PHAT: A transmembrane-specific substitution matrix

Bioinformatics

Volumn 16, Issue 9, 2000, Pages 760-766

  Ng, Pauline C ^a   Henikoff, Jorja G ^b   Henikoff, Steven ^b  

^a University of Washington   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLOBULAR PROTEIN; MATRIX PROTEIN; MEMBRANE PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; EVOLUTION; EXTRACELLULAR MATRIX; GENETIC PROCEDURES; HYDROPHOBICITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; SCORING SYSTEM; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 0033670313     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/16.9.760     Document Type: Article

References (16)

1. Basic local alignment search tool
2. Amino acid substitution matrices from an information theoretic perspective
3. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
4. Atlas of Protein Sequence and Structure
5. Automated assembly of protein blocks for database searching
6. Amino acid substitution matrices from protein blocks
7. Performance evaluation of amino acid substitution matrices
8. Embedding strategies for effective use of information from multiple sequencealignments
9. Blocks+: A non-redundant database of protein alignment blocks derived from multiplecompilations
10. The PROSITE database, its status in 1999
11. The rapid generation of mutation data matrices from protein sequences
12. A mutation data matrix for transmembrane proteins
13. Comparison of methods for searching protein sequence databases
14. Prediction of transmembrane segments in proteins utilising multiple sequencealignments
15. Topology prediction for helical transmembrane proteins at 86% accuracy
16. Principles governing amino acid composition to integral membrane proteins:applications to topology prediction