-
1
-
-
0015276610
-
The mononuclear phagocyte system: a new classification of macrophages, monocytes, and their precursor cells
-
2480884, 4538544
-
van Furth R, Cohn ZA, Hirsch JG. The mononuclear phagocyte system: a new classification of macrophages, monocytes, and their precursor cells. Bull World Health Organ 1972, 46:845-52. 2480884, 4538544.
-
(1972)
Bull World Health Organ
, vol.46
, pp. 845-852
-
-
van Furth, R.1
Cohn, Z.A.2
Hirsch, J.G.3
-
2
-
-
0018871095
-
Establishment and characterization of a human acute monocytic leukemia cell line (THP-1)
-
10.1002/ijc.2910260208, 6970727
-
Tsuchiya S, Yamabe M, Yamaguchi Y. Establishment and characterization of a human acute monocytic leukemia cell line (THP-1). Int J Cancer 1980, 26:171-6. 10.1002/ijc.2910260208, 6970727.
-
(1980)
Int J Cancer
, vol.26
, pp. 171-176
-
-
Tsuchiya, S.1
Yamabe, M.2
Yamaguchi, Y.3
-
3
-
-
0025963002
-
The human leukemia cell line, THP-1: a multifacetted model for the study of monocyte-macrophage differentiation
-
10.1007/BF02041244, 1999239
-
Auwerx J. The human leukemia cell line, THP-1: a multifacetted model for the study of monocyte-macrophage differentiation. Experientia 1991, 47:22-31. 10.1007/BF02041244, 1999239.
-
(1991)
Experientia
, vol.47
, pp. 22-31
-
-
Auwerx, J.1
-
4
-
-
20544447499
-
Signal transduction of phorbol 12-myristate 13-acetate (PMA)-induced growth inhibition of human monocytic leukemia THP-1 cells is reactive oxygen dependent
-
10.1016/j.leukres.2004.12.011, 15978937
-
Traore K, Trush MA, George M. Signal transduction of phorbol 12-myristate 13-acetate (PMA)-induced growth inhibition of human monocytic leukemia THP-1 cells is reactive oxygen dependent. Leuk Res 2005, 29:863-79. 10.1016/j.leukres.2004.12.011, 15978937.
-
(2005)
Leuk Res
, vol.29
, pp. 863-879
-
-
Traore, K.1
Trush, M.A.2
George, M.3
-
5
-
-
33750813483
-
Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: new molecules and patterns of gene expression
-
Martinez FO, Gordon S, Locati M, Mantovani A. Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: new molecules and patterns of gene expression. J Immunol 2006, 177:7303-11.
-
(2006)
J Immunol
, vol.177
, pp. 7303-7311
-
-
Martinez, F.O.1
Gordon, S.2
Locati, M.3
Mantovani, A.4
-
6
-
-
65149083962
-
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
-
10.1038/ng.375, 19377474
-
Suzuki H, Forrest ARR, van Nimwegen E. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet 2009, 41(5):553-62. 10.1038/ng.375, 19377474.
-
(2009)
Nat Genet
, vol.41
, Issue.5
, pp. 553-562
-
-
Suzuki, H.1
Forrest, A.R.R.2
van Nimwegen, E.3
-
7
-
-
33747122691
-
MicroRNAs in mammalian development
-
10.1002/bdrc.20072, 16847889
-
Lee C, Risom T, Strauss WM. MicroRNAs in mammalian development. Birth Defects Res C Embryo Today 2006, 78:129-39. 10.1002/bdrc.20072, 16847889.
-
(2006)
Birth Defects Res C Embryo Today
, vol.78
, pp. 129-139
-
-
Lee, C.1
Risom, T.2
Strauss, W.M.3
-
8
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
10.1016/S0092-8674(04)00045-5, 14744438
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-97. 10.1016/S0092-8674(04)00045-5, 14744438.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
9
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
10.1016/S0092-8674(03)01018-3, 14697198
-
Lewis BP, Shih I, Jones-Rhoades MW, Bartel DP, Burge CB. Prediction of mammalian microRNA targets. Cell 2003, 115:787-98. 10.1016/S0092-8674(03)01018-3, 14697198.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
10
-
-
34250805982
-
MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
-
10.1016/j.molcel.2007.06.017, 17612493
-
Grimson A, Farh KK, Johnston WK. MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing. Molecular Cell 2007, 27:91-105. 10.1016/j.molcel.2007.06.017, 17612493.
