Variation in mitochondrial DNA of Vietnamese pigs: Relationships with Asian domestic pigs and Ryukyu wild boars

Zoological Science

Volumn 19, Issue 11, 2002, Pages 1329-1335

  Hongo, Hitomi ^a   Ishiguro, Naotaka ^b   Watanobe, Takuma ^b   Shigehara, Nobuo ^a   Anezaki, Tomoko ^c   The Long, Vu ^d   Vu Binh, Dang ^e   Trong Tien, Nguyen ^e   Huu Nam, Nguyen ^e  

^a KYOTO UNIVERSITY   (Japan)

^b OBIHIRO UNIVERSITY OF AGRICULTURE AND VETERINARY MEDICINE   (Japan)

^c KEIO UNIVERSITY   (Japan)

^d Institute of Archaeology   (Viet Nam)

^e VIETNAM NATIONAL UNIVERSITY OF AGRICULTURE   (Viet Nam)

Author keywords

Genetic variation; Mitochondrial DNA; Phylogeography; Ryukyu wild boar; Sus scrofa

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; ASIA; BODY CONSTITUTION; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; HISTOLOGY; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SKULL; SWINE; VIET NAM;

ANIMALS; ASIA; BASE SEQUENCE; BODY CONSTITUTION; DNA, MITOCHONDRIAL; HAPLOTYPES; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SKULL; SWINE; VARIATION (GENETICS); VIETNAM;

ANIMALIA; MAMMALIA; RYUKYU; SUS; SUS SCROFA; SUS SCROFA DOMESTICA;

EID: 0036879893     PISSN: 02890003     EISSN: None     Source Type: Journal    
DOI: 10.2108/zsj.19.1329     Document Type: Article

References (28)

1. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
2. Felsenstein J (1995) PHYLIP Version 3.572. Eqecutables for PowerMac. University of Washington, Seattle
3. Flannery KV (1983) Early pig domestication in the fertile crescent: A retrospective look. In "The Hilly Flanks and Beyond: Essays on the Prehistory of Southwestern Asia". Eds by TC Young, Jr, PEL Smith, P Mortensen, Studies in Ancient Oriental Civilization, Vol. 36, Orient Inst Univ Chicago, Chicago, pp 163-188
4. Giuffra E, Kijas JMH, Amarger V, Carlbory O, Jeon J-T, Anderson L (2000) The origin of the domestic pig: Independent domestication and subsequent introgression. Genetics 154: 1785-1791
5. Herre W, Rohrs M (1977) Zoological considerations on the origins of farming and domestication. In "Origins of Agriculture" Ed by CA Reed, Mouton, The Hague, pp 245-279
6. Hayashida S (1960) Studies on wild boar and dog found at shellmounds in the Amami-Oshima Archipelago. Anthropol Soc Nippon 68: 96-115 (in Japanese with English summary)
7. Hongo H, Meadow RH (1998) Pig exploitation at neolithic Çayönü Tepesi (southeastern Anatolia). In "Ancestors for the Pigs: Pigs in Prehistory" Ed by SM Nelson, MASCA Research Papers in Science and Archaeology 15, Univ Mus Univ Pennsylvania, Philadelphia, pp 77-98
8. Imaizumi Y (1973) Taxonomic study of the wild boar from the Ryukyu Islands, Japan. Nat Sci Mus Report 6: 113-129 (in Japanese with English summary)
9. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequence. J Mol Evol 16: 111-120
10. Kizaki K, Ohshiro H (1980) The origin of the Ryukyu Islands. In "Natural History of the Ryukyu", Tsukiji Shokan, Tokyo, pp 8-37
11. Kumar S, Tamura K, Nei M (1993) MEGA: Molecular evolutionary genetic analysis. Pennsylvania State University, University Park, PA
12. Kurosawa Y, Tanaka K (1988) Electrophoretic variants of serum transferrin in wild pig populations of Japan. Anim Genet 19: 31-35
13. Kurosawa Y, Tanaka K, Okuda Y, Namikawa T, Yamamoto Y, Hung H Q, Binh D V (1998) Electrophoretic variations of serum amylase-1 (Am-1) in native domestic pigs of Vietnam. Rep. Soc. Res. Native Livestock 16: 85-90
14. Kurosawa Y, Tanaka K, Suzuki S, Oishi T (1984) Variations of blood groups observed in wild pig populations in Japan. Jpn J Zootech Sci 55: 209-212
15. Lan H, Shi L (1993) The origin and genetic differentiation of native breeds of pigs in southwest China: An approach from mitochondrial DNA polymorphism. Biochem Genetics 31: 51-60
16. Naora N (1937) On the pig in the prehistoric age of Japan. Anthropol Soc Tokyo 90: 286-296 (in Japanese)
17. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York
18. Saltou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
19. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN ver 2000 A software for population genetics data analysis. University of Geneva, Geneva
20. Semba T (1960) On the bones of wild boar from the Shimotabaru Shell-mound in the Haderuma Island, Loochoo Islands. Quart J Anthropol 7: 57-60 (in Japanese with English summary)
21. Ursing BM, Arnason U (1998) The complete mitochondrial DNA sequence of the pig (Sus Scrofa). J Mol Evol 47: 302-306
22. Ujiie H (1986) Sea bottom of the Ryukyu Arc-Bottom material and geology. Shinsei Tosho, Naha (in Japanese)
23. Ujiie H, Saito Y (1974) Holocene geological history and biological geography of the Ryukyu Isalnds. Shizen Kagaku to Hakubutukan 41: 131-139 (in Japanese)
24. Watanabe T, Hayashi Y, Ogasawara N, Tomita T (1985) Polymorphism of mitochondrial DNA in pigs based on restriction endonuclease cleavage patterns. Biochem. Genet. 23: 105-114
25. Watanobe T, Ishiguro N, Okumura N, Nakano M, Matsui A, Hongo H, Ushiro H (2001) Ancient mitochondrial DNA reveals the origin of Sus scrofa from Rebun Island, Japan. J Mol Evol 52: 281-289.
26. Watanobe T, Okumura N, Ishiguro N, Nakano M, Matsui A, Sahara M, Komatsu M (1999) Genetic relationship and distribution of the Japanese wild boar (Sus scrofa leucomystax) and Ryukyu wild boar (Sus scrofa riukiuanus) analyzed by mitochondrial DNA. Mol Ecol 8: 1509-1512
27. Xu Z Y (1950) The Animal Husbandry of China, Shanghai Yongxiang, Shanghai
28. Yamamoto Y, Tsunoda, K, Isobe N (1998) Report of the research of animal resources in Vietnam. Rep Soc Res Nativ Livestock 16: 13-32 (in Japanese)