-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 21: 2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
2342467942
-
Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major
-
Akopyants NS, Matlib RS, Bukanova EN, Smeds MR, Brownstein BH, Stormo GD, Beverley SM. 2004. Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major. Mol Biochem Parasitol. 136:71-86.
-
(2004)
Mol Biochem Parasitol
, vol.136
, pp. 71-86
-
-
Akopyants, N.S.1
Matlib, R.S.2
Bukanova, E.N.3
Smeds, M.R.4
Brownstein, B.H.5
Stormo, G.D.6
Beverley, S.M.7
-
3
-
-
67349224641
-
Genome-wide analysis reveals increased levels of transcripts related with infectivity in peanut lectin non-agglutinated promastigotes of Leishmania infantum
-
Alcolea PJ, Alonso A, Sánchez-Gorostiaga A, Moreno-Paz M, Gómez MJ, Ramos I, Parro V, Larraga V. 2009. Genome-wide analysis reveals increased levels of transcripts related with infectivity in peanut lectin non-agglutinated promastigotes of Leishmania infantum. Genomics. 93:551-564.
-
(2009)
Genomics
, vol.93
, pp. 551-564
-
-
Alcolea, P.J.1
Alonso, A.2
Sánchez-Gorostiaga, A.3
Moreno-Paz, M.4
Gómez, M.J.5
Ramos, I.6
Parro, V.7
Larraga, V.8
-
4
-
-
2342544007
-
Expression profiling of the Leishmania life cycle: CDNA arrays identify developmentally regulated genes present but not annotated in the genome
-
15 co-authors
-
Almeida R, Gilmartin BJ, McCann SH, et al. (15 co-authors). 2004. Expression profiling of the Leishmania life cycle: cDNA arrays identify developmentally regulated genes present but not annotated in the genome. Mol Biochem Parasitol. 136: 87-100.
-
(2004)
Mol Biochem Parasitol
, vol.136
, pp. 87-100
-
-
Almeida, R.1
Gilmartin, B.J.2
McCann, S.H.3
-
5
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
Anisimova M, Gascuel O. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol. 55:539-552.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
6
-
-
33646146732
-
The rise and fall of sleeping sickness
-
Barrett MP. 2006. The rise and fall of sleeping sickness. Lancet. 367:1377-1378.
-
(2006)
Lancet
, vol.367
, pp. 1377-1378
-
-
Barrett, M.P.1
-
7
-
-
23944497781
-
Messenger RNA processing sites in Trypanosoma brucei
-
Benz C, Nilsson D, Andersson B, Clayton C, Guilbride DL. 2005. Messenger RNA processing sites in Trypanosoma brucei. Mol Biochem Parasitol. 143:125-134.
-
(2005)
Mol Biochem Parasitol
, vol.143
, pp. 125-134
-
-
Benz, C.1
Nilsson, D.2
Andersson, B.3
Clayton, C.4
Guilbride, D.L.5
-
8
-
-
22244441812
-
The genome of the African trypanosome Trypanosoma brucei
-
102 co-authors
-
Berriman M, Ghedin E, Hertz-Fowler C, et al. (102 co-authors). 2005. The genome of the African trypanosome Trypanosoma brucei. Science. 309:416-422.
-
(2005)
Science
, vol.309
, pp. 416-422
-
-
Berriman, M.1
Ghedin, E.2
Hertz-Fowler, C.3
-
9
-
-
0142119484
-
Viewing and annotating sequence data with Artemis
-
Berriman M, Rutherford K. 2003. Viewing and annotating sequence data with Artemis. Brief Bioinform. 4:124-132.
-
(2003)
Brief Bioinform
, vol.4
, pp. 124-132
-
-
Berriman, M.1
Rutherford, K.2
-
10
-
-
0037205486
-
A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3#-untranslated region element
-
Boucher N, Wu Y, Dumas C, Dube M, Sereno D, Breton M, Papadopoulou B. 2002. A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3#-untranslated region element. J Biol Chem. 277: 19511-19520.