-
(2007)
Molecular Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
-
11
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
10.1016/j.cell.2004.12.035, 15652477
-
Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20. 10.1016/j.cell.2004.12.035, 15652477.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
12
-
-
14044251458
-
Human MicroRNA Targets
-
521178, 15502875, 10.1371/journal.pbio.0020363
-
John B, Enright AJ, Aravin A. Human MicroRNA Targets. PLoS Biology 2004, 2:e363. 521178, 15502875, 10.1371/journal.pbio.0020363.
-
(2004)
PLoS Biology
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
-
13
-
-
33644750115
-
MiRBase: microRNA sequences, targets and gene nomenclature
-
1347474, 16381832, 10.1093/nar/gkj112
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucl Acids Res 2006, 34:D140-144. 1347474, 16381832, 10.1093/nar/gkj112.
-
(2006)
Nucl Acids Res
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
14
-
-
38549150275
-
MiRBase: tools for microRNA genomics
-
2238936, 17991681, 10.1093/nar/gkm952
-
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucl Acids Res 2008, 36:D154-158. 2238936, 17991681, 10.1093/nar/gkm952.
-
(2008)
Nucl Acids Res
, vol.36
-
-
Griffiths-Jones, S.1
Saini, H.K.2
van Dongen, S.3
Enright, A.J.4
-
15
-
-
38549124383
-
The microRNA.org resource: targets and expression
-
2238905, 18158296, 10.1093/nar/gkm995
-
Betel D, Wilson M, Gabow A, Marks DS, Sander C. The microRNA.org resource: targets and expression. Nucl Acids Res 2008, 36:D149-153. 2238905, 18158296, 10.1093/nar/gkm995.
-
(2008)
Nucl Acids Res
, vol.36
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.S.4
Sander, C.5
-
16
-
-
34347398567
-
Inference of miRNA targets using evolutionary conservation and pathway analysis
-
1838429, 17331257, 10.1186/1471-2105-8-69
-
Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 2007, 8:69. 1838429, 17331257, 10.1186/1471-2105-8-69.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 69
-
-
Gaidatzis, D.1
van Nimwegen, E.2
Hausser, J.3
Zavolan, M.4
-
17
-
-
4644227434
-
Trans-splicing and polyadenylation of let-7 microRNA primary transcripts
-
1370645, 15337850, 10.1261/rna.7122604
-
Bracht J, Hunter S, Eachus R, Weeks P, Pasquinelli AE. Trans-splicing and polyadenylation of let-7 microRNA primary transcripts. RNA 2004, 10:1586-94. 1370645, 15337850, 10.1261/rna.7122604.
-
(2004)
RNA
, vol.10
, pp. 1586-1594
-
-
Bracht, J.1
Hunter, S.2
Eachus, R.3
Weeks, P.4
Pasquinelli, A.E.5
-
18
-
-
9344235449
-
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs
-
1370684, 15525708, 10.1261/rna.7135204
-
Cai X, Hagedorn CH, Cullen BR. Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA 2004, 10:1957-66. 1370684, 15525708, 10.1261/rna.7135204.
-
(2004)
RNA
, vol.10
, pp. 1957-1966
-
-
Cai, X.1
Hagedorn, C.H.2
Cullen, B.R.3
-
19
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
524334, 15372072, 10.1038/sj.emboj.7600385
-
Lee Y, Kim M, Han J. MicroRNA genes are transcribed by RNA polymerase II. EMBO J 2004, 23:4051-60. 524334, 15372072, 10.1038/sj.emboj.7600385.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
-
20
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
10.1038/nature03049, 15531879
-
Denli AM, Tops BBJ, Plasterk RHA, Ketting RF, Hannon GJ. Processing of primary microRNAs by the Microprocessor complex. Nature 2004, 432:231-5. 10.1038/nature03049, 15531879.
-
(2004)
Nature
, vol.432
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.J.2
Plasterk, R.H.A.3
Ketting, R.F.4
Hannon, G.J.5
-
21
-
-
9144225636
-
The Microprocessor complex mediates the genesis of microRNAs
-
10.1038/nature03120, 15531877
-
Gregory RI, Yan K, Amuthan G. The Microprocessor complex mediates the genesis of microRNAs. Nature 2004, 432:235-40. 10.1038/nature03120, 15531877.
-
(2004)
Nature
, vol.432
, pp. 235-240
-
-
Gregory, R.I.1
Yan, K.2
Amuthan, G.3
-
22
-
-
1642499415
-
Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs
-
1370530, 14730017, 10.1261/rna.5167604
-
Bohnsack MT, Czaplinski K, Gorlich D. Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA 2004, 10:185-91. 1370530, 14730017, 10.1261/rna.5167604.
