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Volumn 61, Issue 1, 2007, Pages 85-96

Bacterial community composition of a shallow hypertrophic freshwater lake in China, revealed by 16S rRNA gene sequences

Author keywords

16S rRNA; Bacterial community; Clone library; Hypereutrophic freshwater

Indexed keywords

RIBOSOME RNA;

EID: 34250001696     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2007.00326.x     Document Type: Article
Times cited : (124)

References (39)
  • 2
    • 0000450150 scopus 로고    scopus 로고
    • Bacterial diversity in an Arctic lake: A freshwater SAR11 cluster
    • Bahr M, Hobbie JE Sogin ML (1996) Bacterial diversity in an Arctic lake: a freshwater SAR11 cluster. Aquat Microb Ecol 11:271 277.
    • (1996) Aquat Microb Ecol , vol.11 , pp. 271-277
    • Bahr, M.1    Hobbie, J.E.2    Sogin, M.L.3
  • 3
    • 0001463548 scopus 로고
    • Nonparametric estimation of the number of classes in a population
    • Chao A (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11:265 270.
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 5
    • 10044278979 scopus 로고    scopus 로고
    • Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes
    • Eiler A Bertilsson S (2004) Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 6:1228 1243.
    • (2004) Environ Microbiol , vol.6 , pp. 1228-1243
    • Eiler, A.1    Bertilsson, S.2
  • 6
    • 0035977793 scopus 로고    scopus 로고
    • Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
    • Fandino LB, Riemann L, Steward GF, Long RA Azam F (2001) Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat Microb Ecol 23:119 130.
    • (2001) Aquat Microb Ecol , vol.23 , pp. 119-130
    • Fandino, L.B.1    Riemann, L.2    Steward, G.F.3    Long, R.A.4    Azam, F.5
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368 376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 0033754255 scopus 로고    scopus 로고
    • Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria
    • Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 66:5053 5065.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5053-5065
    • Glöckner, F.O.1    Zaichikov, E.2    Belkova, N.3    Denissova, L.4    Pernthaler, J.5    Pernthaler, A.6    Amann, R.7
  • 9
    • 0345269205 scopus 로고    scopus 로고
    • Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia
    • Hahn MW, Lunsdorf H, Wu Q, Schauer M, Höfle MG, Boenigk J Stadler P (2003) Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia. Appl Environ Microbiol 69:1442 1451.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1442-1451
    • Hahn, M.W.1    Lunsdorf, H.2    Wu, Q.3    Schauer, M.4    Höfle, M.G.5    Boenigk, J.6    Stadler, P.7
  • 11
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences
    • Hiorns WD, Methé BA, Nierzwicki-Bauer SA Zehr JP (1997) Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences. Appl Environ Microbiol 63:2957 2960.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methé, B.A.2    Nierzwicki-Bauer, S.A.3    Zehr, J.P.4
  • 12
    • 0345104351 scopus 로고    scopus 로고
    • Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis
    • Höfle MG, Haas H Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164 3174.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3164-3174
    • Höfle, M.G.1    Haas, H.2    Dominik, K.3
  • 13
    • 34250027091 scopus 로고    scopus 로고
    • Kowalchuk, G.A., de Bruijn, F.J., Head, I.M., Akkermans, A.D. van Elsas, J.D., eds), pp. Academic Publisher, Kluwer.
    • Hughes J Bohannan B (2004) Application of Ecological Diversity Statistics in Microbial Ecology (Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans AD van Elsas JD, eds), pp. 1321 1344. Academic Publisher, Kluwer.
    • (2004) Application of Ecological Diversity Statistics in Microbial Ecology , pp. 1321-1344
    • Hughes, J.1    Bohannan, B.2
  • 14
    • 0034933418 scopus 로고    scopus 로고
    • Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton
    • Jaspers E, Nauhaus K, Cypionka H Overmann J (2001) Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol Ecol 36:153 164.
    • (2001) FEMS Microbiol Ecol , vol.36 , pp. 153-164
    • Jaspers, E.1    Nauhaus, K.2    Cypionka, H.3    Overmann, J.4
  • 15
    • 0028117074 scopus 로고
    • Use of fluorochromes for direct enumeration of total bacteria in environmental samples: Past and present
    • Kepner R Pratt JR (1994) Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present. Microbiol Rev 58:603 615.
    • (1994) Microbiol Rev , vol.58 , pp. 603-615
    • Kepner, R.1    Pratt, J.R.2
  • 16
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • Kuhner MK Felsenstein J (1994) A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 11:459 468.
    • (1994) Mol Biol Evol , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 17
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150 163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 18
    • 33947196711 scopus 로고    scopus 로고
    • Analysis of water environmental change in Taihu watershed
    • Lin ZX (2002) Analysis of water environmental change in Taihu watershed. J Lake Sci 14:97 103.
    • (2002) J Lake Sci , vol.14 , pp. 97-103
    • Lin, Z.X.1
  • 20
    • 0031838852 scopus 로고    scopus 로고
    • Contrasts between marine and freshwater bacterial community composition: Analyses of communities in Lake George and six other Adirondack lakes