-
(2002)
J Biol Chem
, vol.277
, pp. 19511-19520
-
-
Boucher, N.1
Wu, Y.2
Dumas, C.3
Dube, M.4
Sereno, D.5
Breton, M.6
Papadopoulou, B.7
-
11
-
-
38149099329
-
Characterisation of the plasma membrane subproteome of bloodstream form Trypa-nosoma brucei
-
Bridges DJ, Pitt AR, Hanrahan O, Brennan K, Voorheis HP, Herzyk P, de Koning HP, Burchmore RJ. 2008. Characterisation of the plasma membrane subproteome of bloodstream form Trypa-nosoma brucei. Proteomics. 8:83-99.
-
(2008)
Proteomics
, vol.8
, pp. 83-99
-
-
Bridges, D.J.1
Pitt, A.R.2
Hanrahan, O.3
Brennan, K.4
Voorheis, H.P.5
Herzyk, P.6
De Koning, H.P.7
Burchmore, R.J.8
-
12
-
-
0028266113
-
African trypanosome glucose transporter genes: Organization and evolution of a multigene family
-
Bringaud F, Baltz T. 1994. African trypanosome glucose transporter genes: organization and evolution of a multigene family. Mol Biol Evol. 11:220-230.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 220-230
-
-
Bringaud, F.1
Baltz, T.2
-
13
-
-
34848913443
-
Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania
-
Bringaud F, Müller M, Cerqueira GC, Smith M, Rochette A, El-Sayed NM, Papadopoulou B, Ghedin E. 2007. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania. PLoS Pathog. 3:1291-1307.
-
(2007)
PLoS Pathog
, vol.3
, pp. 1291-1307
-
-
Bringaud, F.1
Müller, M.2
Cerqueira, G.C.3
Smith, M.4
Rochette, A.5
El-Sayed, N.M.6
Papadopoulou, B.7
Ghedin, E.8
-
14
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
Bruen TC, Philippe H, Bryant D. 2006. A simple and robust statistical test for detecting the presence of recombination. Genetics. 172:2665-2681.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
15
-
-
0242402131
-
Transcription in kinetoplastid protozoa: Why be normal?
-
Campbell DA, Thomas S, Sturm NR. 2003. Transcription in kinetoplastid protozoa: why be normal? Microbes Infect. 5:1231-1240.
-
(2003)
Microbes Infect
, vol.5
, pp. 1231-1240
-
-
Campbell, D.A.1
Thomas, S.2
Sturm, N.R.3
-
16
-
-
0034697014
-
Amastin mRNA abundance in Trypanosoma cruzi is controlled by a 3#-untranslated region position-dependent cis-element and an untranslated region-binding protein
-
Coughlin BC, Teixeira SM, Kirchhoff LV, Donelson JE. 2000. Amastin mRNA abundance in Trypanosoma cruzi is controlled by a 3#-untranslated region position-dependent cis-element and an untranslated region-binding protein. J Biol Chem. 275:12051-12060.
-
(2000)
J Biol Chem
, vol.275
, pp. 12051-12060
-
-
Coughlin, B.C.1
Teixeira, S.M.2
Kirchhoff, L.V.3
Donelson, J.E.4
-
17
-
-
33750115294
-
Proteo-mic analysis of antigens from Leishmania infantum promasti-gotes
-
Dea-Ayuela MA, Rama-Iñiguez S, Bolás-Fernández F. 2006. Proteo-mic analysis of antigens from Leishmania infantum promasti-gotes. Proteomics. 6:4187-4194.
-
(2006)
Proteomics
, vol.6
, pp. 4187-4194
-
-
Dea-Ayuela, M.A.1
Rama-Iñiguez, S.2
Bolás-Fernández, F.3
-
18
-
-
22244453726
-
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease
-
82 co-authors
-
El-Sayed NM, Myler PJ, Bartholomeu DC, et al. (82 co-authors). 2005. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science. 309:409-415.
-
(2005)
Science
, vol.309
, pp. 409-415
-
-
El-Sayed, N.M.1
Myler, P.J.2
Bartholomeu, D.C.3
-
19
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H. 2007. Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc. 2:953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
20
-
-
0026544709
-
Genomic organisation and expression of a differentially-regulated gene family from Leishmania major
-
Flinn HM, Smith DF. 1992. Genomic organisation and expression of a differentially-regulated gene family from Leishmania major. Nucleic Acids Res. 20:755-762.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 755-762
-
-
Flinn, H.M.1
Smith, D.F.2
-
21
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
22
-
-
41149170097
-
Deadenylation-independent stage-specific mRNA degradation in Leishmania
-
Haile S, Dupé A, Papadopoulou B. 2008. Deadenylation-independent stage-specific mRNA degradation in Leishmania. Nucleic Acids Res. 36:1634-1644.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1634-1644
-
-
Haile, S.1
Dupé, A.2
Papadopoulou, B.3
-
23
-
-
33644828887
-
Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana
-
Holzer TR, McMaster WR, Forney JD. 2006. Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana. Mol Biochem Parasitol. 146:198-218.
