-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
0036840895
-
2O release and on the community structure of ammonia oxidizers and denitrifiers
-
2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl. Environ. Microbiol. 68:5685-5692.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5685-5692
-
-
Avrahami, S.1
Conrad, R.2
Braker, G.3
-
3
-
-
0030817782
-
Analysis of mer gene subclasses within bacterial communities in soils and sediments resolved by fluorescent-PCR-restriction fragment length polymorphism profiling
-
Bruce, K. D. 1997. Analysis of mer gene subclasses within bacterial communities in soils and sediments resolved by fluorescent-PCR-restriction fragment length polymorphism profiling. Appl. Environ. Microbiol. 63:4914-4919.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4914-4919
-
-
Bruce, K.D.1
-
4
-
-
0031882598
-
Terminal restriction fragment patterns (TRFPs), a rapid. PCR-based method for the comparison of complex bacterial communities
-
Clement, B. G., L. E. Kehl, K. L. Debord, and C. L. Kitts. 1998. Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J. Microbiol. Methods 31:135-142.
-
(1998)
J. Microbiol. Methods
, vol.31
, pp. 135-142
-
-
Clement, B.G.1
Kehl, L.E.2
Debord, K.L.3
Kitts, C.L.4
-
5
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes - Characterization of a gene coding for 16S-ribosomal RNA
-
Edwards, U., T. Rogall, H. Blocker, M. Emde, and E. C. Bottger. 1989. Isolation and direct complete nucleotide determination of entire genes - characterization of a gene coding for 16S-ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
6
-
-
0033770992
-
Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom
-
Gonzalez, J. M., R. Simo, R. Massana, J. S. Covert, E. O. Casamayor, C. Pedros-Alio, and M. A. Moran. 2000. Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl. Environ. Microbiol. 66:4237-4246.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4237-4246
-
-
Gonzalez, J.M.1
Simo, R.2
Massana, R.3
Covert, J.S.4
Casamayor, E.O.5
Pedros-Alio, C.6
Moran, M.A.7
-
7
-
-
0040336333
-
Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
-
Grosskopf, R., S. Stubner, and W. Liesack. 1998. Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl. Environ. Microbiol. 64:4983-4989.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4983-4989
-
-
Grosskopf, R.1
Stubner, S.2
Liesack, W.3
-
8
-
-
0028071557
-
Collection of small-subunit (16S and 16S-like) ribosomal-RNA structures1994
-
Gutell, R. R. 1994. Collection of small-subunit (16S and 16S-like) ribosomal-RNA structures1994. Nucleic Acids Res. 22:3502-3507.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3502-3507
-
-
Gutell, R.R.1
-
9
-
-
0030883816
-
Betaine improves the PCR amplification of GC-rich DNA sequences
-
Henke, W., K. Herdel, K. Jung, D. Schnorr, and S. A. Loening. 1997. Betaine improves the PCR amplification of GC-rich DNA sequences. Nucleic Acids Res. 25:3957-3958.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3957-3958
-
-
Henke, W.1
Herdel, K.2
Jung, K.3
Schnorr, D.4
Loening, S.A.5
-
10
-
-
0027745825
-
Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions
-
Jensen, M. A., and N. Straus. 1993. Effect of PCR conditions on the formation of heteroduplex and single-stranded DNA products in the amplification of bacterial ribosomal DNA spacer regions. PCR Methods Appl. 3:186-194.
-
(1993)
PCR Methods Appl.
, vol.3
, pp. 186-194
-
-
Jensen, M.A.1
Straus, N.2
-
11
-
-
0035040382
-
Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
-
Kitts, C. L. 2001. Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Curr. Issues Intest. Microbiol. 2:17-25.
-
(2001)
Curr. Issues Intest. Microbiol.