-
(2004)
RNA
, vol.10
, pp. 185-191
-
-
Bohnsack, M.T.1
Czaplinski, K.2
Gorlich, D.3
-
23
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
10.1038/nature01957, 14508493
-
Lee Y, Ahn C, Han J. The nuclear RNase III Drosha initiates microRNA processing. Nature 2003, 425:415-9. 10.1038/nature01957, 14508493.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
-
24
-
-
0037009364
-
MicroRNA maturation: stepwise processing and subcellular localization
-
126204, 12198168, 10.1093/emboj/cdf476
-
Lee Y, Jeon K, Lee J, Kim S, Kim VN. MicroRNA maturation: stepwise processing and subcellular localization. EMBO J 2002, 21:4663-70. 126204, 12198168, 10.1093/emboj/cdf476.
-
(2002)
EMBO J
, vol.21
, pp. 4663-4670
-
-
Lee, Y.1
Jeon, K.2
Lee, J.3
Kim, S.4
Kim, V.N.5
-
25
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
10.1126/science.1065062, 11679671
-
Lau NC, Lim LP, Weinstein EG, Bartel DP. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 2001, 294:858-62. 10.1126/science.1065062, 11679671.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
26
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
10.1126/science.1064921, 11679670
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 2001, 294:853-8. 10.1126/science.1064921, 11679670.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
27
-
-
29144528351
-
Expression of Arabidopsis MIRNA Genes
-
1183402, 16040653, 10.1104/pp.105.062943
-
Xie Z, Allen E, Fahlgren N. Expression of Arabidopsis MIRNA Genes. Plant Physiol 2005, 138:2145-2154. 1183402, 16040653, 10.1104/pp.105.062943.
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
-
28
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
10.1016/j.cell.2007.05.042, 17632057
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 2007, 130:77-88. 10.1016/j.cell.2007.05.042, 17632057.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
29
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
10.1016/j.cell.2007.05.009, 17512414
-
Barski A, Cuddapah S, Cui K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-37. 10.1016/j.cell.2007.05.009, 17512414.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
-
30
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
2586071, 18692474, 10.1016/j.cell.2008.07.020
-
Marson A, Levine SS, Cole MF. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 2008, 134:521-33. 2586071, 18692474, 10.1016/j.cell.2008.07.020.
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
Levine, S.S.2
Cole, M.F.3
-
31
-
-
34147094762
-
Inferring pairwise regulatory relationships from multiple time series datasets
-
10.1093/bioinformatics/btl676, 17237067
-
Shi Y, Mitchell T, Bar-Joseph Z. Inferring pairwise regulatory relationships from multiple time series datasets. Bioinformatics 2007, 23:755-763. 10.1093/bioinformatics/btl676, 17237067.
-
(2007)
Bioinformatics
, vol.23
, pp. 755-763
-
-
Shi, Y.1
Mitchell, T.2
Bar-Joseph, Z.3
-
32
-
-
0030848624
-
A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements
-
Arkin A, Shen P, Ross J. A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements. Science 1997, 277:1275-1279.
-
(1997)
Science
, vol.277
, pp. 1275-1279
-
-
Arkin, A.1
Shen, P.2
Ross, J.3
-
33
-
-
38149065301
-
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana
-
2198923, 18021423, 10.1186/1471-2105-8-454
-
Redestig H, Weicht D, Selbig J, Hannah M. Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics 2007, 8:454. 2198923, 18021423, 10.1186/1471-2105-8-454.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 454
-
-
Redestig, H.1
Weicht, D.2
Selbig, J.3
Hannah, M.4
-
34
-
-
3042514191
-
Coexpression Analysis of Human Genes Across Many Microarray Data Sets
-
419787, 15173114, 10.1101/gr.1910904
-
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P. Coexpression Analysis of Human Genes Across Many Microarray Data Sets. Genome Res 2004, 14:1085-1094. 419787, 15173114, 10.1101/gr.1910904.
-
(2004)
Genome Res
, vol.14
, pp. 1085-1094
-
-
Lee, H.K.1
Hsu, A.K.2
Sajdak, J.3
Qin, J.4
Pavlidis, P.5
-
35
-
-
4444352289
-
Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data
-
509275, 15289483, 10.1101/gr.2439804
-
Schmitt WA, Raab RM, Stephanopoulos G. Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data. Genome Res 2004, 14:1654-1663. 509275, 15289483, 10.1101/gr.2439804.
