-
1
-
-
0032561237
-
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
-
DOI 10.1126/science.282.5389.740
-
Duan Y, Kollman PA (1998) Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. Science 282: 740-744. (Pubitemid 28489385)
-
(1998)
Science
, vol.282
, Issue.5389
, pp. 740-744
-
-
Duan, Y.1
Kollman, P.A.2
-
2
-
-
46049096322
-
Ab Initio Folding of Proteins with All-Atom Discrete Molecular Dynamics
-
DOI 10.1016/j.str.2008.03.013, PII S0969212608001780
-
Ding F, Tsao D, Nie H, Dokholyan NV (2008) Ab initio folding of proteins with all-atom discrete molecular dynamics. Structure 16: 1010-1018. (Pubitemid 351899281)
-
(2008)
Structure
, vol.16
, Issue.7
, pp. 1010-1018
-
-
Ding, F.1
Tsao, D.2
Nie, H.3
Dokholyan, N.V.4
-
3
-
-
17444378255
-
One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution
-
Rhee YM, Pande VS (2005) One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution. J Phys Chem B 109: 6780-6786.
-
(2005)
J Phys Chem B
, vol.109
, pp. 6780-6786
-
-
Rhee, Y.M.1
Pande, V.S.2
-
4
-
-
18744387720
-
Reaction coordinates and rates from transition paths
-
Best RB, Hummer G (2005) Reaction coordinates and rates from transition paths. Proc Natl Acad Sci U S A 102: 6732-6737.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 6732-6737
-
-
Best, R.B.1
Hummer, G.2
-
5
-
-
17544374740
-
Automatic method for identifying reaction coordinates in complex systems
-
DOI 10.1021/jp045546c
-
Ma A, Dinner AR (2005) Automatic method for identifying reaction coordinates in complex systems. J Phys Chem B 109: 6769-6779. (Pubitemid 40552537)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.14
, pp. 6769-6779
-
-
Ma, A.1
Dinner, A.R.2
-
6
-
-
0001563395
-
On the transition coordinate for protein folding
-
Du R, Pande VS, Grosberg AY, Tanaka T, Shakhnovich EI (1998) On the transition coordinate for protein folding. J Chem Phys 108: 334-350.
-
(1998)
J Chem Phys
, vol.108
, pp. 334-350
-
-
Du, R.1
Pande, V.S.2
Grosberg, A.Y.3
Tanaka, T.4
Shakhnovich, E.I.5
-
7
-
-
33745611125
-
Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction
-
DOI 10.1073/pnas.0603553103
-
Das P, Moll M, Stamati H, Kavraki LE, Clementi C (2006) Low-dimensional, free-energy landscapes of protein folding reactions by nonlinear dimensionality reduction. Proc Natl Acad Sci U S A 103: 9885-9890. (Pubitemid 43993592)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.26
, pp. 9885-9890
-
-
Das, P.1
Moll, M.2
Stamati, H.3
Kavraki, L.E.4
Clementi, C.5
-
8
-
-
10844292652
-
Energy landscape of a small peptide revealed by dihedral angle principal component analysis
-
DOI 10.1002/prot.20310
-
Mu Y, Nguyen PH, Stock G (2005) Energy landscape of a small peptide revealed by dihedral angle principle component analysis. Proteins 58: 45-52. (Pubitemid 39665615)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.58
, Issue.1
, pp. 45-52
-
-
Mu, Y.1
Nguyen, P.H.2
Stock, G.3
-
10
-
-
49149121255
-
One-dimensional barrier preserving free energy projections of a β-sheet miniprotein: New insights into the folding process
-
Krivov SV, Muff S, Caflisch A, Karplus M (2008) One-dimensional barrier preserving free energy projections of a β-sheet miniprotein: new insights into the folding process. J Phys Chem B 112: 8701-8714.
-
(2008)
J Phys Chem B
, vol.112
, pp. 8701-8714
-
-
Krivov, S.V.1
Muff, S.2
Caflisch, A.3
Karplus, M.4
-
11
-
-
0037115811
-
Free energy disconnectivity graphs: Application to peptide models
-
Krivov SV, Karplus M (2002) Free energy disconnectivity graphs: application to peptide models. J Chem Phys 117: 10894-10903.
