (2001) 61-86
24. Hill W.G., and Caballero A. Artificial selection experiments. Anu. Rev. Ecol. Syst. 23 (1992) 287-310
25. Holt M., Meuwissen T., and Vangen O. Long-term responses, changes in genetic variances and inbreeding depression from 122 generations of selection on increased litter size in mice. J. Anim. Breed. Genet. 122 (2005) 199-209
26. Johnson T., and Barton N. Theoretical models of selection and mutation on quantitative traits. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360 (2005) 1411-1425
27. Keightley P.D. Genetic basis of response to 50 generations of selection on body weight in inbred mice. Genetics 148 (1998) 1931-1939
28. Lande R. The maintenance of genetic variability by mutation in a polygenic character with linked loci. Genet. Res. 26 (1975) 221-235
29. Lande R. The response to selection on major and minor mutations affecting a metrical trait. Heredity 50 (1983) 47-65
30. Le Rouzic A., Siegel P.B., and Carlborg O. Phenotypic evolution from genetic polymorphisms in a radial network architecture. BMC Biol. 5 (2007) 50
31. Lynch M., and Walsh B. Genetics and Analysis of Quantitative Traits (1997), Sinauer Assoc
32. MacCurdy H., and Castle W. Selection and Cross-Breeding in Relation to the Inheritance of Coat-Pigments and Coat-Patterns in Rats and Guinea-Pigs vol. 70 (1907), Carnegie Instit. Wash., Washington, DC
33. Mackay T.F. The genetic architecture of quantitative traits: Lessons from Drosophila. Curr. Opin. Genet. Dev. 14 (2004) 253-257
34. Mackay T.F., Fry J.D., Lyman R.F., and Nuzhdin S.V. Polygenic mutation in Drosophila melanogaster: Estimates from response to selection of inbred strains. Genetics 136 (1994) 937-951
35. Maher B. Personal genomes: The case of the missing heritability. Nature 456 (2008) 18-21
36. Martinez V., Bunger L., and Hill W.G. Analysis of response to 20 generations of selection for body composition in mice: Fit to infinitesimal model assumptions. Genet. Sel. Evol. 32 (2000) 3-21
37. Mezey J.G., Houle D., and Nuzhdin S.V. Naturally segregating quantitative trait loci affecting wing shape of Drosophila melanogaster. Genetics 169 (2005) 2101-2113
38. O'Hara R.B., Cano J.M., Ovaskainen O., Teplitsky C., and Alho J.S. Bayesian approaches in evolutionary quantitative genetics. J. Evol. Biol. 21 (2008) 949-957
39. Ollivier L. On the use of animal models in the analysis of selection experiments. Genet. Sel. Evol. 31 (1999) 135-148
40. Orr H.A. The genetic theory of adaptation: a brief history. Nat. Rev. Genet. 6 (2005) 119-127
41. Orr H.A., and Coyne J.A. The genetics of adaptation: A reassessment. Am. Nat. 140 (1992) 725-742
42. Robertson A. A theory of limits in artificial selection. Proc. R. Soc. Lond. B Biol. Sci. 153 (1960) 234-249
43. Skaug H.J., and Fournier D. Automatic approximation of the marginal likelihood in non-gaussian hierarchical models. Comput. Statist. Data Anal. 56 (2006) 699-709
44. Turelli M., and Barton N. Dynamics of polygenic characters under selection. Theor. Pop. Biol. 38 (1990) 1-57
45. van der Werf J.H., and de Boer I.J. Estimation of additive genetic variance when base populations are selected. J. Anim. Sci. 68 (1990) 3124-3132
46. Weber K.E., and Diggins L.T. Increased selection response in larger populations. II. Selection for ethanol vapor resistance in Drosophila melanogaster at two population sizes. Genetics 125 (1990) 585-597
47. Zhang X., and Hill W. Predictions of patterns of response to artificial selection in lines derived from natural populations. Genetics 169 (2005) 411-425