-
1
-
-
10444285332
-
Multidrug resistance in yeast Candida
-
Prasad R, Kapoor K (2005) Multidrug resistance in yeast Candida. Int Rev Cytol 242: 215-248.
-
(2005)
Int Rev Cytol
, vol.242
, pp. 215-248
-
-
Prasad, R.1
Kapoor, K.2
-
2
-
-
27544514993
-
Complete inventory of ABC proteins in human pathogenic yeast, Candida albicans
-
Gaur M, Choudhury D, Prasad R (2005) Complete inventory of ABC proteins in human pathogenic yeast, Candida albicans. J Mol Microbiol Biotechnol 9: 3-15.
-
(2005)
J Mol Microbiol Biotechnol
, vol.9
, pp. 3-15
-
-
Gaur, M.1
Choudhury, D.2
Prasad, R.3
-
3
-
-
63149167412
-
MFS transportome of the human pathogenic yeast Candida albicans
-
Gaur M, Puri N, Manoharlal R, Rai V, Mukhopadhayay G, et al. (2008) MFS transportome of the human pathogenic yeast Candida albicans. BMC Genomics 9: 579.
-
(2008)
BMC Genomics
, vol.9
, pp. 579
-
-
Gaur, M.1
Puri, N.2
Manoharlal, R.3
Rai, V.4
Mukhopadhayay, G.5
-
4
-
-
0037085683
-
ABC transporters Cdr1p, Cdr2p and Cdr3p of a human pathogen Candida albicans are general phospholipid translocators
-
Smriti, Krishnamurthy S, Dixit BL, Gupta CM, Milewski S, et al. (2002) ABC transporters Cdr1p, Cdr2p and Cdr3p of a human pathogen Candida albicans are general phospholipid translocators. Yeast 19: 303-318.
-
(2002)
Yeast
, vol.19
, pp. 303-318
-
-
Smriti1
Krishnamurthy, S.2
Dixit, B.L.3
Gupta, C.M.4
Milewski, S.5
-
5
-
-
0345269084
-
The multidrug transporters belonging to major facilitator superfamily in Mycobacterium tuberculosis
-
De RE, Arrigo P, Bellinzoni M, Silva PA, Martin C, et al. (2002) The multidrug transporters belonging to major facilitator superfamily in Mycobacterium tuberculosis. Mol Med 8: 714-724.
-
(2002)
Mol Med
, vol.8
, pp. 714-724
-
-
RE, D.1
Arrigo, P.2
Bellinzoni, M.3
Silva, P.A.4
Martin, C.5
-
6
-
-
0034050363
-
+) antiporter from Staphylococcus aureus: Mutagenesis and functional analysis of motif C
-
+) antiporter from Staphylococcus aureus: mutagenesis and functional analysis of motif C. J Bacteriol 182: 1492-1498.
-
(2000)
J Bacteriol
, vol.182
, pp. 1492-1498
-
-
Ginn, S.L.1
Brown, M.H.2
Skurray, R.A.3
-
8
-
-
53849119555
-
Ins and outs of major facilitator superfamily antiporters
-
Law CJ, Maloney PC, Wang DN (2008) Ins and outs of major facilitator superfamily antiporters. Annu Rev Microbiol 62: 289-305.
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 289-305
-
-
Law, C.J.1
Maloney, P.C.2
Wang, D.N.3
-
9
-
-
0041353145
-
Structure and mechanism of the lactose permease of Escherichia coli
-
Abramson J, Smirnova I, Kasho V, Verner G, Kaback HR, et al. (2003) Structure and mechanism of the lactose permease of Escherichia coli. Science 301: 610-615.
-
(2003)
Science
, vol.301
, pp. 610-615
-
-
Abramson, J.1
Smirnova, I.2
Kasho, V.3
Verner, G.4
Kaback, H.R.5
-
10
-
-
0041489951
-
Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli
-
Huang Y, Lemieux MJ, Song J, Auer M, Wang DN (2003) Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli. Science 301: 616-620.
-
(2003)
Science
, vol.301
, pp. 616-620
-
-
Huang, Y.1
Lemieux, M.J.2
Song, J.3
Auer, M.4
Wang, D.N.5
-
11
-
-
33646445156
-
Structure of the multidrug transporter EmrD from Escherichia coli
-
Yin Y, He X, Szewczyk P, Nguyen T, Chang G (2006) Structure of the multidrug transporter EmrD from Escherichia coli. Science 312: 741-744.
