First complexomic study of alkane-binding protein complexes in the yeast Yarrowia lipolytica

Talanta

Volumn 80, Issue 4, 2010, Pages 1576-1585

  Lasserre, Jean Paul ^a,b   Nicaud, Jean Marc ^c   Pagot, Yves ^c   Joubert Caron, Raymonde ^a   Caron, Michel ^a   Hardouin, Julie ^a,d  

^a UNIVERSITÉ PARIS 13   (France)

^b LUXEMBOURG INSTITUTE OF SCIENCE AND TECHNOLOGY   (Luxembourg)

^c CNRS   (France)

^d UMR 7244   (France)

Author keywords

Alkane; Complexomic; Heteromultimer; Homomultimer; Mass spectrometry; Native protein complex; Two dimensional blue native SDS PAGE; Yarrowia lipolytica

Indexed keywords

CELL MEMBRANES; FATTY ACIDS; GENES; HYDROPHOBICITY; MASS SPECTROMETRY; PARAFFINS; SUBSTRATES; YEAST;

COMPLEXOMIC; HETEROMULTIMER; HOMOMULTIMER; NATIVE PROTEINS; YARROWIA LIPOLYTICA;

PROTEINS;

EID: 71949116012     PISSN: 00399140     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.talanta.2009.07.016     Document Type: Article

References (63)

