The phylogeny of Chinese indigenous pig breeds inferred from microsatellite markers

Animal Genetics

Volumn 36, Issue 1, 2005, Pages 7-13

  Fang, M ^a   Hu, X ^a   Jiang, T ^c   Braunschweig, M ^b   Hu, L ^a   Du, Z ^a   Feng, J ^a   Zhang, Q ^a   Wu, C ^a   Li, N ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c ZHEJIANG UNIVERSITY   (China)

Author keywords

Chinese pig breeds; Genetic distance; Microsatellite; Phylogeny

Indexed keywords

DNA; MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; CHINA; CLASSIFICATION; GENE FREQUENCY; GENETICS; HETEROZYGOTE DETECTION; ISOLATION AND PURIFICATION; MALE; PHYLOGENY; POLYMERASE CHAIN REACTION; SWINE;

ALLELES; ANIMALS; CHINA; DNA; GENE FREQUENCY; HETEROZYGOTE DETECTION; MALE; MICROSATELLITE REPEATS; PHYLOGENY; POLYMERASE CHAIN REACTION; SWINE;

SUS SCROFA; SUS SCROFA DOMESTICA;

EID: 20844437233     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2004.01234.x     Document Type: Article

References (23)

1. Bökönyi S. (1974) History of Domestic Mammals in Central and Eastern Europe. Akademiai Kiado, Budapest, Hungary.
2. Chen W., Wang Z. & Wang X. (1993) Pig Chromosomes of China. Sichuan University Press, Chengdu, China, 101 pp.
3. Darwin C. (1868) The Variation of Animals and Plants under Domestication. John Murry, London, UK.
4. Fan B., Wang Z.G., Li Y.J. et al. (2002) Genetic variation analysis within and among Chinese indigenous swine populations using microsatellite markers. Animal Genetics 33, 422-7.
5. Giuffra E., Kijas J.M.H., Amarger V. et al. (2000) The origin of the domestic pig: independent domestication and subsequent introgression. Genetics 154, 1785-91.
6. Goldstein D.B., Linares A.R., Cavalli-Sforza L.L. & Feldman M.W. (1995) Genetic absolute dating based on microsatellites and the origin of modern humans. Proceedings of the National Academy of Sciences of the United States of America 92, 6723-7.
7. Hu W., Lian L., Su B. et al. (1998) Genetic diversity of Yunan local pig breeds inferred from blood protein electrophoresis. Biochemical Genetics 36, 207-12.
8. Huang Y.F., Shi X.W. & Zhang Y.P. (1999) Mitochondrial genetic variation in Chinese pigs and wild boars. Biochemical Genetics 37, 335-43.
9. Jones G.F. (1998) Genetic aspects of domestication common breeds and their origin. In: The Genetics of the Pig (Ed. by A. Ruvinsky & M.F. Rothschild), pp. 17-50. CAB International, Oxon, UK.
10. Kijas J.M.H. & Andersson L. (2001) A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome. Journal of Molecular Evolution 52, 302-8.
11. Kim K.I., Lee I.H., Li K., Zhang Y.P., Lee S.S., Gongora J. & Moran C. (2002) Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism. Animal Genetics 33, 19-25.
12. May B., Kruger C. & Eng W. (1995) Genes in Population. Version 2. A Computer Program for Analysis of Genetic Data. Cornell Laboratory for Ecological and Evolutionary Genetics. Cornell University, NY, USA.
13. Nei M. (1972) Genetic distance between populations. American Naturalist 106, 283-92.
14. Nei M., Tajima F. & Tateno Y. (1983) Accuracy of estimated phylogenetic trees from molecular data: II. Gene frequency data. Journal of Molecular Evolution 19, 153-70.
15. Ota T. (1993) DISPAN: Genetic Distance and Phylogenetic Analysis. Institute of molecular evolutionary genetics. The Pennsylvania State University, University Park, PA, USA.
16. Ruiz-Linares A. (1994) Analysis of classical and DNA markers for reconstructing human population history. In: The origin and past of modern humans as viewed from DNA (Ed. by S. Brenner & K. Hanihara), pp. 123-48. World Scientific, Singapore.
17. Rzhetsky A. & Nei M. (1992) Statistical properties of the ordinary least-squares. Generalized least-square, and minimum-evolution methods of phylogenetic inference. Journal of Molecular Evolution 35, 367-75.
18. Saitou N. & Imanishi T. (1989) Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum-evolution, and neighbor-joining methods of phylogenetic construction on obtaining the correct tree. Molecular Biology and Evolution 6, 514-25.
19. Shriver M.D., Jin L., Chakraborty R. & Boerwinkle E. (1993) VNTR allele frequency distributions under the stepwise mutation model: a computer simulation approach. Genetics 134, 983-93.
20. Yang J., Wang I., Kijas J. et al. (2003a) Genetic diversity present within the near-complete mtDNA genome of 17 breeds of indigenous Chinese pigs. Journal of Heredity 94, 381-7.
21. Yang S.L., Wang Z.G., Liu B., Zhang G.X., Zhao S.H., Yu M., Fan B., Li M.H., Xiong T.A. & Li K. (2003b) Genetic variation and relationships of eighteen Chinese indigenous pig breeds. Genetic Selection Evolution 35, 657-71.
22. Zhang G.X., Wang Z.G., Sun F.Z. et al. (2003) Genetic diversity of microsatellite loci in fifty-six Chinese native pig breeds. Yi Chuan Xue Bao 30, 225-33.
23. Zhang Z. (Chief Editor) (1986) Pig Breeds in China. Shanghai Scientific and Technical Publishers, Shanghai, China. 235 pp.