-
(2006)
Science
, vol.312
, pp. 741-744
-
-
Yin, Y.1
He, X.2
Szewczyk, P.3
Nguyen, T.4
Chang, G.5
-
12
-
-
20844454949
-
Experimental tests of a homology model for OxlT, the oxalate transporter of Oxalobacter formigenes
-
Yang Q, Wang X, Ye L, Mentrikoski M, Mohammadi E, et al. (2005) Experimental tests of a homology model for OxlT, the oxalate transporter of Oxalobacter formigenes. Proc Natl Acad Sci U S A 102: 8513-8518.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 8513-8518
-
-
Yang, Q.1
Wang, X.2
Ye, L.3
Mentrikoski, M.4
Mohammadi, E.5
-
15
-
-
0034063860
-
The transmembrane domain 10 of the yeast Pdr5p ABC antifungal efflux pump determines both substrate specificity and inhibitor susceptibility
-
Egner R, Bauer BE, Kuchler K (2000) The transmembrane domain 10 of the yeast Pdr5p ABC antifungal efflux pump determines both substrate specificity and inhibitor susceptibility. Mol Microbiol 35: 1255-1263.
-
(2000)
Mol Microbiol
, vol.35
, pp. 1255-1263
-
-
Egner, R.1
Bauer, B.E.2
Kuchler, K.3
-
16
-
-
33746239676
-
The calcium channel blockers, 1,4-dihydropyridines, are substrates of the multidrug resistance-linked ABC drug transporter, ABCG2
-
Shukla S, Robey RW, Bates SE, Ambudkar SV (2006) The calcium channel blockers, 1,4-dihydropyridines, are substrates of the multidrug resistance-linked ABC drug transporter, ABCG2. Biochemistry 45: 8940-8951.
-
(2006)
Biochemistry
, vol.45
, pp. 8940-8951
-
-
Shukla, S.1
Robey, R.W.2
Bates, S.E.3
Ambudkar, S.V.4
-
17
-
-
17844373518
-
Mutational analysis of the yeast multidrug resistance ABC transporter Pdr5p with altered drug specificity
-
Tutulan-Cunita AC, Mikoshi M, Mizunuma M, Hirata D, Miyakawa T (2005) Mutational analysis of the yeast multidrug resistance ABC transporter Pdr5p with altered drug specificity. Genes Cells 10: 409-420.
-
(2005)
Genes Cells
, vol.10
, pp. 409-420
-
-
Tutulan-Cunita, A.C.1
Mikoshi, M.2
Mizunuma, M.3
Hirata, D.4
Miyakawa, T.5
-
18
-
-
42449109037
-
A mutation of the H-loop selectively affects rhodamine transport by the yeast multidrug ABC transporter Pdr5
-
Ernst R, Kueppers P, Klein CM, Schwarzmueller T, Kuchler K, et al. (2008) A mutation of the H-loop selectively affects rhodamine transport by the yeast multidrug ABC transporter Pdr5. Proc Natl Acad Sci U S A 105: 5069-5074.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 5069-5074
-
-
Ernst, R.1
Kueppers, P.2
Klein, C.M.3
Schwarzmueller, T.4
Kuchler, K.5
-
19
-
-
24044514014
-
Alanine scanning of transmembrane helix 11 of Cdr1p ABC antifungal efflux pump of Candida albicans: Identification of amino acid residues critical for drug efflux
-
Saini P, Prasad T, Gaur NA, Shukla S, Jha S, et al. (2005) Alanine scanning of transmembrane helix 11 of Cdr1p ABC antifungal efflux pump of Candida albicans: identification of amino acid residues critical for drug efflux. J Antimicrob Chemother 56: 77-86.
-
(2005)
J Antimicrob Chemother
, vol.56
, pp. 77-86
-
-
Saini, P.1
Prasad, T.2
Gaur, N.A.3
Shukla, S.4
Jha, S.5
-
20
-
-
68749120814
-
The amino acid residues of transmembrane helix 5 of multidrug resistance protein CaCdr1p of Candida albicans are involved in substrate specificity and drug transport
-
Puri N, Gaur M, Sharma M, Shukla S, Ambudkar SV, et al. (2009) The amino acid residues of transmembrane helix 5 of multidrug resistance protein CaCdr1p of Candida albicans are involved in substrate specificity and drug transport. Biochim Biophys Acta 1788: 1752-1761.
-
(2009)
Biochim Biophys Acta
, vol.1788
, pp. 1752-1761
-
-
Puri, N.1
Gaur, M.2
Sharma, M.3
Shukla, S.4
Ambudkar, S.V.5
-
21
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh A, Larsson B, von HG, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von, H.G.3
Sonnhammer, E.L.4
-
22
-
-
0033670313
-
PHAT: A transmembrane-specific substitution matrix
-
Ng PC, Henikoff JG, Henikoff S (2000) PHAT: a transmembrane-specific substitution matrix. Bioinformatics 16: 760-766.