-
(2002)
J Chem Phys
, vol.117
, pp. 10894-10903
-
-
Krivov, S.V.1
Karplus, M.2
-
13
-
-
0000370391
-
The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics
-
Becker OM, Karplus M (1997) The topology of multidimensional potential energy surfaces: theory and application to peptide structure and kinetics. J Chem Phys 106: 1495-1517.
-
(1997)
J Chem Phys
, vol.106
, pp. 1495-1517
-
-
Becker, O.M.1
Karplus, M.2
-
14
-
-
33746567202
-
One-dimensional free-energy profiles of complex systems: Progress variables that preserve the barriers
-
Krivov SV, Karplus M (2006) One-dimensional free-energy profiles of complex systems: progress variables that preserve the barriers. J Phys Chem B 110: 12689-12698.
-
(2006)
J Phys Chem B
, vol.110
, pp. 12689-12698
-
-
Krivov, S.V.1
Karplus, M.2
-
15
-
-
58149144558
-
Free-energy landscapes of proteins in the presence and absence of force
-
Yew ZT, Krivov S, Paci E (2008) Free-energy landscapes of proteins in the presence and absence of force. J Phys Chem B 112: 16902-16907.
-
(2008)
J Phys Chem B
, vol.112
, pp. 16902-16907
-
-
Yew, Z.T.1
Krivov, S.2
Paci, E.3
-
16
-
-
0036308818
-
Thermodynamics and folding kinetics analysis of the SH3 domain form discrete molecular dynamics
-
Borreguero JM, Dokholyan NV, Buldyrev SV, Shakhnovich EI, Stanley HE (2002) Thermodynamics and folding kinetics analysis of the SH3 domain form discrete molecular dynamics. J Mol Biol 318: 863-876.
-
(2002)
J Mol Biol
, vol.318
, pp. 863-876
-
-
Borreguero, J.M.1
Dokholyan, N.V.2
Buldyrev, S.V.3
Shakhnovich, E.I.4
Stanley, H.E.5
-
17
-
-
35148817913
-
Parallel Folding Pathways in the SH3 Domain Protein
-
DOI 10.1016/j.jmb.2007.08.032, PII S0022283607011059
-
Lam AR, Borreguero JM, Ding F, Dokholyan NV, Buldyrev SV, et al. (2007) Parallel folding pathways in the SH3 domain protein. J Mol Biol 373: 1348-1360. (Pubitemid 47539480)
-
(2007)
Journal of Molecular Biology
, vol.373
, Issue.5
, pp. 1348-1360
-
-
Lam, A.R.1
Borreguero, J.M.2
Ding, F.3
Dokholyan, N.V.4
Buldyrev, S.V.5
Stanley, H.E.6
Shakhnovich, E.7
-
18
-
-
18844459862
-
Nucleation and the transition state of the SH3 domain
-
Hubner IA, Shimada J, Shakhnovich EI (2005) Nucleation and the transition state of the SH3 domain. J Mol Biol 349: 424-434.
-
(2005)
J Mol Biol
, vol.349
, pp. 424-434
-
-
Hubner, I.A.1
Shimada, J.2
Shakhnovich, E.I.3
-
19
-
-
0842332830
-
Commitment and Nucleation in the Protein G Transition State
-
DOI 10.1016/j.jmb.2003.12.032
-
Hubner IA, Shimada J, Shakhnovich EI (2004) Commitment and nucleation in the protein G transition state. J Mol Biol 336: 745-761. (Pubitemid 38183026)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.3
, pp. 745-761
-
-
Hubner, I.A.1
Shimada, J.2
Shakhnovich, E.I.3
-
20
-
-
0036927818
-
Direct molecular dynamics observation of protein folding transition state ensemble
-
Ding F, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich EI (2002) Direct molecular dynamics observation of protein folding transition state ensemble. Biophys J 83: 3525-3532. (Pubitemid 36041969)
-
(2002)
Biophysical Journal
, vol.83
, Issue.6
, pp. 3525-3532
-
-
Ding, F.1
Dokholyan, N.V.2
Buldyrev, S.V.3
Stanley, H.E.4
Shakhnovich, E.I.5
-
21
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and 'en-route' intermediates for protein folding? An investigation for small globular proteins
-
DOI 10.1006/jmbi.2000.3693
-
Clementi C, Nymeyer H, Onuchic JN (2000) Topological and energetic factors: what determines the structural details transition state ensemble and "En-route" intermediates for protein investigation for small globular proteins. J Mol Biol 298: 937-953. (Pubitemid 30701006)
-
(2000)
Journal of Molecular Biology
, vol.298
, Issue.5
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
22
-
-
26844536032
-