-
(2004)
Genome Res
, vol.14
, pp. 1654-1663
-
-
Schmitt, W.A.1
Raab, R.M.2
Stephanopoulos, G.3
-
36
-
-
34047264639
-
Direct regulation of an oncogenic micro-RNA cluster by E2F transcription factors
-
10.1074/jbc.C600252200, 17135268
-
Woods K, Thomson JM, Hammond SM. Direct regulation of an oncogenic micro-RNA cluster by E2F transcription factors. J Biol Chem 2007, 282:2130-4. 10.1074/jbc.C600252200, 17135268.
-
(2007)
J Biol Chem
, vol.282
, pp. 2130-2134
-
-
Woods, K.1
Thomson, J.M.2
Hammond, S.M.3
-
37
-
-
0035172256
-
The TRANSFAC system on gene expression regulation
-
29801, 11125113, 10.1093/nar/29.1.281
-
Wingender E, Chen X, Fricke E. The TRANSFAC system on gene expression regulation. Nucleic Acids Res 2001, 29:281-3. 29801, 11125113, 10.1093/nar/29.1.281.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 281-283
-
-
Wingender, E.1
Chen, X.2
Fricke, E.3
-
38
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
-
1347505, 16381825, 10.1093/nar/gkj143
-
Matys V, Kel-Margoulis OV, Fricke E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res 2006, 34:D108-10. 1347505, 16381825, 10.1093/nar/gkj143.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
-
39
-
-
34447279700
-
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
-
1906835, 17559637, 10.1186/1471-2105-8-188
-
Wu W, Li W, Chen B. Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data. BMC Bioinformatics 2007, 8:188. 1906835, 17559637, 10.1186/1471-2105-8-188.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 188
-
-
Wu, W.1
Li, W.2
Chen, B.3
-
40
-
-
0042706147
-
Genomic analysis of gene expression relationships in transcriptional regulatory networks
-
10.1016/S0168-9525(03)00175-6, 12902159
-
Yu H, Luscombe NM, Qian J, Gerstein M. Genomic analysis of gene expression relationships in transcriptional regulatory networks. Trends Genet 2003, 19:422-7. 10.1016/S0168-9525(03)00175-6, 12902159.
-
(2003)
Trends Genet
, vol.19
, pp. 422-427
-
-
Yu, H.1
Luscombe, N.M.2
Qian, J.3
Gerstein, M.4
-
41
-
-
0035861975
-
Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions
-
10.1006/jmbi.2000.5219, 11743722
-
Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M. Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions. J Mol Biol 2001, 314:1053-66. 10.1006/jmbi.2000.5219, 11743722.
-
(2001)
J Mol Biol
, vol.314
, pp. 1053-1066
-
-
Qian, J.1
Dolled-Filhart, M.2
Lin, J.3
Yu, H.4
Gerstein, M.5
-
42
-
-
0031978804
-
Transcription factors that regulate monocyte/macrophage differentiation
-
Valledor AF, Borràs FE, Cullell-Young M, Celada A. Transcription factors that regulate monocyte/macrophage differentiation. J Leukoc Biol 1998, 63:405-17.
-
(1998)
J Leukoc Biol
, vol.63
, pp. 405-417
-
-
Valledor, A.F.1
Borràs, F.E.2
Cullell-Young, M.3
Celada, A.4
-
43
-
-
2342429684
-
PE-1/METS, an antiproliferative Ets repressor factor, is induced by CREB-1/CREM-1 during macrophage differentiation
-
10.1074/jbc.M311991200, 14754893
-
Sawka-Verhelle D, Escoubet-Lozach L, Fong AL. PE-1/METS, an antiproliferative Ets repressor factor, is induced by CREB-1/CREM-1 during macrophage differentiation. J Biol Chem 2004, 279:17772-84. 10.1074/jbc.M311991200, 14754893.
-
(2004)
J Biol Chem
, vol.279
, pp. 17772-17784
-
-
Sawka-Verhelle, D.1
Escoubet-Lozach, L.2
Fong, A.L.3
-
44
-
-
44949148998
-
Both ERK and JNK are required for enhancement of MD-2 gene expression during differentiation of HL-60 cells
-
10.1042/BC20070140, 18181766
-
Li C, Yu Y, Wang Y. Both ERK and JNK are required for enhancement of MD-2 gene expression during differentiation of HL-60 cells. Biol Cell 2008, 100:365-75. 10.1042/BC20070140, 18181766.