1. Fickers P., Benetti P.H., Wache Y., Marty A., Mauersberger S., Smit M.S., and Nicaud J.M. FEMS Yeast Res 5 (2005) 527
2. Beckerich J.M., Boisrame-Baudevin A., and Gaillardin C. Int Microbiol 1 (1998) 123
3. Swennen D., and Beckerich J.M. BMC Evol Biol 7 (2007) 219
4. Titorenko V.I., Smith J.J., Szilard R.K., and Rachubinski R.A. Cell Biochem Biophys 32 Spring (2000) 21
5. Dominguez A., Ferminan E., and Gaillardin C. Contrib Microbiol 5 (2000) 151
6. Kerscher S., Drose S., Zwicker K., Zickermann V., and Brandt U. Biochim Biophys Acta 1555 (2002) 83
7. Dujon B., Sherman D., Fischer G., Durrens P., Casaregola S., Lafontaine I., De Montigny J., Marck C., Neuveglise C., Talla E., Goffard N., Frangeul L., Aigle M., Anthouard V., Babour A., Barbe V., Barnay S., Blanchin S., Beckerich J.M., Beyne E., Bleykasten C., Boisrame A., Boyer J., Cattolico L., Confanioleri F., De Daruvar A., Despons L., Fabre E., Fairhead C., Ferry-Dumazet H., Groppi A., Hantraye F., Hennequin C., Jauniaux N., Joyet P., Kachouri R., Kerrest A., Koszul R., Lemaire M., Lesur I., Ma L., Muller H., Nicaud J.M., Nikolski M., Oztas S., Ozier-Kalogeropoulos O., Pellenz S., Potier S., Richard G.F., Straub M.L., Suleau A., Swennen D., Tekaia F., Wesolowski-Louvel M., Westhof E., Wirth B., Zeniou-Meyer M., Zivanovic I., Bolotin-Fukuhara M., Thierry A., Bouchier C., Caudron B., Scarpelli C., Gaillardin C., Weissenbach J., Wincker P., and Souciet J.L. Nature 430 (2004) 35
8. http://www.cbi.labri.fr/Genolevures
9. C. Neuvèglise, personal communication.
10. Pignede G., Wang H., Fudalej F., Gaillardin C., Seman M., and Nicaud J.M. J Bacteriol 182 (2000) 2802
11. Fickers P., Fudalej F., Le Dall M.T., Casaregola S., Gaillardin C., Thonart P., and Nicaud J.M. Fungal Genet Biol 42 (2005) 264
12. Zinjarde S.S., and Pant A. J Basic Microbiol 42 (2002) 67
13. Mlickova K., Roux E., Athenstaedt K., d'Andrea S., Daum G., Chardot T., and Nicaud J.M. Appl Environ Microbiol 70 (2004) 3918
14. Kabani M., Boisrame A., Beckerich J.M., and Gaillardin C. Gene 241 (2000) 309
15. Athenstaedt K., Jolivet P., Boulard C., Zivy M., Negroni L., Nicaud J.M., and Chardot T. Proteomics 6 (2006) 1450
16. Fields S., and Song O. Nature 340 (1989) 245
17. Fromont-Racine M., Rain J.C., and Legrain P. Nat Genet 16 (1997) 277
18. Giot L., Bader J.S., Brouwer C., Chaudhuri A., Kuang B., Li Y., Hao Y.L., Ooi C.E., Godwin B., Vitols E., Vijayadamodar G., Pochart P., Machineni H., Welsh M., Kong Y., Zerhusen B., Malcolm R., Varrone Z., Collis A., Minto M., Burgess S., McDaniel L., Stimpson E., Spriggs F., Williams J., Neurath K., Ioime N., Agee M., Voss E., Furtak K., Renzulli R., Aanensen N., Carrolla S., Bickelhaupt E., Lazovatsky Y., DaSilva A., Zhong J., Stanyon C.A., Finley Jr. R.L., White K.P., Braverman M., Jarvie T., Gold S., Leach M., Knight J., Shimkets R.A., McKenna M.P., Chant J., and Rothberg J.M. Science 302 (2003) 1727
19. Ito T., Tashiro K., and Kuhara T. Tanpakushitsu Kakusan Koso 46 (2001) 2407
20. Legrain P., and Selig L. FEBS Lett 480 (2000) 32
21. Rain J.C., Selig L., De Reuse H., Battaglia V., Reverdy C., Simon S., Lenzen G., Petel F., Wojcik J., Schachter V., Chemama Y., Labigne A., and Legrain P. Nature 409 (2001) 211
22. Rual J.F., Venkatesan K., Hao T., Hirozane-Kishikawa T., Dricot A., Li N., Berriz G.F., Gibbons F.D., Dreze M., Ayivi-Guedehoussou N., Klitgord N., Simon C., Boxem M., Milstein S., Rosenberg J., Goldberg D.S., Zhang L.V., Wong S.L., Franklin G., Li S., Albala J.S., Lim J., Fraughton C., Llamosas E., Cevik S., Bex C., Lamesch P., Sikorski R.S., Vandenhaute J., Zoghbi H.Y., Smolyar A., Bosak S., Sequerra R., Doucette-Stamm L., Cusick M.E., Hill D.E., Roth F.P., and Vidal M. Nature 437 (2005) 1173
23. Stelzl U., Worm U., Lalowski M., Haenig C., Brembeck F.H., Goehler H., Stroedicke M., Zenkner M., Schoenherr A., Koeppen S., Timm J., Mintzlaff S., Abraham C., Bock N., Kietzmann S., Goedde A., Toksoz E., Droege A., Krobitsch S., Korn B., Birchmeier W., Lehrach H., and Wanker E.E. Cell 122 (2005) 957
24. Uetz P., and Hughes R.E. Curr Opin Microbiol 3 (2000) 303
25. Hultschig C., Kreutzberger J., Seitz H., Konthur Z., Bussow K., and Lehrach H. Curr Opin Chem Biol 10 (2006) 4
26. MacBeath G., and Schreiber S.L. Science 289 (2000) 1760
27. Aebersold R., and Mann M. Nature 422 (2003) 198
28. Butland G., Peregrin-Alvarez J.M., Li J., Yang W., Yang X., Canadien V., Starostine A., Richards D., Beattie B., Krogan N., Davey M., Parkinson J., Greenblatt J., and Emili A. Nature 433 (2005) 531