-
(2000)
Bioinformatics
, vol.16
, pp. 760-766
-
-
Ng, P.C.1
Henikoff, J.G.2
Henikoff, S.3
-
23
-
-
0036681416
-
Scoring residue conservation
-
Valdar WS (2002) Scoring residue conservation. Proteins 48: 227-241.
-
(2002)
Proteins
, vol.48
, pp. 227-241
-
-
Valdar, W.S.1
-
25
-
-
0031178951
-
The mathematical theory of communication. 1963
-
Shannon CE (1997) The mathematical theory of communication. 1963. MD Comput 14: 306-317.
-
(1997)
MD Comput
, vol.14
, pp. 306-317
-
-
Shannon, C.E.1
-
26
-
-
33748505263
-
Incorporating background frequency improves entropy-based residue conservation measures
-
Wang K, Samudrala R (2006) Incorporating background frequency improves entropy-based residue conservation measures. BMC Bioinformatics 7: 385.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 385
-
-
Wang, K.1
Samudrala, R.2
-
27
-
-
0034644783
-
Analysis and prediction of functional subtypes from protein sequence alignments
-
Hannenhalli SS, Russell RB (2000) Analysis and prediction of functional subtypes from protein sequence alignments. J Mol Biol 303: 61-76.
-
(2000)
J Mol Biol
, vol.303
, pp. 61-76
-
-
Hannenhalli, S.S.1
Russell, R.B.2
-
28
-
-
34247182735
-
HMM-ModE improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences
-
Srivastava PK, Desai DK, Nandi S, Lynn AM (2007) HMM-ModE improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences. BMC Bioinformatics 8: 104.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 104
-
-
Srivastava, P.K.1
Desai, D.K.2
Nandi, S.3
Lynn, A.M.4
-
29
-
-
44949137643
-
Determinants of protein function revealed by combinatorial entropy optimization
-
Reva B, Antipin Y, Sander C (2007) Determinants of protein function revealed by combinatorial entropy optimization. Genome Biol 8: R232.
-
(2007)
Genome Biol
, vol.8
-
-
Reva, B.1
Antipin, Y.2
Sander, C.3
-
30
-
-
0037447059
-
Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases
-
Li L, Shakhnovich EI, Mirny LA (2003) Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases. Proc Natl Acad Sci U S A 100: 4463-4468.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 4463-4468
-
-
Li, L.1
Shakhnovich, E.I.2
Mirny, L.A.3
-
31
-
-
40049091146
-
Prediction of protein functional residues from sequence by probability density estimation
-
Fischer JD, Mayer CE, Soding J (2008) Prediction of protein functional residues from sequence by probability density estimation. Bioinformatics 24: 613-620.
-
(2008)
Bioinformatics
, vol.24
, pp. 613-620
-
-
Fischer, J.D.1
Mayer, C.E.2
Soding, J.3
-
32
-
-
46249099576
-
Characterization and prediction of residues determining protein functional specificity
-
Capra JA, Singh M (2008) Characterization and prediction of residues determining protein functional specificity. Bioinformatics 24: 1473-1480.
-
(2008)
Bioinformatics
, vol.24
, pp. 1473-1480
-
-
Capra, J.A.1
Singh, M.2
-
33
-
-
0032524635
-
ATPase and multidrug transport activities of the overexpressed yeast ABC protein Yor1p
-
Decottignies A, Grant AM, Nichols JW, De Wet H, McIntosh DB, et al. (1998) ATPase and multidrug transport activities of the overexpressed yeast ABC protein Yor1p. J Biol Chem 273: 12612-12622.
-
(1998)
J Biol Chem
, vol.273
, pp. 12612-12622
-
-
Decottignies, A.1
Grant, A.M.2
Nichols, J.W.3
De Wet, H.4
McIntosh, D.B.5
-
34
-
-
0035185602
-
Functional expression of Candida albicans drug efflux pump Cdr1p in a Saccharomyces cerevisiae strain deficient in membrane transporters
-
Nakamura K, Niimi M, Niimi K, Holmes AR, Yates JE, et al. (2001) Functional expression of Candida albicans drug efflux pump Cdr1p in a Saccharomyces cerevisiae strain deficient in membrane transporters. Antimicrob Agents Chemother 45: 3366-3374.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, pp. 3366-3374
-
-
Nakamura, K.1
Niimi, M.2
Niimi, K.3
Holmes, A.R.4
Yates, J.E.5
-
36
-
-
39149144057
-
PRALINETM: A strategy for improved multiple alignment of transmembrane proteins
-
Pirovano W, Feenstra KA, Heringa J (2008) PRALINETM: a strategy for improved multiple alignment of transmembrane proteins. Bioinformatics 24: 492-497.