-
(2008)
Biol Cell
, vol.100
, pp. 365-375
-
-
Li, C.1
Yu, Y.2
Wang, Y.3
-
45
-
-
5644294347
-
Spermine acts as a negative regulator of macrophage differentiation in human myeloid leukemia cells
-
10.1158/0008-5472.CAN-04-0051, 15492267
-
Gavin IM, Glesne D, Zhao Y, Kubera C, Huberman E. Spermine acts as a negative regulator of macrophage differentiation in human myeloid leukemia cells. Cancer Res 2004, 64:7432-8. 10.1158/0008-5472.CAN-04-0051, 15492267.
-
(2004)
Cancer Res
, vol.64
, pp. 7432-7438
-
-
Gavin, I.M.1
Glesne, D.2
Zhao, Y.3
Kubera, C.4
Huberman, E.5
-
46
-
-
31544452120
-
Tumor-suppression function of transcription factor USF2 in prostate carcinogenesis
-
Chen N, Szentirmay MN, Pawar SA. Tumor-suppression function of transcription factor USF2 in prostate carcinogenesis. Oncogene 2006, 25:579-87.
-
(2006)
Oncogene
, vol.25
, pp. 579-587
-
-
Chen, N.1
Szentirmay, M.N.2
Pawar, S.A.3
-
47
-
-
33747894577
-
TM4 microarray software suite
-
10.1016/S0076-6879(06)11009-5, 16939790
-
Saeed AI, Bhagabati NK, Braisted JC. TM4 microarray software suite. Methods Enzymol 2006, 411:134-93. 10.1016/S0076-6879(06)11009-5, 16939790.
-
(2006)
Methods Enzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
-
48
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
403769, 14597658, 10.1101/gr.1239303
-
Shannon P, Markiel A, Ozier O. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-504. 403769, 14597658, 10.1101/gr.1239303.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
-
49
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
2238879, 18077471, 10.1093/nar/gkm882
-
Kanehisa M, Araki M, Goto S. KEGG for linking genomes to life and the environment. Nucleic Acids Res 2008, 36:D480-4. 2238879, 18077471, 10.1093/nar/gkm882.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
-
50
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
10.1186/gb-2003-4-5-p3, 12734009
-
Dennis G, Sherman BT, Hosack DA. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003, 4:P3. 10.1186/gb-2003-4-5-p3, 12734009.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
-
51
-
-
42249090353
-
MiR-21 Gene expression triggered by AP-1 is sustained through a double-negative feedback mechanism
-
10.1016/j.jmb.2008.03.015, 18384814
-
Fujita S, Ito T, Mizutani T. miR-21 Gene expression triggered by AP-1 is sustained through a double-negative feedback mechanism. J Mol Biol 2008, 378:492-504. 10.1016/j.jmb.2008.03.015, 18384814.
-
(2008)
J Mol Biol
, vol.378
, pp. 492-504
-
-
Fujita, S.1
Ito, T.2
Mizutani, T.3
-
52
-
-
0027205319
-
Differences in expression of transcription factor AP-1 in human promyelocytic HL-60 cells during differentiation towards macrophages versus granulocytes
-
1134576, 8363564
-
Mollinedo F, Gajate C, Tugores A, Flores I, Naranjo JR. Differences in expression of transcription factor AP-1 in human promyelocytic HL-60 cells during differentiation towards macrophages versus granulocytes. Biochem J 1993, 294(Pt 1):137-44. 1134576, 8363564.
-
(1993)
Biochem J
, vol.294
, Issue.PART 1
, pp. 137-144
-
-
Mollinedo, F.1
Gajate, C.2
Tugores, A.3
Flores, I.4
Naranjo, J.R.5
-
53
-
-
34547524771
-
MicroRNA-21 regulates expression of the PTEN tumor suppressor gene in human hepatocellular cancer
-
10.1053/j.gastro.2007.05.022, 17681183
-
Meng F, Henson R, Wehbe-Janek H. MicroRNA-21 regulates expression of the PTEN tumor suppressor gene in human hepatocellular cancer. Gastroenterology 2007, 133:647-58. 10.1053/j.gastro.2007.05.022, 17681183.
