Dynamics of organic-aggregate-associated bacterial communities and related environmental factors-in Lake Taihu, a large eutrophic shallow lake in China

Limnology and Oceanography

Volumn 55, Issue 2, 2010, Pages 469-480

  Tang, Xiangming ^a   Gao, Guang ^a   Chao, Jianying ^a   Wang, Xiaodong ^a   Zhu, Guangwei ^a   Qin, Boqiang ^a  

^a NANJING INSTITUTE OF GEOGRAPHY AND LIMNOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATED SLUDGE; BACTERIUM; DISSOLVED OXYGEN; EUTROPHIC ENVIRONMENT; GENE; MICROAGGREGATE; MICROBIAL COMMUNITY; NUTRIENT ENRICHMENT; PHYLOGENETICS; POLYMORPHISM; RESUSPENSION; RNA; SEASONAL VARIATION; SHALLOW WATER; SPATIOTEMPORAL ANALYSIS; SUCCESSION; WATER TEMPERATURE;

CHINA; JIANGSU; MEILIANG BAY; TAIHU LAKE;

BACTERIA (MICROORGANISMS);

EID: 75249087078     PISSN: 00243590     EISSN: None     Source Type: Journal    
DOI: 10.4319/lo.2010.55.2.0469     Document Type: Article

References (50)

