메뉴 건너뛰기




Volumn 396, Issue 1, 2010, Pages 230-244

Stochastic Switching in Gene Networks Can Occur by a Single-Molecule Event or Many Molecular Steps

Author keywords

expression noise; gene networks; single molecule; stochastic switching; transcription factors

Indexed keywords

ARTICLE; BACTERIAL METABOLISM; CARBOHYDRATE METABOLISM; CONCEPTUAL FRAMEWORK; DNA BINDING; ESCHERICHIA COLI; GENE REGULATORY NETWORK; GENE SWITCHING; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; STOCHASTIC MODEL;

EID: 74649084225     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.11.035     Document Type: Article
Times cited : (22)

References (44)
  • 3
    • 13444283630 scopus 로고    scopus 로고
    • Interaction network containing conserved and essential protein complexes in Escherichia coli
    • Butland G., Peregrín-Alvarez J.M., Li J., Yang W., Yang X., Canadien V., et al. Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 (2005) 531-537
    • (2005) Nature , vol.433 , pp. 531-537
    • Butland, G.1    Peregrín-Alvarez, J.M.2    Li, J.3    Yang, W.4    Yang, X.5    Canadien, V.6
  • 4
    • 0001389945 scopus 로고
    • Enzyme induction as an all-or-none phenomenon
    • Novick A., and Weiner M. Enzyme induction as an all-or-none phenomenon. Proc. Natl Acad. Sci. USA 43 (1957) 553-566
    • (1957) Proc. Natl Acad. Sci. USA , vol.43 , pp. 553-566
    • Novick, A.1    Weiner, M.2
  • 5
    • 0019840794 scopus 로고
    • Phase variation of type 1 fimbriae in Escherichia coli is under transcriptional control
    • Eisenstein B.I. Phase variation of type 1 fimbriae in Escherichia coli is under transcriptional control. Science 214 (1981) 337-339
    • (1981) Science , vol.214 , pp. 337-339
    • Eisenstein, B.I.1
  • 6
    • 0005165816 scopus 로고
    • Biosynthetic latency in early stages of deoxyribonucleic acid transformation in Bacillus subtilis
    • Nester E.W., and Stocker B.A.D. Biosynthetic latency in early stages of deoxyribonucleic acid transformation in Bacillus subtilis. J. Bacteriol. 86 (1963) 785-796
    • (1963) J. Bacteriol. , vol.86 , pp. 785-796
    • Nester, E.W.1    Stocker, B.A.D.2
  • 7
    • 0033617522 scopus 로고    scopus 로고
    • Notch signaling: cell fate control and signal integration in development
    • Artavanis-Tsakonas S., Rand M.D., and Lake R.J. Notch signaling: cell fate control and signal integration in development. Science 284 (1999) 770-776
    • (1999) Science , vol.284 , pp. 770-776
    • Artavanis-Tsakonas, S.1    Rand, M.D.2    Lake, R.J.3
  • 8
    • 0034712109 scopus 로고    scopus 로고
    • Out of Eden: stem cells and their niches
    • Watt F.M., and Hogan B.L.M. Out of Eden: stem cells and their niches. Science 287 (2000) 1427-1430
    • (2000) Science , vol.287 , pp. 1427-1430
    • Watt, F.M.1    Hogan, B.L.M.2
  • 9
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • Gardner T., Cantor C.R., and Collins J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 403 (2000) 339-342
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.1    Cantor, C.R.2    Collins, J.J.3
  • 12
    • 34547604468 scopus 로고    scopus 로고
    • Noise in gene expression determines cell fate in Bacillus subtilis
    • Maamar H., Raj A., and Dubnau D. Noise in gene expression determines cell fate in Bacillus subtilis. Science 317 (2007) 526-529
    • (2007) Science , vol.317 , pp. 526-529
    • Maamar, H.1    Raj, A.2    Dubnau, D.3
  • 13
    • 54249083606 scopus 로고    scopus 로고
    • A stochastic single-molecule event triggers phenotype switching of a bacterial cell
    • Choi P.J., Cai L., Frieda K., and Xie X.S. A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322 (2008) 442-446
    • (2008) Science , vol.322 , pp. 442-446
    • Choi, P.J.1    Cai, L.2    Frieda, K.3    Xie, X.S.4
  • 14
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation, and tolerance of intracellular noise
    • Rao C.V., Wolf D.M., and Arkin A.P. Control, exploitation, and tolerance of intracellular noise. Nature 420 (2002) 231-237
    • (2002) Nature , vol.420 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 15