-
(2007)
Gastroenterology
, vol.133
, pp. 647-658
-
-
Meng, F.1
Henson, R.2
Wehbe-Janek, H.3
-
54
-
-
40249092910
-
MicroRNA-21 targets tumor suppressor genes in invasion and metastasis
-
10.1038/cr.2008.24, 18270520
-
Zhu S, Wu H, Wu F. MicroRNA-21 targets tumor suppressor genes in invasion and metastasis. Cell Res 2008, 18:350-9. 10.1038/cr.2008.24, 18270520.
-
(2008)
Cell Res
, vol.18
, pp. 350-359
-
-
Zhu, S.1
Wu, H.2
Wu, F.3
-
55
-
-
38049146022
-
The interplay between the master transcription factor PU.1 and miR-424 regulates human monocyte/macrophage differentiation
-
2148386, 18056638, 10.1073/pnas.0706963104
-
Rosa A, Ballarino M, Sorrentino A. The interplay between the master transcription factor PU.1 and miR-424 regulates human monocyte/macrophage differentiation. Proc Natl Acad Sci USA 2007, 104:19849-54. 2148386, 18056638, 10.1073/pnas.0706963104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19849-19854
-
-
Rosa, A.1
Ballarino, M.2
Sorrentino, A.3
-
56
-
-
0037100304
-
Granulocyte inducer C/EBPalpha inactivates the myeloid master regulator PU.1: possible role in lineage commitment decisions
-
10.1182/blood.V100.2.483, 12091339
-
Reddy VA, Iwama A, Iotzova G. Granulocyte inducer C/EBPalpha inactivates the myeloid master regulator PU.1: possible role in lineage commitment decisions. Blood 2002, 100:483-90. 10.1182/blood.V100.2.483, 12091339.
-
(2002)
Blood
, vol.100
, pp. 483-490
-
-
Reddy, V.A.1
Iwama, A.2
Iotzova, G.3
-
57
-
-
54849412067
-
Complementary analysis of microRNA and mRNA expression during phorbol 12-myristate 13-acetate (TPA)-induced differentiation of HL-60 cells
-
10.1007/s10529-008-9800-8, 18648749
-
Chen A, Luo M, Yuan G. Complementary analysis of microRNA and mRNA expression during phorbol 12-myristate 13-acetate (TPA)-induced differentiation of HL-60 cells. Biotechnol Lett 2008, 30:2045-52. 10.1007/s10529-008-9800-8, 18648749.
-
(2008)
Biotechnol Lett
, vol.30
, pp. 2045-2052
-
-
Chen, A.1
Luo, M.2
Yuan, G.3
-
58
-
-
33845187907
-
Global mapping of c-Myc binding sites and target gene networks in human B cells
-
1635161, 17093053, 10.1073/pnas.0604129103
-
Zeller KI, Zhao X, Lee CWH. Global mapping of c-Myc binding sites and target gene networks in human B cells. Proc Natl Acad Sci USA 2006, 103:17834-9. 1635161, 17093053, 10.1073/pnas.0604129103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17834-17839
-
-
Zeller, K.I.1
Zhao, X.2
Lee, C.W.H.3
-
59
-
-
41449093809
-
B-cell receptor activation induces BIC/miR-155 expression through a conserved AP-1 element
-
10.1074/jbc.M708218200, 18048365
-
Yin Q, Wang X, McBride J, Fewell C, Flemington E. B-cell receptor activation induces BIC/miR-155 expression through a conserved AP-1 element. J Biol Chem 2008, 283:2654-62. 10.1074/jbc.M708218200, 18048365.
-
(2008)
J Biol Chem
, vol.283
, pp. 2654-2662
-
-
Yin, Q.1
Wang, X.2
McBride, J.3
Fewell, C.4
Flemington, E.5
-
60
-
-
56649123539
-
Epstein-Barr virus latent membrane protein 1 trans-activates miR-155 transcription through the NF-{kappa}B pathway
-
2582607, 18940871, 10.1093/nar/gkn666
-
Gatto G, Rossi A, Rossi D. Epstein-Barr virus latent membrane protein 1 trans-activates miR-155 transcription through the NF-{kappa}B pathway. Nucleic Acids Res 2008, 36:6608-6619. 2582607, 18940871, 10.1093/nar/gkn666.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6608-6619
-
-
Gatto, G.1
Rossi, A.2
Rossi, D.3
-
61
-
-
20444467290
-
A microRNA polycistron as a potential human oncogene
-
10.1038/nature03552, 15944707
-
He L, Thomson JM, Hemann MT. A microRNA polycistron as a potential human oncogene. Nature 2005, 435:828-33. 10.1038/nature03552, 15944707.