, vol.2
, pp. 17-25
-
-
Kitts, C.L.1
-
12
-
-
0029786831
-
Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism
-
Lee, D. H., Y. G. Zo, and S. J. Kim. 1996. Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism. Appl. Environ. Microbiol. 62:3112-3120.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3112-3120
-
-
Lee, D.H.1
Zo, Y.G.2
Kim, S.J.3
-
13
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
14
-
-
0035206819
-
Molecular analyses of methyl-coenzyme M reductase-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage
-
Lueders, T., K. J. Chin, R. Conrad, and M. Friedrich. 2001. Molecular analyses of methyl-coenzyme M reductase-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environ. Microbiol. 3:194-204.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 194-204
-
-
Lueders, T.1
Chin, K.J.2
Conrad, R.3
Friedrich, M.4
-
15
-
-
0033933786
-
Archaeal population dynamics during sequential reduction processes in rice field soil
-
Lueders, T., and M. Friedrich. 2000. Archaeal population dynamics during sequential reduction processes in rice field soil. Appl. Environ. Microbiol. 66:2732-2742.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2732-2742
-
-
Lueders, T.1
Friedrich, M.2
-
16
-
-
0037225001
-
Evaluation of PCR amplification bias by T-RFLP analysis of SSU rRNA and mcrA genes using defined template mixtures of methanogenic pure cultures and soil DNA extracts
-
Lueders, T., and M. W. Friedrich. 2003. Evaluation of PCR amplification bias by T-RFLP analysis of SSU rRNA and mcrA genes using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl. Environ. Microbiol. 69:320-326.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 320-326
-
-
Lueders, T.1
Friedrich, M.W.2
-
17
-
-
0033152351
-
Terminal restriction fragment length polymorphism (TRFLP): An emerging method for characterizing diversity among homologous populations of amplification products
-
Marsh, T. L. 1999. Terminal restriction fragment length polymorphism (TRFLP): an emerging method for characterizing diversity among homologous populations of amplification products. Curr. Opin. Microbiol. 2:323-327.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 323-327
-
-
Marsh, T.L.1
-
18
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder, M. M., J. M. Arrieta, G. Muyzer, C. Winter, and G. J. Herndl. 1999. Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65:3518-3525.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3518-3525
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.J.5
-
19
-
-
0033152336
-
DGGE/TGGE a method for identifying genes from natural ecosystems
-
Muyzer, G. 1999. DGGE/TGGE a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol. 2:317-322.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 317-322
-
-
Muyzer, G.1
-
20
-
-
0029097821
-
Phylogenetic relationship of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Muyzer, G., A. Teske, C. O. Wirsen, and H. W. Jannasch. 1995. Phylogenetic relationship of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164:165-172.
-
(1995)
Arch. Microbiol.
, vol.164
, pp. 165-172
-
-
Muyzer, G.1
Teske, A.2
Wirsen, C.O.3
Jannasch, H.W.4
-
21
-
-
0022432940
-
Type-II restriction endonucleases cleave single-stranded DNAs in general
-
Nishigaki, K., Y. Kaneko, H. Wakuda, Y. Husimi, and T. Tanaka. 1985. Type-II restriction endonucleases cleave single-stranded DNAs in general. Nucleic Acids Res. 13:5747-5760.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 5747-5760
-
-
Nishigaki, K.1
Kaneko, Y.2
Wakuda, H.3
Husimi, Y.4
Tanaka, T.5
-
22
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn, A. M., E. R. B. Moore, and K. N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.B.2
Timmis, K.N.3
-
23
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz, M. F., and C. M. Cavanaugh. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:3724-3730.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
24
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia, J. 1998. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 95:1460-1465.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia, J.1
-
25
-
-
0031764376
-
A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
-
Schwieger, F., and C. C. Tebbe. 1998. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64:4870-4876.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4870-4876
-
-
Schwieger, F.1
Tebbe, C.C.2
-
26
-
-
0032925262
-
Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota
-
Simpson, J. M., V. J. McCracken, B. A. White, H. R. Gaskins, and R. I. Mackie. 1999. Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota. J. Microbiol. Methods 36:167-179.
-
(1999)
J. Microbiol. Methods
, vol.36
, pp. 167-179
-
-
Simpson, J.M.1
McCracken, V.J.2
White, B.A.3
Gaskins, H.R.4
Mackie, R.I.5
-
27
-
-
0037031131
-
Characterization of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions
-
Song, B., L. J. Kerkhof, and M. M. Haggblom. 2002. Characterization of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions. FEMS Microbiol. Lett. 213:183-188.
-
(2002)
FEMS Microbiol. Lett.
, vol.213
, pp. 183-188
-
-
Song, B.1
Kerkhof, L.J.2
Haggblom, M.M.3
-
28
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
29
-
-
0031790538
-
Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
-
Suzuki, M. T., M. S. Rappe, and S. J. Giovannoni. 1998. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl. Environ. Microbiol. 64:4522-4529.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4522-4529
-
-
Suzuki, M.T.1
Rappe, M.S.2
Giovannoni, S.J.3
-
30
-
-
0345195995
-
Determination of microbial diversity in environmental samples - Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode, F., U. B. Goebel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples - pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
-
(1997)
FEMS Microbiol. Rev.
, vol.21
, pp. 213-229
-
-
Von Wintzingerode, F.1
Goebel, U.B.2
Stackebrandt, E.3
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