Prehistoric sado island populations of Sus scrofa distinguished from contemporary Japanese wild boar by ancient mitochondrial DNA

Zoological Science

Volumn 21, Issue 2, 2004, Pages 219-228

  Watanobe, Takuma ^a   Ishiguro, Naotaka ^a   Nakano, Masuo ^a   Matsui, Akira ^b   Hongo, Hitomi ^c   Yamazaki, Kiyomi ^d   Takahashi, Osamu ^e  

^a OBIHIRO UNIVERSITY OF AGRICULTURE AND VETERINARY MEDICINE   (Japan)

^b National Institutes for Cultural Heritage   (Japan)

^c KYOTO UNIVERSITY   (Japan)

^d Iwaki Junior College   (Japan)

^e Chitose Salmon Aquarium/Museum   (Japan)

Author keywords

Ancient DNA; Japanese Archipelago; Mitochondrial DNA; Molecular phylogeny; Sus scrofa

Indexed keywords

MAMMALIA; SUS; SUS SCROFA;

MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; BONE; CHEMISTRY; COMPARATIVE STUDY; DNA SEQUENCE; FOSSIL; GENETICS; GEOGRAPHY; JAPAN; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SWINE;

ANIMALS; BASE SEQUENCE; BONE AND BONES; DNA PRIMERS; DNA, MITOCHONDRIAL; FOSSILS; GEOGRAPHY; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SPECIES SPECIFICITY; SUS SCROFA;

EID: 2642526307     PISSN: 02890003     EISSN: None     Source Type: Journal    
DOI: 10.2108/zsj.21.219     Document Type: Article

References (25)

1. Anezaki T (2003) Changes in dental size of prehistoric pig populations in Japan. Zooarchaeology 20: 23-39 (in Japanese with English abstract)
2. Fujita M, Kawamura Y, Murase N (2000) Middle Pleistocene wild boar remains from NT cave, Niimi, Okayama prefecture, west Japan. J Geosci Osaka City Univ 43: 57-93
3. Giuffra E, Kijas JMH, Amarger V, Carlborg Ö, Jeon JT, Andersson L (2000) The origin of the domestic pig: independent domestication and subsequent introgression. Genetics 154: 1785-1791
4. Hardy C, Callou C, Vigne JD, Casane D, Dennebouy N, Mounolou JC, Monnerot M (1995) Rabbit mitochondrial DNA diversity from prehistoric to modern times. J Mol Evol 40: 227-237
5. Hofreiter M, Serre D, Poinar HN, Huch M, Pääbo S (2001) Ancient DNA. Nature Rev 2: 353-359
6. Kawamura Y (1982) Biogeographical aspects of the Quaternary mammals of Japan. Honyurui Kagaku 43-44: 99-130 (in Japanese)
7. Kawamura Y (1991) Quaternary mammalian faunas in the Japanese Islands. Quat Res 30: 213-220
8. Kijas JMH, Andersson L (2001) A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome. J Mol Evol 52: 302-308
9. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequence. J Mol Evol 16: 111-120
10. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245
11. Morii Y, Ishiguro N, Watanobe T, Nakano M, Hongo H, Matsui A, Nishimoto T (2002) Ancient DNA reveals genetic lineage of Sus scrofa among archaeological sites in Japan. Anthropol Sci 110: 313-328
12. Nei M (1987) Molecular Evolutionary Genetics. Columbia Univ Press, New York
13. Nishimoto T (1995) Differences of concept of animals between the Jomon people and the Yayoi people. Bulletin of the National Museum of Japanese History 61: 73-86 (in Japanese with English abstract)
14. Ohdachi S, Dokuchaev NE, Hasegawa M, Masuda R (2001) Intraspecific phylogeny and geographical variation of six species of northeastern Asiatic Sorex shrews based on the mitochondrial cytochrome b sequences. Mol Ecol 10: 2199-2213
15. Ohshima K (1990) The history of straits around the Japanese islands in the Late-Quaternary. Quat Res 29: 193-208 (in Japanese with English abstract)
16. Okumura N, Ishiguro N, Nakano M, Hirai K, Matsui A, Sahara M (1996) Geographic population structure and sequence divergence in the mitochondrial DNA control region of the Japanese wild boar (Sus scrofa leucomystax), with reference to those of domestic pigs. Biochem Genet 34: 179-189
17. Okumura N, Ishiguro N, Nakano M, Matsui A, Shigehara N, Nishimoto T, Sahara M (1999) Variations in mitochondrial DNA of dogs isolated from archaeological sites in Japan and neighbouring islands. Anthropol Sci 107: 213-228
18. Okumura N, Kurosawa Y, Kobayashi E, Watanobe T, Ishiguro N, Yasue H, Mitsuhashi T (2001) Genetic relationship amongst the major non-coding regions of mitochondrial DNAs in wild boars and several breeds of domestic pigs. Anim Genet 32: 139-147
19. Ruvinsky A, Rothschild MF (1998) Systematics and evolution of the pig. In "The Genetics of the Pig" Ed by MF Rothschild and A Ruvinsky, CAB Internatl, Oxon, pp 1-16
20. Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
21. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN ver 2.000 A software for population genetics data analysis. Univ Geneva, Geneva
22. Watanobe T, Ishiguro N, Nakano M (2003) Phylogeography and population structure of the Japanese wild boar Sus scrofa leucomystax: Mitochondrial DNA variation. Zool Sci 20: 1477-1489
23. Watanobe T, Ishiguro N, Nakano M, Takamiya H, Matsui A, Hongo H (2002) Prehistoric Introduction of Domestic Pigs onto the Okinawa Islands: Ancient Mitochondrial DNA Evidence. J Mol Evol 55: 222-231
24. Watanobe T, Ishiguro N, Okumura N, Nakano M, Matsui A, Hongo H, Ushiro H (2001) Ancient mitochondrial DNA reveals the origin of Sus scrofa from Rebun Island, Japan. J Mol Evol 52: 281-289
25. Watanobe T, Okumura N, Ishiguro N, Nakano M, Matsui A, Sahara M, Komatsu M (1999) Genetic relationship and distribution of the Japanese wild boar (Sus scrofa leucomystax) and Ryukyu wild boar (Sus scrofa riukiuanus) analyzed by mitochondrial DNA. Mol Ecol 8: 1509-1512