-
(2005)
Nature
, vol.435
, pp. 828-833
-
-
He, L.1
Thomson, J.M.2
Hemann, M.T.3
-
62
-
-
34047267329
-
An E2F/miR-20a autoregulatory feedback loop
-
10.1074/jbc.M608939200, 17135249
-
Sylvestre Y, De Guire V, Querido E. An E2F/miR-20a autoregulatory feedback loop. J Biol Chem 2007, 282:2135-43. 10.1074/jbc.M608939200, 17135249.
-
(2007)
J Biol Chem
, vol.282
, pp. 2135-2143
-
-
Sylvestre, Y.1
De Guire, V.2
Querido, E.3
-
63
-
-
51549115859
-
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition
-
2575517, 18700987, 10.1186/gb-2008-9-8-r127
-
Cloonan N, Brown M, Steptoe A. The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition. Genome Biol 2008, 9:R127. 2575517, 18700987, 10.1186/gb-2008-9-8-r127.
-
(2008)
Genome Biol
, vol.9
-
-
Cloonan, N.1
Brown, M.2
Steptoe, A.3
-
64
-
-
20444479428
-
C-Myc-regulated microRNAs modulate E2F1 expression
-
10.1038/nature03677, 15944709
-
O'Donnell KA, Wentzel EA, Zeller KI, Dang CV, Mendell JT. c-Myc-regulated microRNAs modulate E2F1 expression. Nature 2005, 435:839-43. 10.1038/nature03677, 15944709.
-
(2005)
Nature
, vol.435
, pp. 839-843
-
-
O'Donnell, K.A.1
Wentzel, E.A.2
Zeller, K.I.3
Dang, C.V.4
Mendell, J.T.5
-
65
-
-
0027426917
-
Heterodimerization of the transcription factors E2F-1 and DP-1 leads to cooperative trans-activation
-
10.1101/gad.7.10.1850, 8405995
-
Helin K, Wu CL, Fattaey AR. Heterodimerization of the transcription factors E2F-1 and DP-1 leads to cooperative trans-activation. Genes Dev 1993, 7:1850-61. 10.1101/gad.7.10.1850, 8405995.
-
(1993)
Genes Dev
, vol.7
, pp. 1850-1861
-
-
Helin, K.1
Wu, C.L.2
Fattaey, A.R.3
-
66
-
-
34347383305
-
MicroRNAs 17-5p-20a-106a control monocytopoiesis through AML1 targeting and M-CSF receptor upregulation
-
10.1038/ncb1613, 17589498
-
Fontana L, Pelosi E, Greco P. MicroRNAs 17-5p-20a-106a control monocytopoiesis through AML1 targeting and M-CSF receptor upregulation. Nat Cell Biol 2007, 9:775-87. 10.1038/ncb1613, 17589498.
-
(2007)
Nat Cell Biol
, vol.9
, pp. 775-787
-
-
Fontana, L.1
Pelosi, E.2
Greco, P.3
-
67
-
-
34748900267
-
Transgenic over-expression of the microRNA miR-17-92 cluster promotes proliferation and inhibits differentiation of lung epithelial progenitor cells
-
2052923, 17765889, 10.1016/j.ydbio.2007.08.007
-
Lu Y, Thomson JM, Wong HYF, Hammond SM, Hogan BL. Transgenic over-expression of the microRNA miR-17-92 cluster promotes proliferation and inhibits differentiation of lung epithelial progenitor cells. Developmental Biology 2007, 310:442-453. 2052923, 17765889, 10.1016/j.ydbio.2007.08.007.
-
(2007)
Developmental Biology
, vol.310
, pp. 442-453
-
-
Lu, Y.1
Thomson, J.M.2
Wong, H.Y.F.3
Hammond, S.M.4
Hogan, B.L.5
-
68
-
-
0032952029
-
Transcription factors Sp1 and AP-2 mediate induction of acid sphingomyelinase during monocytic differentiation
-
Langmann T, Buechler C, Ries S. Transcription factors Sp1 and AP-2 mediate induction of acid sphingomyelinase during monocytic differentiation. J Lipid Res 1999, 40:870-880.
-
(1999)
J Lipid Res
, vol.40
, pp. 870-880
-
-
Langmann, T.1
Buechler, C.2
Ries, S.3
-
69
-
-
0037135536
-
De Novo Sphingolipid Biosynthesis: A Necessary, but Dangerous, Pathway
-
10.1074/jbc.R200009200, 12011104
-
Merrill AH. De Novo Sphingolipid Biosynthesis: A Necessary, but Dangerous, Pathway. J Biol Chem 2002, 277:25843-25846. 10.1074/jbc.R200009200, 12011104.