-
(2006)
Mol Biochem Parasitol
, vol.146
, pp. 198-218
-
-
Holzer, T.R.1
McMaster, W.R.2
Forney, J.D.3
-
24
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
25
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254-267.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
26
-
-
0023665133
-
Transcription of the intergenic regions of the tubulin gene cluster of Trypanosoma brucei: Evidence for a polycistronic transcription unit in a eukaryote
-
Imboden MA, Laird PW, Affolter M, Seebeck T. 1987. Transcription of the intergenic regions of the tubulin gene cluster of Trypanosoma brucei: evidence for a polycistronic transcription unit in a eukaryote. Nucleic Acids Res. 15:7357-7368.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 7357-7368
-
-
Imboden, M.A.1
Laird, P.W.2
Affolter, M.3
Seebeck, T.4
-
27
-
-
22244437571
-
The genome of the kinetoplastid parasite, Leishmania major
-
102 co-authors
-
Ivens AC, Peacock CS, Worthey EA, et al. (102 co-authors). 2005. The genome of the kinetoplastid parasite, Leishmania major. Science. 309:436-442.
-
(2005)
Science
, vol.309
, pp. 436-442
-
-
Ivens, A.C.1
Peacock, C.S.2
Worthey, E.A.3
-
28
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer ELL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol. 305:567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.L.4
-
30
-
-
33846202033
-
Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: The Leishmania genome is constitutively expressed
-
Leifso K, Cohen-Freue G, Dogra N, Murray A, McMaster WR. 2007. Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed. Mol Biochem Parasitol. 152:35-46.
-
(2007)
Mol Biochem Parasitol
, vol.152
, pp. 35-46
-
-
Leifso, K.1
Cohen-Freue, G.2
Dogra, N.3
Murray, A.4
McMaster, W.R.5
-
31
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart PJ, Steel MA, Hendy MD, Penny D. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol. 11:605-612.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
32
-
-
27444434267
-
Distinct 3#-untranslated region elements regulate stage-specific mRNA accumulation and translation in Leishmania
-
McNicoll F, Müller M, Cloutier S, Boilard N, Rochette A, Dubé M, Papadopoulou B. 2005. Distinct 3#-untranslated region elements regulate stage-specific mRNA accumulation and translation in Leishmania. J Biol Chem. 280:35238-35246.
-
(2005)
J Biol Chem
, vol.280
, pp. 35238-35246
-
-
McNicoll, F.1
Müller, M.2
Cloutier, S.3
Boilard, N.4
Rochette, A.5
Dubé, M.6
Papadopoulou, B.7
-
33
-
-
58049218990
-
TOPALi v2: A rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
-
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
-
(2009)
Bioinformatics
, vol.25
, pp. 126-127
-
-
Milne, I.1
Lindner, D.2
Bayer, M.3
Husmeier, D.4
McGuire, G.5
Marshall, D.F.6
Wright, F.7
-
34
-
-
0042328074
-
Microarray profiling of gene expression during trypomastigote to amastigote transition in Trypanosoma cruzi
-
Minning TA, Bua J, Garcia GA, McGraw RA, Tarleton RL. 2003. Microarray profiling of gene expression during trypomastigote to amastigote transition in Trypanosoma cruzi. Mol Biochem Parasitol. 131:55-64.
-
(2003)
Mol Biochem Parasitol
, vol.131
, pp. 55-64
-
-
Minning, T.A.1
Bua, J.2
Garcia, G.A.3
McGraw, R.A.4
Tarleton, R.L.5
-
35
-
-
0029566289
-
Effects of 3' untranslated and intergenic regions on gene expression in Trypanosoma cruzi
-
Nozaki T, Cross GA. 1995. Effects of 3' untranslated and intergenic regions on gene expression in Trypanosoma cruzi. Mol Biochem Parasitol. 75:55-67.