The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates
-
DOI 10.1073/pnas.0505808102
-
Wilson CJ, Das P, Clementi C, Matthews KS, Wittung-Stafshede P (2005) The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates. Proc Natl Acad Sci U S A 102: 14563-14568. (Pubitemid 41457097)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.41
, pp. 14563-14568
-
-
Wilson, C.J.1
Das, P.2
Clementi, C.3
Matthews, K.S.4
Wittung-Stafshede, P.5
-
23
-
-
26844543506
-
Characterization of the folding landscape of monomeric lactose repressor: Quantitative comparison of theory and experiment
-
DOI 10.1073/pnas.0505844102
-
Das P, Wilson CJ, Fossati G, Wittung-Stafshede P, Matthews KS, et al. (2005) Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment. Proc Natl Acad Sci U S A 102: 14569-14574. (Pubitemid 41457098)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.41
, pp. 14569-14574
-
-
Das, P.1
Wilson, C.J.2
Fossati, G.3
Wittung-Stafshede, P.4
Matthews, K.S.5
Clementi, C.6
-
24
-
-
4644340168
-
Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: How far can a minimalist model go?
-
Matysiak S, Clementi C (2004) Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go? J Mol Biol 343: 235-248.
-
(2004)
J Mol Biol
, vol.343
, pp. 235-248
-
-
Matysiak, S.1
Clementi, C.2
-
26
-
-
0037093654
-
Native and non-native interactions along protein folding and unfolding pathways
-
DOI 10.1002/prot.10089
-
Paci E, Vendruscolo M, Karplus M (2002) Native and non-native interactions along protein folding and unfolding pathways. Proteins 47: 379-392. (Pubitemid 34438687)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.3
, pp. 379-392
-
-
Paci, E.1
Vendruscolo, M.2
Karplus, M.3
-
27
-
-
0036928148
-
Validity of Gō models: Comparison with a solvent-shielded empirical energy decomposition
-
Paci E, Vendruscolo M, Karplus M (2002) Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition. Biophys J 83: 3032-3038. (Pubitemid 36041926)
-
(2002)
Biophysical Journal
, vol.83
, Issue.6
, pp. 3032-3038
-
-
Paci, E.1
Vendruscolo, M.2
Karplus, M.3
-
28
-
-
0020024242
-
Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding
-
Kim PS, Baldwin RL (1982) Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. Annu Rev Biochem 51: 459-489.
-
(1982)
Annu Rev Biochem
, vol.51
, pp. 459-489
-
-
Kim, P.S.1
Baldwin, R.L.2
-
29
-
-
0025345415
-
Intermediates in the folding reactions of small proteins
-
Kim PS, Baldwin RL (1990) Intermediates in the folding reactions of small proteins. Annu Rev Biochem 59: 631-660. (Pubitemid 20207019)
-
(1990)
Annual Review of Biochemistry
, vol.59
, pp. 631-660
-
-
Kim, P.S.1
Baldwin, R.L.2
-
30
-
-
0016671420
-
A model of myoglobin self-organisation
-
Ptitsyn OB, Rashin AA (1975) A model of myoglobin self-organisation. Biophys Chem 3: 1-20.
-
(1975)
Biophys Chem
, vol.3
, pp. 1-20
-
-
Ptitsyn, O.B.1
Rashin, A.A.2
-
32
-
-
33845403686
-
Nanosecond folding dynamics of a three-stranded beta-sheet
-
DOI 10.1021/ja064865+
-
Xu Y, Purkayastha P, Gai F (2006) Nanosecond folding dynamics of a three-stranded beta-sheet. J Am Chem Soc 128: 15836-15842. (Pubitemid 44894125)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.49
, pp. 15836-15842
-
-
Xu, Y.1
Purkayastha, P.2
Gai, F.3
-
33
-
-
0038054301
-
Experimental tests of villin subdomain folding simulations
-
DOI 10.1016/S0022-2836(03)00519-9
-
Kubelka J, Eaton WA, Hofrichter J (2003) Experimental tests of villin subdomain folding simulations. J Mol Biol 329: 625-630. (Pubitemid 36629358)
-
(2003)
Journal of Molecular Biology
, vol.329
, Issue.4
, pp. 625-630
-
-
Kubelka, J.1
Eaton, W.A.2
Hofrichter, J.3
-
34
-
-
33646759974
-
Submicrosecond protein folding
-
Kubelka J, Chiu TK, Davies DR, Eaton WA, Hofrichter J (2006) Submicrosecond protein folding. J Mol Biol 359: 546-553.
