-
1
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies
-
H.J. Bandelt P. Forster A. Röhl 1999 Median-joining networks for inferring intraspecific phylogenies Mol. Biol. Evol. 16 37 48
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 37-48
-
-
Bandelt, H.J.1
Forster, P.2
Röhl, A.3
-
2
-
-
0003644056
-
-
USA: Cold Spring Harbor Laboratory Press
-
Birren, B., Green, E.D., Klapholz, S., Myers, R.M., and Roskams, J. (1997). Genome Analysis: A Laboratory Manual (USA: Cold Spring Harbor Laboratory Press).
-
(1997)
Genome Analysis: A Laboratory Manual
-
-
Birren, B.1
Green, E.D.2
Klapholz, S.3
Myers, R.M.4
Roskams, J.5
-
6
-
-
0003458148
-
Origin of the Japanese land mammal fauna: Allocation of extant species to historically-based categories
-
M. Dobson K. Yoshinari 1998 Origin of the Japanese land mammal fauna: Allocation of extant species to historically-based categories Daiyonki Kenkyu. 37 385 395
-
(1998)
Daiyonki Kenkyu.
, vol.37
, pp. 385-395
-
-
Dobson, M.1
Yoshinari, K.2
-
8
-
-
1642388330
-
Patterns of DNA sequence diversity and genetic structure after a range expansion: Lessons from the infiniteisland model
-
L. Excoffier 2004 Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infiniteisland model Mol. Ecol. 13 853 864
-
(2004)
Mol. Ecol.
, vol.13
, pp. 853-864
-
-
Excoffier, L.1
-
9
-
-
85007110786
-
Arlequin ver. 3.0: An integrated software package for population genetics data analysis
-
L. Excoffier G. Laval S. Schneider 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis Evol. Bioinform. Online 1 47 50
-
(2005)
Evol. Bioinform. Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
10
-
-
20844437233
-
The phylogeny of Chinese indigenous pig breeds inferred from microsatellite markers
-
M. Fang X. Hu T. Jiang M. Braunschweig L. Hu Z. Du J. Feng Q. Zhang C. Wu N. Li 2005 The phylogeny of Chinese indigenous pig breeds inferred from microsatellite markers Anim. Genet. 36 7 13
-
(2005)
Anim. Genet.
, vol.36
, pp. 7-13
-
-
Fang, M.1
Hu, X.2
Jiang, T.3
Braunschweig, M.4
Hu, L.5
Du, Z.6
Feng, J.7
Zhang, Q.8
Wu, C.9
Li, N.10
-
11
-
-
0030821992
-
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
-
Y.X. Fu 1997 Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection Genetics 147 915 925
-
(1997)
Genetics
, vol.147
, pp. 915-925
-
-
Fu, Y.X.1
-
14
-
-
0022376704
-
Dating of the humanape splitting by a molecular clock of mitochondrial DNA
-
M. Hasegawa H. Kishino T. Yano 1985 Dating of the humanape splitting by a molecular clock of mitochondrial DNA J. Mol. Evol. 22 160 174
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
15
-
-
85066290892
-
Zoological considerations on the origins of farming and domestication
-
C.A. Reed, eds. (Mouton: The Hague)
-
Herre, W., and Rohrs, M. (1977). Zoological considerations on the origins of farming and domestication. In Handbook of Origins of Agriculture, C.A. Reed, eds. (Mouton: The Hague), pp. 245-279.
-
(1977)
In Handbook of Origins of Agriculture
, pp. 245-279
-
-
Herre, W.1
Rohrs, M.2
-
16
-
-
0036879893
-
Variation in mitochondrial DNA of Vietnamese pigs: Relationships with Asian Domestic pigs and Ryukyu wild boars
-
H. Hongo N. Ishiguro T. Watanobe N. Shigehara T. Anezaki V.T. Long D.V. Bihn N.T. Tien N.H. Nam 2002 Variation in mitochondrial DNA of Vietnamese pigs: relationships with Asian Domestic pigs and Ryukyu wild boars Zool. Sci. 19 1329 1335
-
(2002)
Zool. Sci.
