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Volumn 131, Issue 50, 2009, Pages 18147-18152

Common folding mechanism of a β-hairpin peptide via non-native turn formation revealed by unbiased molecular dynamics simulations

Author keywords

[No Author keywords available]

Indexed keywords

ATOMISTIC MOLECULAR DYNAMICS; DIRECT TRANSITION; EXPLICIT SOLVENTS; FOLDED STATE; FOLDING MECHANISM; FOLDING PROCESS; FOLDING TIME; MOLECULAR DYNAMICS SIMULATIONS; NON-NATIVE; ROOM TEMPERATURE; SAMPLING TECHNIQUE; SIDE-CHAIN;

EID: 72449194759     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja9064365     Document Type: Article
Times cited : (34)

References (60)
  • 18
    • 72449165605 scopus 로고    scopus 로고
    • note
    • A hairpin is defined here using the classification by Thornton and colleagues (refs 58, 59). The ratio is assigned, depending on whether the end residues of the β-turn are linked by a single or double hydrogen bond. If both hydrogen bonds are formed, then X = Y forming 2:2, 3:3, etc. loops, where X is the number of residues in the loop. If just one hydrogen bond is formed, then Y = X + 2. In the case of Peptide 1, X = 3 and Y = 3 + 2 ) 5, i.e., a single hydrogen bond is formed.
  • 19
    • 72449151895 scopus 로고    scopus 로고
    • note
    • A β-bulge is defined as a region between two consecutive β-type hydrogen bonds which includes two residues on one strand and a single residue on the other strand. The G1 Type β-bulge is a common type of β-bulge (ref 60).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.