-
(2006)
J Mol Biol
, vol.359
, pp. 546-553
-
-
Kubelka, J.1
Chiu, T.K.2
Davies, D.R.3
Eaton, W.A.4
Hofrichter, J.5
-
35
-
-
0037073934
-
Experimental identification of downhill protein folding
-
DOI 10.1126/science.1077809
-
Garcia-Mira MM, Sadqi M, Fischer N, Sanchez-Ruiz JM, Munoz V (2002) Experimental identification of downhill protein folding. Science 298: 2191-2195. (Pubitemid 35471244)
-
(2002)
Science
, vol.298
, Issue.5601
, pp. 2191-2195
-
-
Garcia-Mira, M.M.1
Sadqi, M.2
Fischer, N.3
Sanchez-Ruiz, J.M.4
Munoz, V.5
-
36
-
-
33746102627
-
Atom-by-atom analysis of global downhill protein folding
-
DOI 10.1038/nature04859, PII NATURE04859
-
Sadqi M, Fushman D, Munoz V (2006) Atom-by-atom analysis of global downhill protein folding. Nature 442: 317-321. (Pubitemid 44114908)
-
(2006)
Nature
, vol.442
, Issue.7100
, pp. 317-321
-
-
Sadqi, M.1
Fushman, D.2
Munoz, V.3
-
37
-
-
51349086269
-
Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis
-
Faisca PF, Travasso RD, Ball RC, Shakhnovich EI (2008) Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis. J Chem Phys 129: 095108.
-
(2008)
J Chem Phys
, vol.129
, pp. 095108
-
-
Faisca, P.F.1
Travasso, R.D.2
Ball, R.C.3
Shakhnovich, E.I.4
-
38
-
-
38949163021
-
Stability and kinetic properties of C5-domain from myosin binding protein C and its mutants
-
Guardiani C, Cecconi F, Livi R (2008) Stability and kinetic properties of C5-domain from myosin binding protein C and its mutants. Biophys J 94: 1403-1411.
-
(2008)
Biophys J
, vol.94
, pp. 1403-1411
-
-
Guardiani, C.1
Cecconi, F.2
Livi, R.3
-
39
-
-
33745712768
-
Sequence of events in folding mechanism: Beyond the Go model
-
Sutto L, Tiana G, Broglia RA (2006) Sequence of events in folding mechanism: beyond the Go model. Protein Sci 15: 1638-1652.
-
(2006)
Protein Sci
, vol.15
, pp. 1638-1652
-
-
Sutto, L.1
Tiana, G.2
Broglia, R.A.3
-
40
-
-
0029151158
-
Submillisecond folding of monomeric lambda repressor
-
Huang GS, Oas TG (1995) Submillisecond folding of monomeric lambda repressor. Proc Natl Acad Sci U S A 92: 6878-6882.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 6878-6882
-
-
Huang, G.S.1
Oas, T.G.2
-
41
-
-
0030601788
-
Microsecond protein folding through a compact transition state
-
DOI 10.1006/jmbi.1996.0577
-
Burton RE, Huang GS, Daugherty MA, Fullbright PW, Oas TG (1996) Microsecond protein folding through a compact transition state. J Mol Biol 263: 311-322. (Pubitemid 26363090)
-
(1996)
Journal of Molecular Biology
, vol.263
, Issue.2
, pp. 311-322
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Fullbright, P.W.4
Oas, T.G.5
-
42
-
-
0031005061
-
The energy landscape of a fastfolding protein mapped by Ala→Gly substitutions
-
Burton RE, Huang GS, Daugherty MA, Calderone TL, Oas TG (1997) The energy landscape of a fastfolding protein mapped by Ala→Gly substitutions. Nat Struct Biol 4: 305-310.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 305-310
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Calderone, T.L.4
Oas, T.G.5
-
43
-
-
34250161638
-
6-85 towards downhill folding at its melting temperature
-
6-85 towards downhill folding at its melting temperature. J Mol Biol 370: 574-584.
