Complementary analysis of microRNA and mRNA expression during phorbol 12-myristate 13-acetate (TPA)-induced differentiation of HL-60 cells

Biotechnology Letters

Volumn 30, Issue 12, 2008, Pages 2045-2052

  Chen, Ailiang ^a,b,c   Luo, Mingyong ^c   Yuan, Guohua ^d   Yu, Jian ^a,b,c   Deng, Tuo ^a,b,c   Zhang, Liang ^c   Zhou, Yuxiang ^a,b,c   Mitchelson, Keith ^a,c   Cheng, Jing ^a,b,c  

^a Tsinghua University   (China)

^b TSINGHUA UNIVERSITY   (China)

^c NATIONAL ENGINEERING RESEARCH CENTER FOR BEIJING BIOCHIP TECHNOLOGY   (China)

^d AFFILIATED HOSPITAL OF NORTH SICHUAN MEDICAL COLLEGE   (China)

Author keywords

Cell differentiation; HL 60; Microarray; MicroRNA; TPA

Indexed keywords

CALCIUM ION SENSORS; DIFFERENTIATION (CALCULUS); LIGHT ABSORPTION; LUMINESCENCE OF ORGANIC SOLIDS; MOLECULAR GRAPHICS; NETWORK PROTOCOLS; SENSOR NETWORKS;

ANNOTATION SYSTEMS; BIOLOGICAL PHENOMENON; CELL DIFFERENTIATION; COMPLEMENTARY ANALYSIS; GENE REGULATORY NETWORKS; HL-60; IN VITRO; INTERACTION DATABASES; MICRORNA; MICRORNAS; MRNA EXPRESSIONS; MYELOID DIFFERENTIATIONS; REGULATORY PATHWAYS; TPA; TRANSCRIPTOME;

LAWS AND LEGISLATION;

MESSENGER RNA; MICRORNA; PHORBOL 13 ACETATE 12 MYRISTATE;

ARTICLE; BIOLOGY; CELL DIFFERENTIATION; CELL LINEAGE; CELL STRAIN HL 60; CYTOLOGY; DNA MICROARRAY; DOWN REGULATION; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; HUMAN; MACROPHAGE; METABOLISM; MONOCYTE; POLYMERASE CHAIN REACTION; UPREGULATION;

CELL DIFFERENTIATION; CELL LINEAGE; COMPUTATIONAL BIOLOGY; DOWN-REGULATION; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORKS; HL-60 CELLS; HUMANS; MACROPHAGES; MICRORNAS; MONOCYTES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; RNA, MESSENGER; TETRADECANOYLPHORBOL ACETATE; UP-REGULATION;

EID: 54849412067     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-008-9800-8     Document Type: Article

References (27)

