-
1
-
-
34250009428
-
-
Short protocols in molecular biology, pp. Wiley, NewYork.
-
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA Struhl K (2002) Short protocols in molecular biology, pp. 52 87. Wiley, NewYork.
-
(2002)
, pp. 52-87
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
2
-
-
0000450150
-
Bacterial diversity in an Arctic lake: A freshwater SAR11 cluster
-
Bahr M, Hobbie JE Sogin ML (1996) Bacterial diversity in an Arctic lake: a freshwater SAR11 cluster. Aquat Microb Ecol 11:271 277.
-
(1996)
Aquat Microb Ecol
, vol.11
, pp. 271-277
-
-
Bahr, M.1
Hobbie, J.E.2
Sogin, M.L.3
-
3
-
-
0001463548
-
Nonparametric estimation of the number of classes in a population
-
Chao A (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11:265 270.
-
(1984)
Scand J Stat
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
4
-
-
0036804440
-
Rapid Daphnia-mediated changes in microbial community structure: An experimental study
-
Degans H, Zöllner E, Van der Gucht K, De Meester L Jürgens K (2002) Rapid Daphnia-mediated changes in microbial community structure: an experimental study. FEMS Microbiol Ecol 42:137 149.
-
(2002)
FEMS Microbiol Ecol
, vol.42
, pp. 137-149
-
-
Degans, H.1
Zöllner, E.2
Van Der Gucht, K.3
De Meester, L.4
Jürgens, K.5
-
5
-
-
10044278979
-
Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes
-
Eiler A Bertilsson S (2004) Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 6:1228 1243.
-
(2004)
Environ Microbiol
, vol.6
, pp. 1228-1243
-
-
Eiler, A.1
Bertilsson, S.2
-
6
-
-
0035977793
-
Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
-
Fandino LB, Riemann L, Steward GF, Long RA Azam F (2001) Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat Microb Ecol 23:119 130.
-
(2001)
Aquat Microb Ecol
, vol.23
, pp. 119-130
-
-
Fandino, L.B.1
Riemann, L.2
Steward, G.F.3
Long, R.A.4
Azam, F.5
-
7
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368 376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
8
-
-
0033754255
-
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria
-
Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 66:5053 5065.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5053-5065
-
-
Glöckner, F.O.1
Zaichikov, E.2
Belkova, N.3
Denissova, L.4
Pernthaler, J.5
Pernthaler, A.6
Amann, R.7
-
9
-
-
0345269205
-
Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia
-
Hahn MW, Lunsdorf H, Wu Q, Schauer M, Höfle MG, Boenigk J Stadler P (2003) Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia. Appl Environ Microbiol 69:1442 1451.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1442-1451
-
-
Hahn, M.W.1
Lunsdorf, H.2
Wu, Q.3
Schauer, M.4
Höfle, M.G.5
Boenigk, J.6
Stadler, P.7
-
12
-
-
0345104351
-
Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis
-
Höfle MG, Haas H Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164 3174.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3164-3174
-
-
Höfle, M.G.1
Haas, H.2
Dominik, K.3
-
13
-
-
34250027091
-
-
Kowalchuk, G.A., de Bruijn, F.J., Head, I.M., Akkermans, A.D. van Elsas, J.D., eds), pp. Academic Publisher, Kluwer.
-
Hughes J Bohannan B (2004) Application of Ecological Diversity Statistics in Microbial Ecology (Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans AD van Elsas JD, eds), pp. 1321 1344. Academic Publisher, Kluwer.
-
(2004)
Application of Ecological Diversity Statistics in Microbial Ecology
, pp. 1321-1344
-
-
Hughes, J.1
Bohannan, B.2
-
14
-
-
0034933418
-
Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton
-
Jaspers E, Nauhaus K, Cypionka H Overmann J (2001) Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol Ecol 36:153 164.
-
(2001)
FEMS Microbiol Ecol
, vol.36
, pp. 153-164
-
-
Jaspers, E.1
Nauhaus, K.2
Cypionka, H.3
Overmann, J.4
-
15
-
-
0028117074
-
Use of fluorochromes for direct enumeration of total bacteria in environmental samples: Past and present
-
Kepner R Pratt JR (1994) Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present. Microbiol Rev 58:603 615.
-
(1994)
Microbiol Rev
, vol.58
, pp. 603-615
-
-
Kepner, R.1
Pratt, J.R.2
-
16
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner MK Felsenstein J (1994) A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 11:459 468.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
17
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150 163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
18
-
-
33947196711
-
Analysis of water environmental change in Taihu watershed
-
Lin ZX (2002) Analysis of water environmental change in Taihu watershed. J Lake Sci 14:97 103.