-
(2007)
J Mol Biol
, vol.370
, pp. 574-584
-
-
Liu, F.1
Gruebele, M.2
-
44
-
-
33751071378
-
6-85*
-
DOI 10.1110/ps.062257406
-
Dumont C, Matsumura Y, Kim SJ, Li J, Kondrashkina E, et al. (2006) Solvent-tuning the collapse and helix formation time scales of lambda(6-85). Protein Sci 15: 2596-2604. (Pubitemid 44771696)
-
(2006)
Protein Science
, vol.15
, Issue.11
, pp. 2596-2604
-
-
Dumont, C.1
Matsumura, Y.2
Seung, J.K.3
Li, J.4
Kondrashkina, E.5
Kihara, H.6
Gruebele, M.7
-
45
-
-
3042814557
-
Folding λ-repressor at its speed limit
-
Yang WY, Gruebele M (2004) Folding λ-repressor at its speed limit. Biophys J 87: 596-608.
-
(2004)
Biophys J
, vol.87
, pp. 596-608
-
-
Yang, W.Y.1
Gruebele, M.2
-
47
-
-
0038329308
-
Folding at the speed limit
-
Yang WY, Gruebele M (2003) Folding at the speed limit. Nature 423: 193-197.
-
(2003)
Nature
, vol.423
, pp. 193-197
-
-
Yang, W.Y.1
Gruebele, M.2
-
48
-
-
33644514666
-
Methionine oxidation of monomeric l repressor: The denatured state ensemble under nondenaturing conditions
-
DOI 10.1110/ps.051856406
-
Chugha P, Sage HJ, Oas TG (2006) Methionine oxidation of monomeric lambda repressor: the denatured state ensemble under nondenaturing conditions. Protein Sci 15: 533-542. (Pubitemid 43306247)
-
(2006)
Protein Science
, vol.15
, Issue.3
, pp. 533-542
-
-
Chugha, P.1
Sage, H.J.2
Oas, T.G.3
-
49
-
-
33846817348
-
Backbone dynamics of the monomeric lambda repressor denatured state ensemble under nondenaturing conditions
-
DOI 10.1021/bi061371g
-
Chugha P, Oas TG (2007) Backbone dynamics of the monomeric lambda repressor denatured state ensemble under nondenaturing conditions. Biochemistry 46: 1141-1151. (Pubitemid 46208463)
-
(2007)
Biochemistry
, vol.46
, Issue.5
, pp. 1141-1151
-
-
Chugha, P.1
Oas, T.G.2
-
50
-
-
0036785556
-
The origins of asymmetry in the folding transition states of protein L and protein G
-
DOI 10.1110/ps.0205402
-
Karanicolas J, Brooks CL (2002) The origins of asymmetry in the folding transition states of protein L and protein G. Protein Sci 11: 2351-2361. (Pubitemid 35050661)
-
(2002)
Protein Science
, vol.11
, Issue.10
, pp. 2351-2361
-
-
Karanicolas, J.1
Brooks III, C.L.2
-
51
-
-
0242383943
-
Improved Go-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions
-
DOI 10.1016/j.jmb.2003.09.047
-
Karanicolas J, Brooks CL (2003) Improved Go-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions. J Mol Biol 334: 309-325. (Pubitemid 37357269)
-
(2003)
Journal of Molecular Biology
, vol.334
, Issue.2
, pp. 309-325
-
-
Karanicolas, J.1
Brooks III, C.L.2
-
52
-
-
67650500988
-
CHARMM: The Biomolecular Simulation Program
-
In press.
-
Brooks BR, Brooks CL, Mackerell AD, Nilsson L, Petrella RJ, et al. (2009) CHARMM: The Biomolecular Simulation Program. J Comput Chem. In press.
-
(2009)
J Comput Chem
-
-
Brooks, B.R.1
Brooks, C.L.2
Mackerell, A.D.3
Nilsson, L.4
Petrella, R.J.5
-
53
-
-
44949111355
-
Solvent viscosity dependence of the protein folding dynamics
-
Rhee YM, Pande VS (2008) Solvent viscosity dependence of the protein folding dynamics. J Phys Chem B 112: 6221-6227.