-
(1995)
Mol Biochem Parasitol
, vol.75
, pp. 55-67
-
-
Nozaki, T.1
Cross, G.A.2
-
36
-
-
0028912021
-
Three genes and two isozymes: Gene conversion and the compartmentalization and expression of the phosphoglycerate kinases of Trypanosoma (Nannomonas) congolense
-
Parker HL, Hill T, Alexander K, Murphy NB, Fish WR, Parsons M. 1995. Three genes and two isozymes: gene conversion and the compartmentalization and expression of the phosphoglycerate kinases of Trypanosoma (Nannomonas) congolense. Mol Biochem Parasitol. 69:269-279.
-
(1995)
Mol Biochem Parasitol
, vol.69
, pp. 269-279
-
-
Parker, H.L.1
Hill, T.2
Alexander, K.3
Murphy, N.B.4
Fish, W.R.5
Parsons, M.6
-
37
-
-
34347339518
-
Comparative genomic analysis of three Leishmania species that cause diverse human disease
-
42 co-authors
-
Peacock CS, Seeger K, Harris D, et al. (42 co-authors). 2007. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet. 39:839-847.
-
(2007)
Nat Genet
, vol.39
, pp. 839-847
-
-
Peacock, C.S.1
Seeger, K.2
Harris, D.3
-
38
-
-
14544275616
-
A genetic algorithm approach to detecting lineage-specific variation in selection pressure
-
Pond SL, Frost SD. 2005a. A genetic algorithm approach to detecting lineage-specific variation in selection pressure. Mol Biol Evol. 22:478-485.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 478-485
-
-
Pond, S.L.1
Frost, S.D.2
-
39
-
-
17744395033
-
Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
-
Pond SL, Frost SD. 2005b. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics. 21:2531-2533.
-
(2005)
Bioinformatics
, vol.21
, pp. 2531-2533
-
-
Pond, S.L.1
Frost, S.D.2
-
40
-
-
33745611774
-
Adaptation to different human populations by HIV-1 revealed by codon-based analyses
-
Pond SL, Frost SD, Grossman Z, Gravenor MB, Richman DD, Brown AJ. 2006. Adaptation to different human populations by HIV-1 revealed by codon-based analyses. PLoS Comput Biol. 2:e62.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Pond, S.L.1
Frost, S.D.2
Grossman, Z.3
Gravenor, M.B.4
Richman, D.D.5
Brown, A.J.6
-
41
-
-
33750360882
-
Amastin peptide-binding antibodies as biomarkers of active human visceral leishmaniasis
-
Rafati S, Hassani N, Taslimi Y, Movassagh H, Rochette A, Papadopoulou B. 2006. Amastin peptide-binding antibodies as biomarkers of active human visceral leishmaniasis. Clin Vaccine Immunol. 13:1104-1110.
-
(2006)
Clin Vaccine Immunol
, vol.13
, pp. 1104-1110
-
-
Rafati, S.1
Hassani, N.2
Taslimi, Y.3
Movassagh, H.4
Rochette, A.5
Papadopoulou, B.6
-
42
-
-
14744299083
-
Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp
-
Rochette A, McNicoll F, Girard J, Breton M, Leblanc E, Bergeron MG, Papadopoulou B. 2005. Characterization and developmental gene regulation of a large gene family encoding amastin surface proteins in Leishmania spp. Mol Biochem Parasitol. 140:205-220.
-
(2005)
Mol Biochem Parasitol
, vol.140
, pp. 205-220
-
-
Rochette, A.1
McNicoll, F.2
Girard, J.3
Breton, M.4
Leblanc, E.5
Bergeron, M.G.6
Papadopoulou, B.7
-
43
-
-
60649102005
-
Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum
-
Rochette A, Raymond F, Corbeil J, Ouellette M, Papadopoulou B. 2009. Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum. Mol Biochem Parasitol. 165:32-47.
-
(2009)
Mol Biochem Parasitol
, vol.165
, pp. 32-47
-
-
Rochette, A.1
Raymond, F.2
Corbeil, J.3
Ouellette, M.4
Papadopoulou, B.5
-
44
-
-
47249134311
-
Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species
-
Rochette A, Raymond F, Ubeda JM, Smith M, Messier N, Boisvert S, Rigault P, Corbeil J, Ouellette M, Papadopoulou B. 2008. Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species. BMC Genomics. 9:255.