-
(2002)
J Biol Chem
, vol.277
, pp. 25843-25846
-
-
Merrill, A.H.1
-
70
-
-
34249098071
-
Mammalian RNA polymerase II core promoters: insights from genome-wide studies
-
10.1038/nrg2026, 17486122
-
Sandelin A, Carninci P, Lenhard B. Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nat Rev Genet 2007, 8:424-36. 10.1038/nrg2026, 17486122.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 424-436
-
-
Sandelin, A.1
Carninci, P.2
Lenhard, B.3
-
71
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
10.1038/ng1789, 16645617
-
Carninci P, Sandelin A, Lenhard B. Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 2006, 38:626-35. 10.1038/ng1789, 16645617.
-
(2006)
Nat Genet
, vol.38
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
-
72
-
-
33745623128
-
Post-transcriptional regulation of microRNA expression
-
1484437, 16738409, 10.1261/rna.2322506
-
Obernosterer G, Leuschner PJF, Alenius M, Martinez J. Post-transcriptional regulation of microRNA expression. RNA 2006, 12:1161-7. 1484437, 16738409, 10.1261/rna.2322506.
-
(2006)
RNA
, vol.12
, pp. 1161-1167
-
-
Obernosterer, G.1
Leuschner, P.J.F.2
Alenius, M.3
Martinez, J.4
-
73
-
-
85044556043
-
Induction of microRNAs mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation
-
Forrest ARR, Kanamori-Katayama M, Tomaru Y. Induction of microRNAs mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation. Leukemia
-
Leukemia
-
-
Forrest, A.R.R.1
Kanamori-Katayama, M.2
Tomaru, Y.3
-
76
-
-
4344594885
-
Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR
-
10.1016/j.febslet.2004.07.068, 15328000
-
Suzuki H, Okunishi R, Hashizume W. Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR. FEBS Lett 2004, 573:214-8. 10.1016/j.febslet.2004.07.068, 15328000.
-
(2004)
FEBS Lett
, vol.573
, pp. 214-218
-
-
Suzuki, H.1
Okunishi, R.2
Hashizume, W.3
-
77
-
-
65549139459
-
Data-driven normalization strategies for high-throughput quantitative RT-PCR
-
2680405, 19374774, 10.1186/1471-2105-10-110
-
Mar JC, Kimura Y, Schroder K. Data-driven normalization strategies for high-throughput quantitative RT-PCR. BMC Bioinformatics 2009, 10:110. 2680405, 19374774, 10.1186/1471-2105-10-110.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 110
-
-
Mar, J.C.1
Kimura, Y.2
Schroder, K.3
-
78
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
10.1038/35057062, 11237011
-
Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921. 10.1038/35057062, 11237011.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
79
-
-
33644874573
-
The UCSC Genome Browser Database: update 2006
-
1347506, 16381938, 10.1093/nar/gkj144
-
Hinrichs AS, Karolchik D, Baertsch R. The UCSC Genome Browser Database: update 2006. Nucl Acids Res 2006, 34:D590-598. 1347506, 16381938, 10.1093/nar/gkj144.
-
(2006)
Nucl Acids Res
, vol.34
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
-
80
-
-
0041853625
-
MATCHTM: a tool for searching transcription factor binding sites in DNA sequences
-
169193, 12824369, 10.1093/nar/gkg585
-
Kel A, Gossling E, Reuter I. MATCHTM: a tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res 2003, 31:3576-3579. 169193, 12824369, 10.1093/nar/gkg585.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
-
-
Kel, A.1
Gossling, E.2
Reuter, I.3
-
81
-
-
0347755643
-
The microRNA Registry
-
308757, 14681370, 10.1093/nar/gkh023
-
Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res 2004, 32:D109-11. 308757, 14681370, 10.1093/nar/gkh023.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Griffiths-Jones, S.1
-
82
-
-
24044522270
-
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
-
10.1093/bioinformatics/bti525, 16082012
-
Durinck S, Moreau Y, Kasprzyk A. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 2005, 21:3439-40. 10.1093/bioinformatics/bti525, 16082012.
-
(2005)
Bioinformatics
, vol.21
, pp. 3439-3440
-
-
Durinck, S.1
Moreau, Y.2
Kasprzyk, A.3
|