, vol.19
, pp. 1329-1335
-
-
Hongo, H.1
Ishiguro, N.2
Watanobe, T.3
Shigehara, N.4
Anezaki, T.5
Long, V.T.6
Bihn, D.V.7
Tien, N.T.8
Nam, N.H.9
-
17
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogeny
-
J.P. Huelsenbeck F. Ronquist 2001 MRBAYES: Bayesian inference of phylogeny Bioinformatics 17 754 755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
18
-
-
71549152294
-
Last glacial and Holocene land mammals of the Japanese islands: Their fauna, extinction and immigration
-
Y. Kawamura 2007 Last glacial and Holocene land mammals of the Japanese islands: their fauna, extinction and immigration The Quaternary Research 46 171 177
-
(2007)
The Quaternary Research
, vol.46
, pp. 171-177
-
-
Kawamura, Y.1
-
19
-
-
0035023792
-
A phylogenetic study of the domestic pig estimated from the near-complete mtDNA genome
-
J.M.H. Kijas L. Andersson 2001 A phylogenetic study of the domestic pig estimated from the near-complete mtDNA genome J. Mol. Evol. 52 302 308
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 302-308
-
-
Kijas, J.M.H.1
Andersson, L.2
-
20
-
-
0036171461
-
Phylogenetic relationships of Asian and European pig breeds determinated by mitochondrial DNA D-loop sequence polymorphism
-
K.I. Kim J.H. Lee K. Li Y.P. Zhang S.S. Lee J. Gongora C. Moran 2002 Phylogenetic relationships of Asian and European pig breeds determinated by mitochondrial DNA D-loop sequence polymorphism Anim. Genet. 33 19 25
-
(2002)
Anim. Genet.
, vol.33
, pp. 19-25
-
-
Kim, K.I.1
Lee, J.H.2
Li, K.3
Zhang, Y.P.4
Lee, S.S.5
Gongora, J.6
Moran, C.7
-
21
-
-
20144362963
-
Worldwide phylogeography of wild boar reveals multiple centers of pig domestication
-
G. Larson K. Dobney U. Albarella M. Fang E. Matisoo-Smith J. Robins S. Lowden H. Finlayson T. Brand E. Willerslev, et al. 2005 Worldwide phylogeography of wild boar reveals multiple centers of pig domestication Science 307 1618 1621
-
(2005)
Science
, vol.307
, pp. 1618-1621
-
-
Larson, G.1
Dobney, K.2
Albarella, U.3
Fang, M.4
Matisoo-Smith, E.5
Robins, J.6
Lowden, S.7
Finlayson, H.8
Brand, T.9
Willerslev, E.10
-
22
-
-
34848916115
-
Ancient DNA, pig domestication, and the spread of the Neolithic into Europe
-
G. Larson U. Albarella K. Dobney P. Rowley-Conwy J. Schibler A. Tresset J.D. Vigne C.J. Edwards A. Schlumbaum A. Dinu, et al. 2007 Ancient DNA, pig domestication, and the spread of the Neolithic into Europe Proc. Natl. Acad. Sci. USA 104 15276 15281
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 15276-15281
-
-
Larson, G.1
Albarella, U.2
Dobney, K.3
Rowley-Conwy, P.4
Schibler, J.5
Tresset, A.6
Vigne, J.D.7
Edwards, C.J.8
Schlumbaum, A.9
Dinu, A.10
-
23
-
-
2342656363
-
Genetic diversity analyses of 10 indigenous Chinese pig populations based on 20 microsatellites
-
S.J. Li S.H. Yang S.H. Zhao B. Fan M. Yu H.S. Wang M.H. Li B. Liu T.A. Xiong K. Li 2004 Genetic diversity analyses of 10 indigenous Chinese pig populations based on 20 microsatellites J. Anim. Sci. 82 368 374
-
(2004)
J. Anim. Sci.
, vol.82
, pp. 368-374
-
-
Li, S.J.1
Yang, S.H.2
Zhao, S.H.3
Fan, B.4
Yu, M.5
Wang, H.S.6
Li, M.H.7
Liu, B.8
Xiong, T.A.9
Li, K.10
-
24
-
-
0032811361
-
Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within Artiodactyla
-
C.S. Lin Y.L. Sun C.Y. Liu 1999 Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within Artiodactyla Gene 236 107 114
-
(1999)
Gene
, vol.236
, pp. 107-114
-
-
Lin, C.S.1
Sun, Y.L.2
Liu, C.Y.3
-
25
-
-
0037438993
-
Bacteriological and genetic assessment of game meat from Japanese wild boars
-
Y. Naya M. Horiuchi N. Ishiguro M. Shinagawa 2003 Bacteriological and genetic assessment of game meat from Japanese wild boars J. Agric. Food. Chem. 51 345 349
-
(2003)
J. Agric. Food. Chem.
, vol.51
, pp. 345-349
-
-
Naya, Y.1
Horiuchi, M.2
Ishiguro, N.3
Shinagawa, M.4
-
27
-
-
0034091232
-
The current state of Korean paleoanthropology
-
C.J. Norton 2000 The current state of Korean paleoanthropology J. Hum. Evol. 38 803 825
-
(2000)
J. Hum. Evol.
, vol.38
, pp. 803-825
-
-
Norton, C.J.1
-
28
-
-
0029798885
-
Geographic population structure and sequence divergence in the mitochondrial DNA control region of the Japanese wild boar (Sus scrofa leucomystax), with reference to those of domestic pigs
-
N. Okumura N. Ishiguro M. Nakano K. Hirai A. Matsui M. Sahara 1996 Geographic population structure and sequence divergence in the mitochondrial DNA control region of the Japanese wild boar (Sus scrofa leucomystax), with reference to those of domestic pigs Biochem. Genet. 34 179 189
-
(1996)
Biochem. Genet.