-
(2008)
J Phys Chem B
, vol.112
, pp. 6221-6227
-
-
Rhee, Y.M.1
Pande, V.S.2
-
54
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules.1. The method
-
Kumar S, Bouzida D, Swendsen RH, Kollman PA, Rosenberg JM (1992) The weighted histogram analysis method for free-energy calculations on biomolecules .1. The method. J Comput Chem 13: 1011-1021.
-
(1992)
J Comput Chem
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
55
-
-
52949137003
-
Diffusive reaction dynamics on invariant free energy profiles
-
Krivov SV, Karplus M (2008) Diffusive reaction dynamics on invariant free energy profiles. Proc Natl Acad Sci U S A 105: 13841-13846.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 13841-13846
-
-
Krivov, S.V.1
Karplus, M.2
-
56
-
-
4344716256
-
Random-coil behavior and the dimensions of chemically unfolded proteins
-
DOI 10.1073/pnas.0403643101
-
Kohn JE, Millett IS, Jacob J, Zagrovic B, Dillon TM, et al. (2004) Random-coil behavior and the dimensions of chemically unfolded proteins. Proc Natl Acad Sci U S A 101: 12491-12496. (Pubitemid 39122051)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.34
, pp. 12491-12496
-
-
Kohn, J.E.1
Millett, I.S.2
Jacob, J.3
Zagrovic, B.4
Dillon, T.M.5
Cingel, N.6
Dothager, R.S.7
Seifert, S.8
Thiyagarajan, P.9
Sosnick, T.R.10
Hasan, M.Z.11
Pande, V.S.12
Ruczinski, I.13
Doniach, S.14
Plaxco, K.W.15
-
57
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8 M urea
-
Shortle DR, Ackerman MS (2001) Persistence of native-like topology in a denatured protein in 8 M urea. Science 293: 487-489.
-
(2001)
Science
, vol.293
, pp. 487-489
-
-
Shortle, D.R.1
Ackerman, M.S.2
-
58
-
-
34250330411
-
Secondary-structure analysis of denatured proteins by vacuum-ultraviolet circular dichroism spectroscopy
-
DOI 10.1529/biophysj.106.103515
-
Matsuo K, Sakurada Y, Yonehara R, Kataoka M, Gekko K (2007) Secondary-structure analysis of denatured proteins by vacuum-ultraviolet circular dichroism spectroscopy. Biophys J 92: 4088-4096. (Pubitemid 46910593)
-
(2007)
Biophysical Journal
, vol.92
, Issue.11
, pp. 4088-4096
-
-
Matsuo, K.1
Sakurada, Y.2
Yonehara, R.3
Kataoka, M.4
Gekko, K.5
-
60
-
-
28244437028
-
The Yin and Yang of protein folding
-
Jahn TR, Radford SE (2005) The Yin and Yang of protein folding. FEBS J 272: 5962-5970.
-
(2005)
FEBS J
, vol.272
, pp. 5962-5970
-
-
Jahn, T.R.1
Radford, S.E.2
-
62
-
-
34447261443
-
The Effect of Increasing the Stability of Non-native Interactions on the Folding Landscape of the Bacterial Immunity Protein Im9
-
DOI 10.1016/j.jmb.2007.05.010, PII S0022283607006225
-
Morton VL, Friel CT, Allen LR, Paci E, Radford SE (2007) Increasing the stability of an intermediate influences the subsequent transition state ensemble in the folding of the bacterial immunity protein Im9. J Mol Biol 371: 554-568. (Pubitemid 47048267)
-
(2007)
Journal of Molecular Biology
, vol.371
, Issue.2
, pp. 554-568
-
-
Morton, V.L.1
Friel, C.T.2
Allen, L.R.3
Paci, E.4
Radford, S.E.5
-
63
-
-
0037067120
-
Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent
-
DOI 10.1021/ja025789n
-
Yeh IC, Hummer G (2002) Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent. J Am Chem Soc 124: 6563-6568. (Pubitemid 34602647)
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.23
, pp. 6563-6568
-
-
Yeh, I.-C.1
Hummer, G.2
-
64
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometric features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometric features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|