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: origins, consequences, and control
    • Raser J.M., and O' Shea E.K. Noise in gene expression: origins, consequences, and control. Science 309 (2005) 2010-2013
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O' Shea, E.K.2
  • 16
    • 33748058888 scopus 로고    scopus 로고
    • Bistability in bacteria
    • Dubnau D., and Losick R. Bistability in bacteria. Mol. Microbiol. 61 (2006) 562-572
    • (2006) Mol. Microbiol. , vol.61 , pp. 562-572
    • Dubnau, D.1    Losick, R.2
  • 17
  • 18
    • 2942718723 scopus 로고    scopus 로고
    • Control of stochasticity in eukaryotic gene expression
    • Raser J.M., and O' Shea E.K. Control of stochasticity in eukaryotic gene expression. Science 304 (2004) 1811-1814
    • (2004) Science , vol.304 , pp. 1811-1814
    • Raser, J.M.1    O' Shea, E.K.2
  • 19
    • 28944434119 scopus 로고    scopus 로고
    • Real-time kinetics of gene activity in individual bacteria
    • Golding I., Paulsson J., Zawilski S.M., and Cox E.C. Real-time kinetics of gene activity in individual bacteria. Cell 123 (2005) 1025-1036
    • (2005) Cell , vol.123 , pp. 1025-1036
    • Golding, I.1    Paulsson, J.2    Zawilski, S.M.3    Cox, E.C.4
  • 22
    • 38849117209 scopus 로고    scopus 로고
    • Eliminating fast reactions in stochastic simulations of biochemical networks: a bistable genetic switch
    • Morelli M.J., Allen R.J., Tanase-Nicola S., and ten Wolde P.R. Eliminating fast reactions in stochastic simulations of biochemical networks: a bistable genetic switch. J. Chem. Phys. 128 (2008) 045105
    • (2008) J. Chem. Phys. , vol.128 , pp. 045105
    • Morelli, M.J.1    Allen, R.J.2    Tanase-Nicola, S.3    ten Wolde, P.R.4
  • 23
    • 4243911221 scopus 로고    scopus 로고
    • Epigenetics as a first exit problem
    • Aurrell E., and Sneppen K. Epigenetics as a first exit problem. Phys. Rev. Lett. 88 (2002) 048101
    • (2002) Phys. Rev. Lett. , vol.88 , pp. 048101
    • Aurrell, E.1    Sneppen, K.2
  • 24
    • 47649111578 scopus 로고    scopus 로고
    • Exponential sensitivity of noise-driven switching in genetic networks
    • Mehta P., Mukhopadphyay R., and Wingreen N.S. Exponential sensitivity of noise-driven switching in genetic networks. Phys. Biol. 5 (2008) 026005
    • (2008) Phys. Biol. , vol.5 , pp. 026005
    • Mehta, P.1    Mukhopadphyay, R.2    Wingreen, N.S.3
  • 25
    • 0033517148 scopus 로고    scopus 로고
    • Robustness of a gene regulatory circuit
    • Little J.W., Shepley D.P., and Wert D.W. Robustness of a gene regulatory circuit. EMBO J. 18 (1999) 4299-4307
    • (1999) EMBO J. , vol.18 , pp. 4299-4307
    • Little, J.W.1    Shepley, D.P.2    Wert, D.W.3
  • 26
    • 0000478070 scopus 로고
    • Turnover of protein in growing and non-growing populations of Escherichia coli
    • Mandelstam J. Turnover of protein in growing and non-growing populations of Escherichia coli. Biochem. J. 69 (1958) 110-119
    • (1958) Biochem. J. , vol.69 , pp. 110-119
    • Mandelstam, J.1
  • 27
    • 33750247101 scopus 로고    scopus 로고
    • Linking stochastic dynamics to population distributions: an analytical framework of gene expression
    • Friedman N., Cai L., and Xie X.S. Linking stochastic dynamics to population distributions: an analytical framework of gene expression. Phys. Rev. Lett. 97 (2006) 168302
    • (2006) Phys. Rev. Lett. , vol.97 , pp. 168302
    • Friedman, N.1    Cai, L.2    Xie, X.S.3
  • 28
    • 34249932435 scopus 로고    scopus 로고
    • Probing transcription factor dynamics at the single-molecule level in a living cell
    • Elf J., and Li G.W. Probing transcription factor dynamics at the single-molecule level in a living cell. Science 316 (2007) 1191-1194
    • (2007) Science , vol.316 , pp. 1191-1194
    • Elf, J.1    Li, G.W.2
  • 29
    • 0001973959 scopus 로고
    • On diffusion-controlled dissociation
    • Berg O.G. On diffusion-controlled dissociation. Chem. Phys. 31 (1978) 47-57
    • (1978) Chem. Phys. , vol.31 , pp. 47-57
    • Berg, O.G.1
  • 30