-
(2002)
J Lake Sci
, vol.14
, pp. 97-103
-
-
Lin, Z.X.1
-
19
-
-
0031725011
-
Flavobacterium hibernum sp. nov., a lactose-utilizing bacterium from a freshwater Antarctic lake
-
McCammon SA, Innes BH, Bowman JP, Franzmann PD, Dobson SJ, Holloway PE, Skerratt JH, Nichols PD Rankin LM (1998) Flavobacterium hibernum sp. nov., a lactose-utilizing bacterium from a freshwater Antarctic lake. Int J Syst Bacteriol 48 Pt 4:1405 1412.
-
(1998)
Int J Syst Bacteriol
, vol.48
, Issue.4
, pp. 1405-1412
-
-
McCammon, S.A.1
Innes, B.H.2
Bowman, J.P.3
Franzmann, P.D.4
Dobson, S.J.5
Holloway, P.E.6
Skerratt, J.H.7
Nichols, P.D.8
Rankin, L.M.9
-
20
-
-
0031838852
-
Contrasts between marine and freshwater bacterial community composition: Analyses of communities in Lake George and six other Adirondack lakes
-
Methé BA, Hiorns WD Zehr JP (1998) Contrasts between marine and freshwater bacterial community composition: analyses of communities in Lake George and six other Adirondack lakes. Limnol Oceanogr 43:368 374.
-
(1998)
Limnol Oceanogr
, vol.43
, pp. 368-374
-
-
Methé, B.A.1
Hiorns, W.D.2
Zehr, J.P.3
-
21
-
-
34249994181
-
-
Balows, A., Trüper, H.G., Dworkin, M., Harder, W. Schleifer, K-H, eds), pp. Springer, New York.
-
Mulder EG Deinema MH (1992) The Sheathed Bacteria (Balows A, Trüper HG, Dworkin M, Harder W Schleifer K-H, eds), pp. 2612 2624. Springer, New York.
-
(1992)
The Sheathed Bacteria
, pp. 2612-2624
-
-
Mulder, E.G.1
Deinema, M.H.2
-
22
-
-
0036794822
-
Relationship between bacterial community composition and bottom-up versus top-down variables in four eutrophic shallow lakes
-
Muylaert K, Van der Gucht K, Vloemans N, De Meester L, Gillis M Vyverman W (2002) Relationship between bacterial community composition and bottom-up versus top-down variables in four eutrophic shallow lakes. Appl Environ Microbiol 68:4740 4750.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4740-4750
-
-
Muylaert, K.1
Van Der Gucht, K.2
Vloemans, N.3
De Meester, L.4
Gillis, M.5
Vyverman, W.6
-
23
-
-
0035344215
-
Predator-specific enrichment of Actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture
-
Pernthaler J, Posch T, Šimek K, Vrba J, Pernthaler A, Glöckner FO, Nubel U, Psenner R Amann R (2001) Predator-specific enrichment of Actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Appl Environ Microbiol 67:2145 2155.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2145-2155
-
-
Pernthaler, J.1
Posch, T.2
Šimek, K.3
Vrba, J.4
Pernthaler, A.5
Glöckner, F.O.6
Nubel, U.7
Psenner, R.8
Amann, R.9
-
24
-
-
0343340084
-
Hydrodynamics of Lake Taihu, China
-
Qin BQ (1999) Hydrodynamics of Lake Taihu, China. AMBIO 28:669 673.
-
(1999)
AMBIO
, vol.28
, pp. 669-673
-
-
Qin, B.Q.1
-
25
-
-
0033951021
-
Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
-
Riemann L, Steward GF Azam F (2000) Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol 66:578 587.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 578-587
-
-
Riemann, L.1
Steward, G.F.2
Azam, F.3
-
26
-
-
0027838970
-
Alternative Equilibria in Shallow Lakes
-
Scheffer M, Hosper SH, Meijer ML, Moss B Jeppensen E (1993) Alternative Equilibria in Shallow Lakes. Trends Ecol Evol 8:275 279.
-
(1993)
Trends Ecol Evol
, vol.8
, pp. 275-279
-
-
Scheffer, M.1
Hosper, S.H.2
Meijer, M.L.3
Moss, B.4
Jeppensen, E.5
-
27
-
-
0036047020
-
Bacterial distribution and phylogenetic diversity in the Changjiang estuary before the construction of the Three Gorges Dam
-
Sekiguchi H, Koshikawa H, Hiroki M, Murakami S, Xu K, Watanabe M, Nakahara T, Zhu M Uchiyama H (2002a) Bacterial distribution and phylogenetic diversity in the Changjiang estuary before the construction of the Three Gorges Dam. Microb Ecol 43:82 91.