    • Methé BA, Hiorns WD Zehr JP (1998) Contrasts between marine and freshwater bacterial community composition: analyses of communities in Lake George and six other Adirondack lakes. Limnol Oceanogr 43:368 374.
    • (1998) Limnol Oceanogr , vol.43 , pp. 368-374
    • Methé, B.A.1    Hiorns, W.D.2    Zehr, J.P.3
  • 21
    • 34249994181 scopus 로고
    • Balows, A., Trüper, H.G., Dworkin, M., Harder, W. Schleifer, K-H, eds), pp. Springer, New York.
    • Mulder EG Deinema MH (1992) The Sheathed Bacteria (Balows A, Trüper HG, Dworkin M, Harder W Schleifer K-H, eds), pp. 2612 2624. Springer, New York.
    • (1992) The Sheathed Bacteria , pp. 2612-2624
    • Mulder, E.G.1    Deinema, M.H.2
  • 22
    • 0036794822 scopus 로고    scopus 로고
    • Relationship between bacterial community composition and bottom-up versus top-down variables in four eutrophic shallow lakes
    • Muylaert K, Van der Gucht K, Vloemans N, De Meester L, Gillis M Vyverman W (2002) Relationship between bacterial community composition and bottom-up versus top-down variables in four eutrophic shallow lakes. Appl Environ Microbiol 68:4740 4750.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 4740-4750
    • Muylaert, K.1    Van Der Gucht, K.2    Vloemans, N.3    De Meester, L.4    Gillis, M.5    Vyverman, W.6
  • 24
    • 0343340084 scopus 로고    scopus 로고
    • Hydrodynamics of Lake Taihu, China
    • Qin BQ (1999) Hydrodynamics of Lake Taihu, China. AMBIO 28:669 673.
    • (1999) AMBIO , vol.28 , pp. 669-673
    • Qin, B.Q.1
  • 25
    • 0033951021 scopus 로고    scopus 로고
    • Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
    • Riemann L, Steward GF Azam F (2000) Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl Environ Microbiol 66:578 587.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 578-587
    • Riemann, L.1    Steward, G.F.2    Azam, F.3
  • 28
    • 0036795083 scopus 로고    scopus 로고
    • Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
    • Sekiguchi H, Watanabe M, Nakahara T, Xu B Uchiyama H (2002b) Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl Environ Microbiol 68:5142 5150.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5142-5150
    • Sekiguchi, H.1    Watanabe, M.2    Nakahara, T.3    Xu, B.4    Uchiyama, H.5
  • 29
    • 0032152197 scopus 로고    scopus 로고
    • Species diversity of picoplankton from Lake Baikal by comparative analysis of 5′-terminal segments of 16S rRNA genes
    • Semenova EA Kuznedelov KD (1998) Species diversity of picoplankton from Lake Baikal by comparative analysis of 5′-terminal segments of 16S rRNA genes. Mol Biol 32:895 901.
    • (1998) Mol Biol , vol.32 , pp. 895-901
    • Semenova, E.A.1    Kuznedelov, K.D.2
  • 31
    • 0036781913 scopus 로고    scopus 로고
    • Phylogenetic diversity of winter bacterioplankton of eutrophic siberian reservoirs as revealed by 16S rRNA gene sequence
    • Trusova MY Gladyshev MI (2002) Phylogenetic diversity of winter bacterioplankton of eutrophic siberian reservoirs as revealed by 16S rRNA gene sequence. Microb Ecol 44:252 259.
    • (2002) Microb Ecol , vol.44 , pp. 252-259
    • Trusova, M.Y.1    Gladyshev, M.I.2
  • 33
    • 0035544053 scopus 로고    scopus 로고
    • Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes
    • Van Der Gucht K, Sabbe K, De Meester L, Vloemans N, Zwart G, Gillis M Vyverman W (2001) Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. Environ Microbiol 3:680 690.
    • (2001) Environ Microbiol , vol.3 , pp. 680-690
    • Van Der Gucht, K.1    Sabbe, K.2    De Meester, L.3    Vloemans, N.4    Zwart, G.5    Gillis, M.6    Vyverman, W.7
  • 35
    • 0032975678 scopus 로고    scopus 로고
    • Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses
    • Van Hannen EJ, Zwart G, van Agterveld MP, Gons HJ, Ebert J Laanbroek HJ (1999) Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ Microbiol 65:795 801.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 795-801
    • Van Hannen, E.J.1    Zwart, G.2    Van Agterveld, M.P.3    Gons, H.J.4    Ebert, J.5    Laanbroek, H.J.6
  • 36
    • 1342289956 scopus 로고    scopus 로고
    • Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages
    • Warnecke F, Amann R Pernthaler J (2004) Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ Microbiol 6:242 253.
    • (2004) Environ Microbiol , vol.6 , pp. 242-253
    • Warnecke, F.1    Amann, R.2    Pernthaler, J.3
  • 37
    • 0038315469 scopus 로고    scopus 로고
    • Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier
    • Zhu F, Wang S Zhou P (2003) Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier. Int J Syst Evol Microbiol 53:853 857.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 853-857
    • Zhu, F.1    Wang, S.2    Zhou, P.3
  • 38
    • 0032432257 scopus 로고    scopus 로고
    • Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria
    • Zwart G, Hiorns WD, Methé BA, van Agterveld MP, Huismans R, Nold SC, Zehr JP Laanbroek HJ (1998) Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst Appl Microbiol 21:546 556.
    • (1998) Syst Appl Microbiol , vol.21 , pp. 546-556
    • Zwart, G.1    Hiorns, W.D.2    Methé, B.A.3    Van Agterveld, M.P.4    Huismans, R.5    Nold, S.C.6    Zehr, J.P.7    Laanbroek, H.J.8
  • 39
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart G, Crump BC, Agterveld M, Hagen F Han SK (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 28:141 155.
    • (2002) Aquat Microb Ecol , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Agterveld, M.3    Hagen, F.4    Han, S.K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.