    • 0035193294 scopus 로고    scopus 로고
    • Stochasticity in transcription regulation: origins, consequences, and mathematical representations
    • Kepler T.B., and Elston T.C. Stochasticity in transcription regulation: origins, consequences, and mathematical representations. Biophys. J. 81 (2001) 3116-3136
    • (2001) Biophys. J. , vol.81 , pp. 3116-3136
    • Kepler, T.B.1    Elston, T.C.2
  • 31
    • 20344389483 scopus 로고    scopus 로고
    • Models of stochastic gene expression
    • Paulsson J. Models of stochastic gene expression. Phys. Life Rev. 2 (2005) 157-175
    • (2005) Phys. Life Rev. , vol.2 , pp. 157-175
    • Paulsson, J.1
  • 34
  • 35
    • 33645033645 scopus 로고    scopus 로고
    • Probing gene expression in live cells, one protein molecule at a time
    • Yu J., Xiao J., Ren X., Lao K., and Xie X.S. Probing gene expression in live cells, one protein molecule at a time. Science 311 (2006) 1600-1603
    • (2006) Science , vol.311 , pp. 1600-1603
    • Yu, J.1    Xiao, J.2    Ren, X.3    Lao, K.4    Xie, X.S.5
  • 36
    • 33645027986 scopus 로고    scopus 로고
    • Stochastic protein expression in individual cells at the single molecule level
    • Cai L., Friedman N., and Xie X.S. Stochastic protein expression in individual cells at the single molecule level. Nature 440 (2006) 358-362
    • (2006) Nature , vol.440 , pp. 358-362
    • Cai, L.1    Friedman, N.2    Xie, X.S.3
  • 37
    • 25444489027 scopus 로고    scopus 로고
    • Phenotypic diversity, population growth, and information in fluctuating environments
    • Kussell E., and Leibler S. Phenotypic diversity, population growth, and information in fluctuating environments. Science 309 (2005) 2075-2078
    • (2005) Science , vol.309 , pp. 2075-2078
    • Kussell, E.1    Leibler, S.2
  • 38
    • 14744282987 scopus 로고    scopus 로고
    • Diversity in times of adversity: probabilistic strategies in microbial survival games
    • Wolf D.W., Vazirani V.V., and Arkin A.P. Diversity in times of adversity: probabilistic strategies in microbial survival games. J. Theor. Biol. 234 (2005) 227-253
    • (2005) J. Theor. Biol. , vol.234 , pp. 227-253
    • Wolf, D.W.1    Vazirani, V.V.2    Arkin, A.P.3
  • 39
    • 23144432213 scopus 로고    scopus 로고
    • Optimality and evolutionary tuning of the expression level of a protein
    • Dekel E., and Alon U. Optimality and evolutionary tuning of the expression level of a protein. Nature 436 (2005) 588-592
    • (2005) Nature , vol.436 , pp. 588-592
    • Dekel, E.1    Alon, U.2
  • 40
    • 56249130793 scopus 로고    scopus 로고
    • Analytical distributions for stochastic gene expression
    • Shahrezaei V., and Swain P. Analytical distributions for stochastic gene expression. Proc. Natl Acad. Sci. USA 105 (2008) 17251-17256
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 17251-17256
    • Shahrezaei, V.1    Swain, P.2
  • 41
    • 42449140138 scopus 로고    scopus 로고
    • Transcriptional control of noise in gene expression
    • Sanchez A., and Kondev J. Transcriptional control of noise in gene expression. Proc. Natl Acad. Sci. USA 105 (2008) 5081-5086
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 5081-5086
    • Sanchez, A.1    Kondev, J.2
  • 42
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81 (1977) 2340-2361
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 43
    • 0019887628 scopus 로고
    • Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
    • Berg O.G., Winter R.B., and von Hippel P.H. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. Biochemistry 21 (1981) 6929-6948
    • (1981) Biochemistry , vol.21 , pp. 6929-6948
    • Berg, O.G.1    Winter, R.B.2    von Hippel, P.H.3
  • 44
    • 44349116852 scopus 로고    scopus 로고
    • The transition from transcriptional initiation to elongation
    • Wade J.T., and Struhl K. The transition from transcriptional initiation to elongation. Curr. Opin. Genet. Dev. 18 (2008) 130-136
    • (2008) Curr. Opin. Genet. Dev. , vol.18 , pp. 130-136
    • Wade, J.T.1    Struhl, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.