-
(2008)
BMC Genomics
, vol.9
, pp. 255
-
-
Rochette, A.1
Raymond, F.2
Ubeda, J.M.3
Smith, M.4
Messier, N.5
Boisvert, S.6
Rigault, P.7
Corbeil, J.8
Ouellette, M.9
Papadopoulou, B.10
-
45
-
-
0041386108
-
MrBayes 3: Bayesian phylo-genetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylo-genetic inference under mixed models. Bioinformatics. 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
46
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualization and annotation. Bioinformatics. 16:944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
47
-
-
0029150739
-
A family of putative receptor-adenylate cyclases from Leish-mania donovani
-
Sanchez MA, Zeoli D, Klamo EM, Kavanaugh MP, Landfear SM. 1995. A family of putative receptor-adenylate cyclases from Leish-mania donovani. J Biol Chem. 270:17551-17558.
-
(1995)
J Biol Chem
, vol.270
, pp. 17551-17558
-
-
Sanchez, M.A.1
Zeoli, D.2
Klamo, E.M.3
Kavanaugh, M.P.4
Landfear, S.M.5
-
48
-
-
0037836064
-
Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis
-
Saxena A, Worthey EA, Yan S, Leland A, Stuart KD, Myler PJ. 2003. Evaluation of differential gene expression in Leishmania major Friedlin procyclics and metacyclics using DNA microarray analysis. Mol Biochem Parasitol. 129:103-114.
-
(2003)
Mol Biochem Parasitol
, vol.129
, pp. 103-114
-
-
Saxena, A.1
Worthey, E.A.2
Yan, S.3
Leland, A.4
Stuart, K.D.5
Myler, P.J.6
-
49
-
-
66749156464
-
Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome
-
Smith M, Bringaud F, Papadopoulou B. 2009. Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome. BMC Genomics. 10:240.
-
(2009)
BMC Genomics
, vol.10
, pp. 240
-
-
Smith, M.1
Bringaud, F.2
Papadopoulou, B.3
-
50
-
-
0033369092
-
Genomic organization, transcription, splicing and gene regulation in Leishmania
-
Stiles JK, Hicock PI, Shah PH, Meade JC. 1999. Genomic organization, transcription, splicing and gene regulation in Leishmania. Ann Trop Med Parasitol. 93:781-807.
-
(1999)
Ann Trop Med Parasitol
, vol.93
, pp. 781-807
-
-
Stiles, J.K.1
Hicock, P.I.2
Shah, P.H.3
Meade, J.C.4
-
51
-
-
33344470954
-
From genome to vaccines for leishmaniasis: Screening 100 novel vaccine candidates against murine Leishmania major infection
-
Stober CB, Lange UG, Roberts MT, Gilmartin B, Francis R, Almeida R, Peacock CS, McCann S, Blackwell JM. 2005. From genome to vaccines for leishmaniasis: screening 100 novel vaccine candidates against murine Leishmania major infection. Vaccine. 24:2602-2616.
-
(2005)
Vaccine
, vol.24
, pp. 2602-2616
-
-
Stober, C.B.1
Lange, U.G.2
Roberts, M.T.3
Gilmartin, B.4
Francis, R.5
Almeida, R.6
Peacock, C.S.7
McCann, S.8
Blackwell, J.M.9
-
52
-
-
0035215112
-
Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites
-
Suzuki Y, Nei M. 2001. Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites. Mol Biol Evol. 18:2179-2185.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 2179-2185
-
-
Suzuki, Y.1
Nei, M.2
-
53
-
-
1942533483
-
False-positive selection identified by ML-based methods: Examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus
-
Suzuki Y, Nei M. 2004. False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Mol Biol Evol. 21:914-921.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 914-921
-
-
Suzuki, Y.1
Nei, M.2
-
54
-
-
0029087808
-
Post-transcriptional elements regulating expression of mRNAs from the amastin/ tuzin gene cluster of Trypanosoma cruzi
-
Teixeira SM, Kirchhoff LV, Donelson JE. 1995. Post-transcriptional elements regulating expression of mRNAs from the amastin/ tuzin gene cluster of Trypanosoma cruzi. J Biol Chem. 270: 22586-22594.