-
(2008)
Bioinformatics
, vol.24
, pp. 492-497
-
-
Pirovano, W.1
Feenstra, K.A.2
Heringa, J.3
-
37
-
-
0032864202
-
Conserved cytoplasmic loops are important for both the transport and chemotaxis functions of PcaK, a protein from Pseudomonas putida with 12 membrane-spanning regions
-
Ditty JL, Harwood CS (1999) Conserved cytoplasmic loops are important for both the transport and chemotaxis functions of PcaK, a protein from Pseudomonas putida with 12 membrane-spanning regions. J Bacteriol 181: 5068-5074.
-
(1999)
J Bacteriol
, vol.181
, pp. 5068-5074
-
-
Ditty, J.L.1
Harwood, C.S.2
-
39
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
40
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff S, Henikoff JG (1992) Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci U S A 89: 10915-10919.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
41
-
-
33746915689
-
Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter
-
Chandrasekaran A, Ojeda AM, Kolmakova NG, Parsons SM (2006) Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter. J Neurochem 98: 1551-1559.
-
(2006)
J Neurochem
, vol.98
, pp. 1551-1559
-
-
Chandrasekaran, A.1
Ojeda, A.M.2
Kolmakova, N.G.3
Parsons, S.M.4
-
42
-
-
27944458910
-
Using information theory to search for co-evolving residues in proteins
-
Martin LC, Gloor GB, Dunn SD, Wahl LM (2005) Using information theory to search for co-evolving residues in proteins. Bioinformatics 21: 4116-4124.
-
(2005)
Bioinformatics
, vol.21
, pp. 4116-4124
-
-
Martin, L.C.1
Gloor, G.B.2
Dunn, S.D.3
Wahl, L.M.4
-
43
-
-
0037147341
-
Multiple membrane-associated tryptophan residues contribute to the transport activity and substrate specificity of the human multidrug resistance protein, MRP1
-
Koike K, Oleschuk CJ, Haimeur A, Olsen SL, Deeley RG, et al. (2002) Multiple membrane-associated tryptophan residues contribute to the transport activity and substrate specificity of the human multidrug resistance protein, MRP1. J Biol Chem 277: 49495-49503.
-
(2002)
J Biol Chem
, vol.277
, pp. 49495-49503
-
-
Koike, K.1
Oleschuk, C.J.2
Haimeur, A.3
Olsen, S.L.4
Deeley, R.G.5
-
44
-
-
0026557830
-
The functions of tryptophan residues in membrane proteins
-
Schiffer M, Chang CH, Stevens FJ (1992) The functions of tryptophan residues in membrane proteins. Protein Eng 5: 213-214.
-
(1992)
Protein Eng
, vol.5
, pp. 213-214
-
-
Schiffer, M.1
Chang, C.H.2
Stevens, F.J.3
-
45
-
-
0036893269
-
Transmembrane helix predictions revisited
-
Chen CP, Kernytsky A, Rost B (2002) Transmembrane helix predictions revisited. Protein Sci 11: 2774-2791.
-
(2002)
Protein Sci
, vol.11
, pp. 2774-2791
-
-
Chen, C.P.1
Kernytsky, A.2
Rost, B.3
-
46
-
-
0347694571
-
Functional characterization of Candida albicans ABC transporter Cdr1p
-
Shukla S, Saini P, Smriti, Jha S, Ambudkar SV, et al. (2003) Functional characterization of Candida albicans ABC transporter Cdr1p. Eukaryot Cell 2: 1361-1375.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 1361-1375
-
-
Shukla, S.1
Saini, P.2
Smriti3
Jha, S.4
Ambudkar, S.V.5
-
47
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A, Blundell TL (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234: 779-815.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
48
-
-
0027412196
-
ALSCRIPT: A tool to format multiple sequence alignments
-
Barton GJ (1993) ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng 6: 37-40.
-
(1993)
Protein Eng
, vol.6
, pp. 37-40
-
-
Barton, G.J.1
-
49
-
-
0027764344
-
Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
-
Livingstone CD, Barton GJ (1993) Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput Appl Biosci 9: 745-756.
-
(1993)
Comput Appl Biosci
, vol.9
, pp. 745-756
-
-
Livingstone, C.D.1
Barton, G.J.2
-
50
-
-
33746621717
-
No single irreplaceable acidic residues in the Escherichia coli secondary multidrug transporter MdfA
-
Sigal N, Molshanski-Mor S, Bibi E (2006) No single irreplaceable acidic residues in the Escherichia coli secondary multidrug transporter MdfA. J Bacteriol 188: 5635-5639.
-
(2006)
J Bacteriol
, vol.188
, pp. 5635-5639
-
-
Sigal, N.1
Molshanski-Mor, S.2
Bibi, E.3
|