, vol.34
, pp. 179-189
-
-
Okumura, N.1
Ishiguro, N.2
Nakano, M.3
Hirai, K.4
Matsui, A.5
Sahara, M.6
-
29
-
-
0000621581
-
Genetic evidence for a Pleistocene population explosion
-
A. Rogers 1995 Genetic evidence for a Pleistocene population explosion Evolution 49 608 615
-
(1995)
Evolution
, vol.49
, pp. 608-615
-
-
Rogers, A.1
-
30
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
F. Ronquist J.P. Huelsenbeck 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 1572 1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
32
-
-
0001873572
-
Systematics and evolution of the pig
-
M.F. Rothschild, and A. Ruvinsky, eds. (Oxfordshire, CAB International
-
Ruvinsky, A., and Rothschild, M.F. (1998). Systematics and evolution of the pig. In Handbook of The Genetics of the Pig, M.F. Rothschild, and A. Ruvinsky, eds. (Oxfordshire, CAB International), pp. 1-16.
-
(1998)
In Handbook of the Genetics of the Pig
, pp. 1-16
-
-
Ruvinsky, A.1
Rothschild, M.F.2
-
33
-
-
0032814604
-
Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
-
S. Schneider L. Excoffier 1999 Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA Genetics 152 1079 1089
-
(1999)
Genetics
, vol.152
, pp. 1079-1089
-
-
Schneider, S.1
Excoffier, L.2
-
35
-
-
0002671410
-
Some probabilistic and statisical problems on the analysis of DNA sequences
-
S. Tavare 1986 Some probabilistic and statisical problems on the analysis of DNA sequences Lectures. Lect. Math. Life. Sci. 17 57 86
-
(1986)
Lectures. Lect. Math. Life. Sci.
, vol.17
, pp. 57-86
-
-
Tavare, S.1
-
36
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J.D. Thompson D.G. Higgins T.I. Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 4673 4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.I.3
-
37
-
-
2642533681
-
Phylogeography and population structure of the Japanese wild boar Sus scrofa leucomystax: Mitochondrial DNA variation
-
T. Watanobe N. Ishiguro M. Nakano 2003 Phylogeography and population structure of the Japanese wild boar Sus scrofa leucomystax: mitochondrial DNA variation Zoolog. Sci. 20 1477 1489
-
(2003)
Zoolog. Sci.
, vol.20
, pp. 1477-1489
-
-
Watanobe, T.1
Ishiguro, N.2
Nakano, M.3
-
38
-
-
2642526307
-
Prehistoric Sado Island populations of Sus scrofa distinguished from contemporary Japanese wild boar by ancient mitochondrial DNA
-
T. Watanobe N. Ishiguro M. Nakano A. Matsui H. Hongo K. Yamazaki O. Takahashi 2004 Prehistoric Sado Island populations of Sus scrofa distinguished from contemporary Japanese wild boar by ancient mitochondrial DNA Zoolog. Sci. 21 219 228
-
(2004)
Zoolog. Sci.
, vol.21
, pp. 219-228
-
-
Watanobe, T.1
Ishiguro, N.2
Nakano, M.3
Matsui, A.4
Hongo, H.5
Yamazaki, K.6
Takahashi, O.7
-
39
-
-
72949094542
-
Genetic data analysis II: Methods for discrete population genetic data
-
Weir, B.S. (1996). Genetic data analysis II: methods for discrete population genetic data. Sinauer Associates.
-
(1996)
Sinauer Associates.
-
-
Weir, B.S.1
-
40
-
-
0034848170
-
DAMBE: Software package for data analysis in molecular biology and evolution
-
X. Xia Z. Xie 2001 DAMBE: software package for data analysis in molecular biology and evolution J. Hered. 92 371 373
-
(2001)
J. Hered.
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
41
-
-
0142126317
-
Genetic diversity present within the near-complete mtDNA genome of 17 breeds of indigenous Chinese pigs
-
J. Yang J. Wang J. Kijas B. Liu H. Han M. Yu H. Yang S. Zhao K. Li 2003 Genetic diversity present within the near-complete mtDNA genome of 17 breeds of indigenous Chinese pigs J. Hered. 94 381 385
-
(2003)
J. Hered.
, vol.94
, pp. 381-385
-
-
Yang, J.1
Wang, J.2
Kijas, J.3
Liu, B.4
Han, H.5
Yu, M.6
Yang, H.7
Zhao, S.8
Li, K.9
|