-
(1995)
J Biol Chem
, vol.270
, pp. 22586-22594
-
-
Teixeira, S.M.1
Kirchhoff, L.V.2
Donelson, J.E.3
-
55
-
-
0033229952
-
Trypanosoma cruzi: Suppression of tuzin gene expression by its 5#-UTR and spliced leader addition site
-
Teixeira SM, Kirchhoff LV, Donelson JE. 1999. Trypanosoma cruzi: suppression of tuzin gene expression by its 5#-UTR and spliced leader addition site. Exp Parasitol. 93:143-151.
-
(1999)
Exp Parasitol
, vol.93
, pp. 143-151
-
-
Teixeira, S.M.1
Kirchhoff, L.V.2
Donelson, J.E.3
-
56
-
-
0028088476
-
A differentially expressed gene family encoding "amastin," a surface protein of Trypanosoma cruzi amastigotes
-
Teixeira SM, Russell DG, Kirchhoff LV, Donelson JE. 1994. A differentially expressed gene family encoding "amastin," a surface protein of Trypanosoma cruzi amastigotes. J Biol Chem. 1994(269):20509-20516.
-
(1994)
J Biol Chem
, vol.1994
, Issue.269
, pp. 20509-20516
-
-
Teixeira, S.M.1
Russell, D.G.2
Kirchhoff, L.V.3
Donelson, J.E.4
-
57
-
-
0029014312
-
Control of gene expression in trypanosomes
-
Vanhamme L, Pays E. 1995. Control of gene expression in trypanosomes. Microbiol Rev. 59:223-240.
-
(1995)
Microbiol Rev
, vol.59
, pp. 223-240
-
-
Vanhamme, L.1
Pays, E.2
-
58
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 18:691-699.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
59
-
-
0027396504
-
Genomic and transcriptional linkage of the genes for calmodulin, EF-hand 5 protein, and ubiquitin extension protein 52 in Trypanosoma brucei
-
Wong S, Morales TH, Neigel JE, Campbell DA. 1993. Genomic and transcriptional linkage of the genes for calmodulin, EF-hand 5 protein, and ubiquitin extension protein 52 in Trypanosoma brucei. Mol Cell Biol. 13:207-216.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 207-216
-
-
Wong, S.1
Morales, T.H.2
Neigel, J.E.3
Campbell, D.A.4
-
60
-
-
0033727540
-
A new developmentally regulated gene family in Leishmania amasti-gotes encoding a homolog of amastin surface proteins
-
Wu Y, El Fakhry Y, Sereno D, Tamar S, Papadopoulou B. 2000. A new developmentally regulated gene family in Leishmania amasti-gotes encoding a homolog of amastin surface proteins. Mol Biochem Parasitol. 110:345-357.
-
(2000)
Mol Biochem Parasitol
, vol.110
, pp. 345-357
-
-
Wu, Y.1
El Fakhry, Y.2
Sereno, D.3
Tamar, S.4
Papadopoulou, B.5
-
61
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
62
-
-
66149158266
-
Selective recovery of the cultivation-prone components from mixed trypanoso-matid infections: A case of several novel species isolated from Neotropical Heteroptera
-
Yurchenko VY, Lukes J, Jirku M, Maslov D. 2009. Selective recovery of the cultivation-prone components from mixed trypanoso-matid infections: a case of several novel species isolated from Neotropical Heteroptera. Int J Syst Evol Microbiol. 59:893-909.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 893-909
-
-
Yurchenko, V.Y.1
Lukes, J.2
Jirku, M.3
Maslov, D.4
-
63
-
-
34547681436
-
Comparisons of site-and haplotype-frequency methods for detecting positive selection
-
Zeng K, Mano S, Shi S, Wu CI. 2007. Comparisons of site-and haplotype-frequency methods for detecting positive selection. Mol Biol Evol. 24:1562-1574.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1562-1574
-
-
Zeng, K.1
Mano, S.2
Shi, S.3
Wu, C.I.4
-
64
-
-
3042637218
-
Frequent false detection of positive selection by the likelihood method with branch-site models
-
Zhang J. 2004. Frequent false detection of positive selection by the likelihood method with branch-site models. Mol Biol Evol. 21:1332-1339.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1332-1339
-
-
Zhang, J.1
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