1. ALLGAIER, M., AND H.-P. GROSSART. 2006. Seasonal dynamics and phylogenetic diversity of free-living and particle-associated bacterial communities in four lakes in northeastern Germany. Aquat. Microb. Ecol. 45: 115-128.
2. BOCKELMANN, U., W. MANZ, T. R. NEU, AND U. SZEWZYK. 2000. Characterization of the microbial community of lotie organic aggregates ('river snow') in the Elbe River of Germany by cultivation and molecular methods. FEMS Microbiol. Ecol. 33: 157-170.
3. BOUCHER, D., L. JARDILLIER, AND D. DEBROAS. 2006. Succession of bacterial community composition over two consecutive years in two aquatic systems: A natural lake and a lake-reservoir. FEMS Microbiol. Ecol. 55: 79-97.
4. BRUMMER, I. H. M., A. FELSKE, AND I. WAGNER-DOBLER. 2000. Biofilm community structure in polluted rivers: Abundance of dominant phylogenetic groups over a complete annual cycle. Appl. Environ. Microbiol. 66: 3078-3082.
5. CHEN, Y., B. QIN, K. TEUBNER, AND M. T. DOKULIL. 2003. Longterm dynamics of phytoplankton assemblages: Microcystisdomination in Lake Taihu, a large shallow lake in China. J. Plankton Res. 25: 445-453.
6. CLARKE, K. R. 1993. Non-parametric multivariate analyses of changes in community structure. Aust. J. Ecol. 18: 117-143.
7. CRUMP, B. C., AND J. A. BAROSS. 1996. Particle-attached bacteria and heterotrophic plankton associated with the Columbia River estuarine turbidity maxima. Mar. Ecol. Prog. Ser. 138: 265-273.
8. AND J. E. HoBBIE. 2005. Synchrony and seasonality in bacterioplankton communities of two temperate rivers. Limnol. Oceanogr. 50: 1718-1729.
9. DELONG, E. F., D. G. FRANKS, AND A. L. ALLDREDGE. 1993. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 38: 924-934.
10. DESOUZA, M. J. 2004. Bacterial association with particles: Aggregation to dissolution, p. 49-61. In N. Ramaiah [ed.], Marine microbiology: Facets and opportunities. National Institute of Oceanography, Goa.
11. EGERT, M., AND M. W. FRIEDRICH. 2003. Formation of pseudoterminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure. Appl. Environ. Microbiol. 69: 2555-2562.
12. EILER, A., AND S. BERTILSSON. 2004. Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ. Microbiol. 6: 1228-1243.
13. J. A. OLSSON, AND S. BERTILSSON. 2006. Diurnal variations in the auto- and heterotrophic activity of cyanobacterial phycospheres (Gloeotrichia echinulaia) and the identity of attached bacteria. Freshw. Biol. 51: 298-311.
14. FUERST, J. A. 1995. The Planctomycetes: Emerging models for microbial ecology, evolution and cell biology. Microbiol.-UK 141: 1493-1506.
15. GLÖCKNER, F. O., B. M. FUCHS, AND R. AMANN. 1999. Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65: 3721-3726.
16. GROSSART, H.-P., T. KIøRBOE, K. TANG, AND H. PLOUG. 2003. Bacterial colonization of particles: Growth and interactions. Appl. Environ. Microbiol. 69: 3500-3509.
17. AND H. PLOUG. 2000. Bacterial production and growth efficiencies: Direct measurements on riverine aggregates. Limnol. Oceanogr. 45: 436-445.
18. K. TANG, T. KIøRBOE, AND H. PLOUG. 2007. Comparison of cell-specific activity between free-living and attached bacteria using isolates and natural assemblages. FEMS Microbiol. Lett. 266: 194-200.
19. HAHN, M. W. 2003. Isolation of strains belonging to the cosmopolitan Pofynuckobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl. Environ. Microbiol. 69: 5248-5254.
20. HAMMER, ø., D. A. T. HARPER, AND P. D. RYAN. 2001. PAST: Paleontologica! Statistics Software Package for education and data analysis. Palaeontologia Electronica. Available from http://palaeo-electronica.org/2001-l/ past/past.pdf.
21. HENRIKSEN, J. R. 2004. Sequence library comparison, webLIBSHUFF version 0.96. Available from http://libshuff.mib.uga. edu.
22. JIN, X. C., AND Q. Y. Tu. 1990. The standard methods for observation and analysis of lake eutrophication, 2nd ed. China Environmental Science Press.
23. KENT, A. D., A. C. YANNARELL, J. A. RUSAK, E. W. TRIPLETT, AND K. D. MCMAHON. 2007. Synchrony in aquatic microbial community dynamics. ISME J. 1: 38-47.
24. KIRCHMAN, D. L. 2002. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol. Ecol. 39: 91-100.
25. LINDSTRÖM, E. S., AND A.-K. BERGSTRÖM. 2004. Influence of inlet bacteria on bacterioplankton assemblage composition in lakes of different hydraulic retention time. Limnol. Oceanogr. 49: 125-136.
26. MARUYAMA, T., K. KATO, A. YOKOYAMA, T. TANAKA, A. HIRAISHI, AND H. D. PARK. 2003. Dynamics of microcystin-degrading bacteria in mucilage of mucicrocystis. Microb. Ecol. 46:279-288.
27. NEWTON, R. J., A. D. KENT, E. W. TRIPLETT, AND K. D. MCMAHON. 2006. Microbial community dynamics in a humic lake: Differential persistence of common freshwater phylotypes. Environ. Microbiol. 8: 956-970.
28. PAERL, H, W. 1974. Bacterial uptake of dissolved organic matter in relation to detrital aggregation in marine and freshwater systems. Limnol. Oceanogr. 19: 966-972.
29. QIN, B. Q. 2008. Lake Taihu, China: Dynamics and environmental change. Springer Netherlands.
30. W. P. Hu, AND W. M. CHEN. 2004. Succession of ecological environment and its mechanism in Lake Taihu. China Science Press [In Chinese.].
31. RzHETSKY, A., AND M. NEI, 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9: 945-967.
32. SCHWEITZER, B., I. HUBER, R. AMANN, W. LUDWIG, AND M. SIMON. 2001. α- and β-Proteobacteria control the consumption and release of amino acids on lake snow aggregates. Appl. Environ. Microbiol. 67: 632-645.
33. SHADE, A., S. E. JONES, AND K. D. MCMAHON. 2008. The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics. Environ. Microbiol. 10: 1057-1067.
34. SIMON, M., H.-P. GROSSART, B. SCHWEITZER, AND H. PLOUG. 2002. Microbial ecology of organic aggregates in aquatic ecosystems. Aquat. Microb. Ecol. 28: 175-211.
35. SINGLETON, D. R., M. A. FURLONG, S. L. RATHBUN, AND W. B. WHITMAN. 2001. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67: 4374-4376.
36. TAMURA, K., J. DUDLEY, M. NEI, AND S. KUMAR. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
37. TANG, X., G. GAO, B. QIN, L. ZHU, J. CHAO, J. WANG, AND G. YANG. 2009. Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater lake (Lake Taihu, China). Microb. Ecol. 58: 307-322.
38. TER BRAAK, C. J. F., AND P. ŠMILAUER. 2002. CANOCO reference manual and CanoDraw for windows user's guide: Software for canonical community ordination (version 4.5). Microcomputer Power.
39. VELJI M. L, AND L. J. ALBRIGHT. 1993. Improved sample preparation for enumeration of aggregated aquatic substrate bacteria, p. 139-142. In P. F. Kemp, B. F. Sherr, E. B. Sherr and J. J. Cole [eds.], Handbook of methods in aquatic microbial ecology. Lewis.
40. WEISS, P., B. SCHWEITZER, R. AMANN, AND M, SIMON. 1996. Identification in situ and dynamics of bacteria on limnetic organic aggregates (lake snow). Appl. Environ. Microbiol. 62: 1998-2005.
41. WETZEL, R. G. 2001. Limnology: Lake and river ecosystems, 3rd ed. Academic Press.
42. WÖRNER, U., H. ZIMMERMANN-TIMM., AND H. KAUSCH. 2002. Aggregate-associated bacteria and heterotrophic flagellates in the River Elbe-their relative significance along the longitudinal profile from km 46 to km 583. Int. Rev. Hydrobiol. 87: 255-266.
43. Wu, Q., Y. CHEN, K. XU, Z. LIU, AND M. HAHN. 2007a. Intrahabitat heterogeneity of microbial food web structure under the regime of eutrophication and sediment resuspension in the large subtropical shallow Lake Taihu, China. Hydrobiologia 581: 241-254. (Pubitemid 46434696)
44. AND M. HAHN. 2006. Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels. FEMS Microbiol. Ecol. 57: 67-79.
45. G. ZWART, J. Wu, M. P. K.-V. AGTERVELD, S. LIU, AND M. W. HAHN. 2007b. Submersed macrophytes play a key role in structuring bacterioplankton community composition in the large, shallow, subtropical Taihu Lake, China. Environ, Microbiol. 9: 2765-2774.
46. Wu, X., W. XI, W. YE, AND H. YANG. 2007C. Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by 16S rRNA gene sequences. FEMS Microbiol. Ecol. 61: 85-96.
47. XING, P., AND F. KONG. 2007. Intra-habitat heterogeneity of environmental factors regulating bacterioplankton community composition in Lake Taihu, China. Aquat. Microb. Ecol. 48: 113-122.
48. ZHOU, J., M. A. BRUNS, AND J. M. TIEDJE. 1996. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62: 316-322.
49. ZIMMERMANN-TIMM, H. 2002. Characteristics, dynamics and importance of aggregates in rivers-an invited review. Int. Rev. Hydrobiol. 87: 197-240.
50. ZWART, G., B. C. CRUMP, M. P. K.-V. AGTERVELD, F. HAGEN, AND S.-K, HAN. 2002. Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28: 141-155.