The mannitol operon repressor MtlR belongs to a new class of transcription regulators in bacteria

Journal of Biological Chemistry

Volumn 284, Issue 52, 2009, Pages 36670-36679

  Tan, Kemin ^a   Clancy, Shonda ^a   Borovilos, Maria ^a   Zhou, Min ^a   Hörer, Stefan ^b   Moy, Shiu ^a   Volkart, Lour L ^a   Sassoon, Judyth ^b   Baumann, Ulrich ^b   Joachimiak, Andrzej ^a  

^a ARGONNE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF BERN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ESCHERICHIA COLI; POLYOLS; PROTEINS; TRANSCRIPTION;

DNA BINDING STUDIES; ELECTROSTATIC PROPERTIES; PHOSPHOENOLPYRUVATES; PHOSPHOTRANSFERASE SYSTEM; STRUCTURAL MOTIFS; STRUCTURAL OBSERVATIONS; TRANSCRIPTIONAL COMPLEXES; TRANSCRIPTIONAL FACTORS;

DRUG PRODUCTS;

BACTERIAL PROTEIN; MANNITOL OPERON REPRESSOR; PHOSPHOENOLPYRUVATE SUGAR PHOSPHOTRANSFERASE; PROTEIN YGGD; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CATALYSIS; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; DNA BINDING; ENZYME PHOSPHORYLATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETIC SIMILARITY; NONHUMAN; OPERON; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN MOTIF; PROTEIN PURIFICATION; PROTEIN STRUCTURE; SHIGELLA FLEXNERI; VIBRIO PARAHAEMOLYTICUS;

ESCHERICHIA COLI; SHIGELLA FLEXNERI; VIBRIO;

EID: 73649138237     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.062679     Document Type: Article

References (51)