-
(2002)
Microb Ecol
, vol.43
, pp. 82-91
-
-
Sekiguchi, H.1
Koshikawa, H.2
Hiroki, M.3
Murakami, S.4
Xu, K.5
Watanabe, M.6
Nakahara, T.7
Zhu, M.8
Uchiyama, H.9
-
28
-
-
0036795083
-
Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
-
Sekiguchi H, Watanabe M, Nakahara T, Xu B Uchiyama H (2002b) Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl Environ Microbiol 68:5142 5150.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5142-5150
-
-
Sekiguchi, H.1
Watanabe, M.2
Nakahara, T.3
Xu, B.4
Uchiyama, H.5
-
29
-
-
0032152197
-
Species diversity of picoplankton from Lake Baikal by comparative analysis of 5′-terminal segments of 16S rRNA genes
-
Semenova EA Kuznedelov KD (1998) Species diversity of picoplankton from Lake Baikal by comparative analysis of 5′-terminal segments of 16S rRNA genes. Mol Biol 32:895 901.
-
(1998)
Mol Biol
, vol.32
, pp. 895-901
-
-
Semenova, E.A.1
Kuznedelov, K.D.2
-
30
-
-
0031574072
-
The CLUSTAL
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F Higgins DG (1997) The CLUSTAL. Nucleic Acids Res 25:4876 4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
31
-
-
0036781913
-
Phylogenetic diversity of winter bacterioplankton of eutrophic siberian reservoirs as revealed by 16S rRNA gene sequence
-
Trusova MY Gladyshev MI (2002) Phylogenetic diversity of winter bacterioplankton of eutrophic siberian reservoirs as revealed by 16S rRNA gene sequence. Microb Ecol 44:252 259.
-
(2002)
Microb Ecol
, vol.44
, pp. 252-259
-
-
Trusova, M.Y.1
Gladyshev, M.I.2
-
32
-
-
0035033231
-
Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake
-
Urbach E, Vergin KL, Young L, Morse A, Larson GL Giovannoni SJ (2001) Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake. Limnol Oceanog 46:557 572.
-
(2001)
Limnol Oceanog
, vol.46
, pp. 557-572
-
-
Urbach, E.1
Vergin, K.L.2
Young, L.3
Morse, A.4
Larson, G.L.5
Giovannoni, S.J.6
-
33
-
-
0035544053
-
Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes
-
Van Der Gucht K, Sabbe K, De Meester L, Vloemans N, Zwart G, Gillis M Vyverman W (2001) Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. Environ Microbiol 3:680 690.
-
(2001)
Environ Microbiol
, vol.3
, pp. 680-690
-
-
Van Der Gucht, K.1
Sabbe, K.2
De Meester, L.3
Vloemans, N.4
Zwart, G.5
Gillis, M.6
Vyverman, W.7
-
34
-
-
20444400602
-
Characterization of bacterial communities in four freshwater lakes differing in nutrient load and food web structure
-
Van der Gucht K, Vandekerckhove T, Vloemans N, Cousin S, Muylaert K, Sabbe K, Gillis M, Declerck S, De Meester L Vyverman W (2005) Characterization of bacterial communities in four freshwater lakes differing in nutrient load and food web structure. FEMS Microbiol Ecol 53:205 220.
-
(2005)
FEMS Microbiol Ecol
, vol.53
, pp. 205-220
-
-
Van Der Gucht, K.1
Vandekerckhove, T.2
Vloemans, N.3
Cousin, S.4
Muylaert, K.5
Sabbe, K.6
Gillis, M.7
Declerck, S.8
De Meester, L.9
Vyverman, W.10
-
35
-
-
0032975678
-
Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses
-
Van Hannen EJ, Zwart G, van Agterveld MP, Gons HJ, Ebert J Laanbroek HJ (1999) Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ Microbiol 65:795 801.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 795-801
-
-
Van Hannen, E.J.1
Zwart, G.2
Van Agterveld, M.P.3
Gons, H.J.4
Ebert, J.5
Laanbroek, H.J.6
-
36
-
-
1342289956
-
Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages
-
Warnecke F, Amann R Pernthaler J (2004) Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ Microbiol 6:242 253.
-
(2004)
Environ Microbiol
, vol.6
, pp. 242-253
-
-
Warnecke, F.1
Amann, R.2
Pernthaler, J.3
-
37
-
-
0038315469
-
Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier
-
Zhu F, Wang S Zhou P (2003) Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier. Int J Syst Evol Microbiol 53:853 857.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 853-857
-
-
Zhu, F.1
Wang, S.2
Zhou, P.3
-
38
-
-
0032432257
-
Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria
-
Zwart G, Hiorns WD, Methé BA, van Agterveld MP, Huismans R, Nold SC, Zehr JP Laanbroek HJ (1998) Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst Appl Microbiol 21:546 556.
-
(1998)
Syst Appl Microbiol
, vol.21
, pp. 546-556
-
-
Zwart, G.1
Hiorns, W.D.2
Methé, B.A.3
Van Agterveld, M.P.4
Huismans, R.5
Nold, S.C.6
Zehr, J.P.7
Laanbroek, H.J.8
-
39
-
-
0037178021
-
Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
-
Zwart G, Crump BC, Agterveld M, Hagen F Han SK (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28:141 155.
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 141-155
-
-
Zwart, G.1
Crump, B.C.2
Agterveld, M.3
Hagen, F.4
Han, S.K.5
|