Parasegetibacter luojiensis gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from a forest soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 12, 2009, Pages 3058-3062

  Zhang, Kundi ^a   Tang, Yali ^a   Zhang, Lei ^a   Dai, Jun ^a   Wang, Yang ^a   Luo, Xuesong ^a   Liu, Ming ^a   Luo, Guangchao ^a   Fang, Chengxiang ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BACTEROIDETES; CHEMOTAXONOMY; CHITINOPHAGA; CONTROLLED STUDY; FATTY ACID ANALYSIS; FOREST SOIL; GENE CLUSTER; GENE SEQUENCE; HETEROTROPHY; NIABELLA; NIASTELLA; NONHUMAN; NUCLEOTIDE SEQUENCE; PARASEGETIBACTER LUOJIENSIS; PHYLOGENY; PRIORITY JOURNAL; PROTEIN CONTENT; SEGETIBACTER; SEQUENCE ANALYSIS; SPECIES COMPARISON; STRAIN DIFFERENCE; TERRIMONAS;

BACTEROIDETES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

BACTEROIDETES; CHITINOPHAGA; NIASTELLA; POPULUS EUPHRATICA;

EID: 72149101521     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.008763-0     Document Type: Article

References (24)

1. An, D. S., Lee, H. G., Im, W. T., Liu, O. M. & Lee, S. T. (2007). Segetibacter koreensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes, isolated from the soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 57, 1828-1833.
2. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Bowman, J. P., McCammon, S. A., Brown, M. V., Nichols, D. S. & McMeekin, T. A. (1997). Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63, 3068-3078.
4. Buczolits, S., Denner, E. B. M., Vybiral, D., Wieser, M., Kampfer, P. & Busse, H.-J. (2002). Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov. Int J Syst Evol Microbiol 52, 445-456.
5. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
6. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
7. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. H. Phillips. Washington, DC: American Society for Microbiology.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Garrity, G. M. & Holt, J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
11. Kim, B. Y., Weon, H. Y., Yoo, S. H., Hong, S. B., Kwon, S. W., Stackebrandt, E. & Go, S. J. (2007). Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea. Int J Syst Evol Microbiol 57, 538-541.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R.M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsiaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
14. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes, 2nd edn, vol. 4, pp. 3631-3675. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Sangkhobol, V. & Skerman, V. B. D. (1981). Chitinophaga, a new genus of chitinolytic myxobacteria. Int J Syst Bacteriol 31, 285-293.
17. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
18. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Weon, H. Y., Kim, B. Y., Yoo, S. H., Lee, S. Y., Kwon, S. W., Go, S. J. & Stackebrandt, E. (2006). Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng. Int J Syst Evol Microbiol 56, 1777-1782.
21. Wilson, K. (1987). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Green Publishing & Wiley-Interscience.
22. Xie, C. H. & Yokota, A. (2003). Phylogenetic analysis of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
23. Xie, C. H. & Yokota, A. (2006). Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 1117-1121.
24. Yoon, M. H. & Im, W. T. (2007). Flavisolibacter ginsengiterrae gen. nov., sp. nov. and Flavisolibacter ginsengisoli sp. nov., isolated from ginseng cultivating soil. Int J Syst Evol Microbiol 57, 1834-1839.