29. Ewing R.M., Chu P., Elisma F., Li H., Taylor P., Climie S., McBroom-Cerajewski L., Robinson M.D., O'Connor L., Li M., Taylor R., Dharsee M., Ho Y., Heilbut A., Moore L., Zhang S., Ornatsky O., Bukhman Y.V., Ethier M., Sheng Y., Vasilescu J., Abu-Farha M., Lambert J.P., Duewel H.S., Stewart I.I., Kuehl B., Hogue K., Colwill K., Gladwish K., Muskat B., Kinach R., Adams S.L., Moran M.F., Morin G.B., Topaloglou T., and Figeys D. Mol Syst Biol 3 (2007) 89
30. Gavin A.C., Aloy P., Grandi P., Krause R., Boesche M., Marzioch M., Rau C., Jensen L.J., Bastuck S., Dumpelfeld B., Edelmann A., Heurtier M.A., Hoffman V., Hoefert C., Klein K., Hudak M., Michon A.M., Schelder M., Schirle M., Remor M., Rudi T., Hooper S., Bauer A., Bouwmeester T., Casari G., Drewes G., Neubauer G., Rick J.M., Kuster B., Bork P., Russell R.B., and Superti-Furga G. Nature 440 (2006) 631
31. Ho Y., Gruhler A., Heilbut A., Bader G.D., Moore L., Adams S.L., Millar A., Taylor P., Bennett K., Boutilier K., Yang L., Wolting C., Donaldson I., Schandorff S., Shewnarane J., Vo M., Taggart J., Goudreault M., Muskat B., Alfarano C., Dewar D., Lin Z., Michalickova K., Willems A.R., Sassi H., Nielsen P.A., Rasmussen K.J., Andersen J.R., Johansen L.E., Hansen L.H., Jespersen H., Podtelejnikov A., Nielsen E., Crawford J., Poulsen V., Sorensen B.D., Matthiesen J., Hendrickson R.C., Gleeson F., Pawson T., Moran M.F., Durocher D., Mann M., Hogue C.W., Figeys D., and Tyers M. Nature 415 (2002) 180
32. Puig O., Caspary F., Rigaut G., Rutz B., Bouveret E., Bragado-Nilsson E., Wilm M., and Seraphin B. Methods 24 (2001) 218
33. Schuldiner M., Collins S.R., Thompson N.J., Denic V., Bhamidipati A., Punna T., Ihmels J., Andrews B., Boone C., Greenblatt J.F., Weissman J.S., and Krogan N.J. Cell 123 (2005) 507
34. Vasilescu J., and Figeys D. Curr Opin Biotechnol 17 (2006) 394
35. Camacho-Carvajal M.M., Wollscheid B., Aebersold R., Steimle V., and Schamel W.W. Mol Cell Proteomics 3 (2004) 176
36. Claeys D., Geering K., and Meyer B.J. Electrophoresis 26 (2005) 1189
37. Lasserre J.P., Beyne E., Pyndiah S., Lapaillerie D., Claverol S., and Bonneu M. Electrophoresis 27 (2006) 3306
38. Pyndiah S., Lasserre J.P., Menard A., Claverol S., Prouzet-Mauleon V., Megraud F., Zerbib F., and Bonneu M. Mol Cell Proteomics 6 (2007) 193
39. Schagger H., Cramer W.A., von G., and Jagow. Anal Biochem 217 (1994) 220
40. Schagger H., von G., and Jagow. Anal Biochem 166 (1987) 368
41. Schagger H., von G., and Jagow. Anal Biochem 199 (1991) 223
42. Stenberg F., Chovanec P., Maslen S.L., Robinson C.V., Ilag L.L., von Heijne G., and Daley D.O. J Biol Chem 280 (2005) 34409
43. Stroh A., Anderka O., Pfeiffer K., Yagi T., Finel M., Ludwig B., and Schagger H. J Biol Chem 279 (2004) 5000
44. Schwikowski B., Uetz P., and Fields S. Nat Biotechnol 18 (2000) 1257
45. von Mering C., Krause R., Snel B., Cornell M., Oliver S.G., Fields S., and Bork P. Nature 417 (2002) 399
46. Hardouin J., Duchateau M., Joubert-Caron R., and Caron M. Rapid Commun Mass Spectrom 20 (2006) 3236
47. Hardouin J., Joubert-Caron R., and Caron M. J Sep Sci 30 (2007) 1482
48. http://www.ihg2.helmholtz-muenchen.de/ihg/mitoprot.html
49. Abdrakhmanova A., Zickermann V., Bostina M., Radermacher M., Schagger H., Kerscher S., and Brandt U. Biochim Biophys Acta 1658 (2004) 148
50. Morgner N., Zickermann V., Kerscher S., Wittig I., Abdrakhmanova A., Barth H.D., Brutschy B., and Brandt U. Biochim Biophys Acta 1777 (2008) 1384
51. Hirst J., Carroll J., Fearnley I.M., Shannon R.J., and Walker J.E. Biochim Biophys Acta 1604 (2003) 135
52. Videira A., and Duarte M. Biochim Biophys Acta 1555 (2002) 187
53. Leterme S., and Boutry M. Plant Physiol 102 (1993) 435
54. Cardol P., Vanrobaeys F., Devreese B., Van Beeumen J., Matagne R.F., and Remacle C. Biochim Biophys Acta 1658 (2004) 212
55. Titorenko V.I., Nicaud J.M., Wang H., Chan H., and Rachubinski R.A. J Cell Biol 156 (2002) 481
56. Guo T., Kit Y.Y., Nicaud J.M., Le Dall M.T., Sears S.K., Vali H., Chan H., Rachubinski R.A., and Titorenko V.I. J Cell Biol 162 (2003) 1255
57. Ashworth J.M., Kornberg H.L., and Proc. R Soc Lond B Biol Sci 165 (1966) 179
58. Sha B., Phillips S.E., Bankaitis V.A., and Luo M. Nature 391 (1998) 506
59. Saito K., Tautz L., and Mustelin T. Biochim Biophys Acta 1771 (2007) 719
60. Thevenieau F., Le Dall M.-T., Nthangeni B., Mauersberger S., Marchal R., and Nicaud J.-M. Fungal Genet Biol 44 (2007) 531
61. Albuquerque P.C., Nakayasu E.S., Rodrigues M.L., Frases S., Casadevall A., Zancope-Oliveira R.M., Almeida I.C., and Nosanchuk J.D. Cell Microbiol 10 (2008) 1695-1710
62. http://www.ca.expasy.org/uniprot
63. Nombela C., Gil C., and Chaffin W.L. Trends Microbiol 14 (2006) 15-21