1. Saier, M. H., Jr., and Reizer, J. (1994) Mol. Microbiol. 13, 755-764
2. Barabote, R. D., and Saier, M. H., Jr. (2005) Microbiol. Mol. Biol. Rev. 69, 608-634
3. Henstra, S. A., Tuinhof, M., Duurkens, R. H., and Robillard, G. T. (1999) J. Biol. Chem. 274, 4754-4763
4. Berkowitz, D. (1971) J. Bacteriol. 105, 232-240
5. Lengeler, J. (1975) J. Bacteriol. 124, 39-47
6. Lee, C. A., and Saier, M. H., Jr. (1983) J. Biol. Chem. 258, 10761-10767
7. Davis, T., Yamada, M., Elgort, M., and Saier, M. H., Jr. (1988) Mol. Microbiol. 2, 405-412
8. Jiang, W., Wu, L. F., Tomich, J., Saier, M. H., Jr., and Niehaus, W. G. (1990) Mol. Microbiol. 4, 2003-2006
9. Figge, R. M., Ramseier, T. M., and Saier, M. H., Jr. (1994) J. Bacteriol. 176, 840-847
10. Wei, J., Goldberg, M. B., Burland, V., Venkatesan, M. M., Deng, W., Fournier, G., Mayhew, G. F., Plunkett, G., 3rd, Rose, D. J., Darling, A., Mau, B., Perna, N. T., Payne, S. M., Runyen-Janecky, L. J., Zhou, S., Schwartz, D. C., and Blattner, F. R. (2003) Infect. Immun. 71, 2775-2786
11. Chiu, C. H., Tang, P., Chu, C., Hu, S., Bao, Q., Yu, J., Chou, Y. Y., Wang, H. S., and Lee, Y. S. (2005) Nucleic Acids Res. 33, 1690-1698
12. Song, Y., Tong, Z., Wang, J., Wang, L., Guo, Z., Han, Y., Zhang, J., Pei, D., Zhou, D., Qin, H., Pang, X., Han, Y., Zhai, J., Li, M., Cui, B., Qi, Z., Jin, L., Dai, R., Chen, F., Li, S., Ye, C., Du, Z., Lin, W., Wang, J., Yu, J., Yang, H., Wang, J., Huang, P., and Yang, R. (2004) DNA Res. 11, 179-197
13. Otte, S., and Lengeler, J. W. (2001) FEMS Microbiol. Lett. 194, 221-227
14. Otte, S., Scholle, A., Turgut, S., and Lengeler, J. W. (2003) J. Bacteriol. 185, 2267-2276
15. Makino, K., Oshima, K., Kurokawa, K., Yokoyama, K., Uda, T., Tagomori, K., Iijima, Y., Najima, M., Nakano, M., Yamashita, A., Kubota, Y., Kimura, S., Yasunaga, T., Honda, T., Shinagawa, H., Hattori, M., and Iida, T. (2003) Lancet 361, 743-749
16. Yu, C., Li, Y., Xia, B., and Jin, C. (2007) Biochem. Biophys. Res. Commun. 362, 1001-1006
17. Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L., Studholme, D. J., Yeats, C., and Eddy, S. R. (2004) Nucleic Acids Res. 32, D138-D141
18. van Montfort, R. L., Pijning, T., Kalk, K. H., Hangyi, I., Kouwijzer, M. L., Robillard, G. T., and Dijkstra, B. W. (1998) Structure 6, 377-388
19. Kim, Y., Quartey, P., Li, H., Volkart, L., Hatzos, C., Chang, C., Nocek, B., Cuff, M., Osipiuk, J., Tan, K., Fan, Y., Bigelow, L., Maltseva, N., Wu, R., Borovilos, M., Duggan, E., Zhou, M., Binkowski, T. A., Zhang, R. G., and Joachimiak, A. (2008) Nat. Methods 5, 853-854
20. Stols, L., Gu, M., Dieckman, L., Raffen, R., Collart, F. R., and Donnelly, M. I. (2002) Protein Expr. Purif. 25, 8-15
21. Kim, Y., Dementieva, I., Zhou, M., Wu, R., Lezondra, L., Quartey, P., Joachimiak, G., Korolev, O., Li, H., and Joachimiak, A. (2004) J. Struct. Funct. Genomics 5, 111-118
22. Donnelly, M. I., Zhou, M., Millard, C. S., Clancy, S., Stols, L., Eschenfeldt, W. H., Collart, F. R., and Joachimiak, A. (2006) Protein Expr. Purif. 47, 446-454
23. Sassoon, J., Hörer, S., Stoop, J., Mooibroek, H., and Baumann, U. (2001) Acta Crystallogr. D Biol. Crystallogr. 57, 711-713
24. Minor, W., Cymborowski, M., Otwinowski, Z., and Chruszcz, M. (2006) Acta Crystallogr. D Biol. Crystallogr. 62, 859-866
25. Schneider, T. R., and Sheldrick, G. M. (2002) Acta Crystallogr. D Biol. Crystallogr. 58, 1772-1779
26. CCP4 (1994) Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
27. Terwilliger, T. C. (2003) Methods Enzymol. 374, 22-37
28. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
29. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
30. Branden, C., and Tooze, J. (1991) Introduction to Protein Structure, pp. 36-37, Garland Publishing, Inc., New York
31. Lo Conte, L., Chothia, C., and Janin, J. (1999) J. Mol. Biol. 285, 2177-2198
32. Holm, L., and Sander, C. (1995) Trends Biochem. Sci. 20, 478-480
33. Pedersen, L. C., Benning, M. M., and Holden, H. M. (1995) Biochemistry 34, 13305-13311
34. George, A. J., French, R. R., and Glennie, M. J. (1995) J. Immunol. Methods 183, 51-63
35. Rubio, I., Buckle, P., Trutnau, H., and Wetzker, R. (1997) Bio Techniques 22, 269-271
36. Ramseier, T. M., Bledig, S., Michotey, V., Feghali, R., and Saier, M. H., Jr. (1995) Mol. Microbiol. 16, 1157-1169
37. Rost, B., and Liu, J. (2003) Nucleic Acids Res. 31, 3300-3304
38. Yang, F., Yang, J., Zhang, X., Chen, L., Jiang, Y., Yan, Y., Tang, X., Wang, J., Xiong, Z., Dong, J., Xue, Y., Zhu, Y., Xu, X., Sun, L., Chen, S., Nie, H., Peng, J., Xu, J., Wang, Y., Yuan, Z., Wen, Y., Yao, Z., Shen, Y., Qiang, B., Hou, Y., Yu, J., and Jin, Q. (2005) Nucleic Acids Res. 33, 6445-6458
39. Anderson, W. F., Ohlendorf, D. H., Takeda, Y., and Matthews, B. W. (1981) Nature 290, 754-758
40. Luscombe, N. M., Austin, S. E., Berman, H. M., and Thornton, J. M. (2000) Genome Biol. 1, REVIEWS001
41. Felder, C. E., Botti, S. A., Lifson, S., Silman, I., and Sussman, J. L. (1997) J. Mol. Graphics Model. 15, 318-327
42. Botti, S. A., Felder, C. E., Sussman, J. L., and Silman, I. (1998) Protein Eng. 11, 415-420
43. Stawiski, E. W., Gregoret, L. M., and Mandel-Gutfreund, Y. (2003) J. Mol. Biol. 326, 1065-1079
44. Ahmad, S., and Sarai, A. (2004) J. Mol. Biol. 341, 65-71
45. Ramseier, T. M., and Saier, M. H., Jr. (1995) Microbiology 141, 1901-1907
46. Watanabe, S., Hamano, M., Kakeshita, H., Bunai, K., Tojo, S., Yamaguchi, H., Fujita, Y., Wong, S. L., and Yamane, K. (2003) J. Bacteriol. 185, 4816-4824
47. Honeyman, A. L., and Curtiss, R., 3rd (2000) Microbiology 146, 1565-1572
48. Behrens, S., Mitchell, W., and Bahl, H. (2001) Microbiology 147, 75-86
49. Henstra, S. A., Tolner, B., ten Hoeve Duurkens, R. H., Konings, W. N., and Robillard, G. T. (1996) J. Bacteriol. 178, 5586-5591
50. Henstra, S. A., Duurkens, R. H., and Robillard, G. T. (2000) J. Biol. Chem. 275, 7037-7044
51. Nicholls, A., Sharp, K. A., and Honig, B. (1991) Proteins 11, 281-296