1. V Ambros 2003 MicroRNA pathways in flies and worms: growth, death, fat, stress, and timing Cell 113 673 676
2. S Benzeno G Narla J Allina GZ Cheng HL Reeves MS Banck JA Odin JA Diehl D Germain SL Friedman 2004 Cyclin-dependent kinase inhibition by the KLF6 tumor suppressor protein through interaction with cyclin D1 Cancer Res 64 3885 3891
3. P Blume-Jensen R Janknecht T Hunter 1998 The kit receptor promotes cell survival via activation of PI 3-kinase and subsequent Akt-mediated phosphorylation of Bad on Ser136 Curr Biol 8 779 782
4. A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeckert J Aach W Ansorge CA Ball HC Causton T Gaasterland P Glenisson FC Holstege IF Kim V Markowitz JC Matese H Parkinson A Robinson U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo M Vingron 2001 Minimum information about a microarray experiment (MIAME)-toward standards for microarray data Nat Genet 29 365 371
5. O Bruserud BT Gjertsen 2000 New strategies for the treatment of acute myelogenous leukemia: differentiation induction-present use and future possibilities Stem Cells 18 157 165
6. C Chen DA Ridzon AJ Broomer Z Zhou DH Lee JT Nguyen M Barbisin NL Xu VR Mahuvakar MR Andersen KQ Lao KJ Livak KJ Guegler 2005 Real-time quantification of microRNAs by stem-loop RT-PCR Nucleic Acids Res 33 e179
7. SJ Collins 1987 The HL-60 promyelocytic leukemia cell line: proliferation, differentiation, and cellular oncogene expression Blood 70 1233 1244
8. N Felli L Fontana E Pelosi R Botta D Bonci F Facchiano F Liuzzi V Lulli O Morsilli S Santoro M Valtieri GA Calin CG Liu A Sorrentino CM Croce C Peschle 2005 MicroRNAs 221 and 222 inhibit normal erythropoiesis and erythroleukemic cell growth via kit receptor down-modulation Proc Natl Acad Sci USA 102 18081 18086
9. RW Georgantas 3rd R Hildreth S Morisot J Alder CG Liu S Heimfeld GA Calin CM Croce CI Civin 2007 CD34 + hematopoietic stem-progenitor cell microRNA expression and function: a circuit diagram of differentiation control Proc Natl Acad Sci USA 104 2750 2755
10. G Goel HP Makkar G Francis K Becker 2007 Phorbol esters: structure, biological activity, and toxicity in animals Int J Toxicol 26 279 288
11. Y Guo Z Chen L Zhang F Zhou S Shi X Feng B Li X Meng X Ma M Luo K Shao N Li B Qiu K Mitchelson J Cheng J He 2008 Distinctive microRNA profiles relating to patient survival in esophageal squamous cell carcinoma Cancer Res 68 26 33
12. Y Guo H Guo L Zhang H Xie X Zhao F Wang Z Li Y Wang S Ma J Tao W Wang Y Zhou W Yang J Cheng 2005 Genomic analysis of anti-hepatitis B virus (HBV) activity by small interfering RNA and lamivudine in stable HBV-producing cells J Virol 79 14392 14403
13. LY Hu CG Tepper SH Lo WC Lin 2006 An efficient strategy to identify early TPA-responsive genes during differentiation of HL-60 cells Gene Expr 13 179 189
14. S Jalal Hosseinimehr O Inanami T Hamasu M Takahashi I Kashiwakura T Asanuma M Kuwabara 2004 Activation of c-kit by stem cell factor induces radioresistance to apoptosis through ERK-dependent expression of survivin in HL-60 cells J Radiat Res (Tokyo) 45 557 561
15. K Kasashima Y Nakamura T Kozu 2004 Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells Biochem Biophys Res Commun 322 403 410
16. MY Luo ZG Tian Z Xu L Zhang YX Wang J Cheng 2007 Construction and Application of a Microarray Profiling MicroRNA Expression Prog Biochem Biophys (Chinese) 34 31 41
17. E Matsumoto M Hatanaka M Bohgaki S Maeda 2006 PKC pathway and ERK/MAPK pathway are required for induction of cyclin D1 and p21Waf1 during 12-o-tetradecanoylphorbol 13-acetate-induced differentiation of myeloleukemia cells Kobe J Med Sci 52 181 194
18. J Mattes A Collison PS Foster 2008 Emerging role of microRNAs in disease pathogenesis and strategies for therapeutic modulation Curr Opin Mol Ther 10 150 157
19. RL Mitchell L Zokas RD Schreiber IM Verma 1985 Rapid induction of the expression of proto-oncogene fos during human monocytic differentiation Cell 40 209 217
20. RM O'Connell KD Taganov MP Boldin G Cheng D Baltimore 2007 MicroRNA-155 is induced during the macrophage inflammatory response Proc Natl Acad Sci USA 104 1604 1609
21. YH Shi SW Zhu XZ Mao JX Feng YM Qin L Zhang J Cheng LP Wei ZY Wang YX Zhu 2006 Transcriptome profiling, molecular biological, and physiological studies reveal a major role for ethylene in cotton fiber cell elongation Plant Cell 18 651 664
22. KD Taganov MP Boldin KJ Chang D Baltimore 2006 NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses Proc Natl Acad Sci USA 103 12481 12486
23. KD Taganov MP Boldin D Baltimore 2007 MicroRNAs and immunity: tiny players in a big field Immunity 26 133 137
24. JM Thomson J Parker CM Perou SM Hammond 2004 A custom microarray platform for analysis of microRNA gene expression Nat Methods 1 47 53
25. YH Yang S Dudoit P Luu DM Lin V Peng J Ngai TP Speed 2002 Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation Nucleic Acids Res 30 e15
26. J Yu L Zhang A Chen G Xiang Y Wang J Wu K Mitchelson J Cheng Y Zhou 2008 Identification of the gene transcription and apoptosis mediated by TGF-beta-Smad2/3-Smad4 signaling J Cell Physiol 215 422 433
27. X Zheng R Ravatn Y Lin WC Shih A Rabson R Strair E Huberman A Conney KV Chin 2002 Gene expression of TPA induced differentiation in HL-60 cells by DNA microarray analysis Nucleic Acids Res 30 4489 4499