Systematics and evolutionary history of the circum-Mediterranean genus Anagyris L. (Fabaceae) based on morphological and molecular data

Taxon

Volumn 58, Issue 4, 2009, Pages 1290-1306

  Ortega Olivencia, Ana ^a   Catalán, Pilar ^b  

^a UNIVERSITY OF EXTREMADURA   (Spain)

^b UNIVERSITY OF ZARAGOZA   (Spain)

Author keywords

Anagyris; Divergence times; Mediterranean Macaronesian region; Morphology; Nuclear and plastid sequences; Thermopsideae

Indexed keywords

BAYESIAN ANALYSIS; CLADISTICS; DATA ACQUISITION; ENDEMIC SPECIES; MEDITERRANEAN ENVIRONMENT; MOLECULAR ANALYSIS; MORPHOMETRY; PLANT COMMUNITY; SPECIES DIVERSITY; STATISTICAL ANALYSIS; TAXONOMY;

ANAGYRIS; ANAGYRIS FOETIDA; FABACEAE; THERMOPSIDEAE;

EID: 71149118440     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.1002/tax.584018     Document Type: Article

References (87)

1. Aïnouche, A.-K. & Bayer, R.J. 1999. Phylogenetic relation- ships in Lupinus (Fabaceae: Papilionoideae) based on in- ternal transcribed spacer sequences (ITS) of nuclear ribo- somal DNA. Amer. J. Bot. 86: 590-607.
2. Aïnouche, A.-K., Bayer, R.J., Cubas, P. & Misset, M.-T. 2003. Phylogenetic relationships within tribe Genisteae (Papilionoideae) with special reference to genus Ulex. Pp. 239-252 in: Klitgaard, B.B. & Bruneau, A. (eds.), Advances in Legume Systematics, part 10, Higher Level Systematics. Royal Botanic Gardens, Kew.
3. Allan, G. & Porter, J.M. 2000. Tribal delimitation and phylogenetic relationships of tribes Loteae and Coronilleae (Faboideae: Fabaceae) with special reference to Lotus: evidence from nuclear ribosomal ITS sequences. Amer. J. Bot. 87: 1871-1881.
4. Álvarez, I., Fuertes, J., Panero, J.L. & Nieto, G. 2001. A phy- logenetic analysis of Doronicum (Asteraceae, Senecioneae) based on morphological, nuclear ribosomal (ITS) and chlo- roplast (trnL-F) evidence. Molec. Phylog. Evol. 20: 41-64.
5. Bell, C.D., Soltis, D.E. & Soltis, P.S. 2005. The age of the angiosperms: a molecular timescale without clock. Evolution 59: 1245-1258.
6. Bena, G., Jubier, M.F., Olivieri, I. & Lejeune, B. 1998. Ribos- omal external and internal transcribed spacers: combined use in the phylogenetic analysis of Medicago (Legumi- nosae). J. Molec. Evol. 46: 299-306.
7. Boatwright, J.S., Savolainen, V., van Wyk, B.-E., Schutte- Vlok, A.L., Forest, F. & van der Bank, M. 2008. Sys- tematic position of the anomalous genus Cadia and the phylogeny of the tribe Podalyrieae. Syst. Bot. 33: 133-147.
8. Bramwell, D. 1976. The endemic flora of the Canary Islands; distribution, relationships, and phytogeography. Pp. 207-240 in: Kunkel, G. (ed.), Biogeography and Ecology in the Canary Islands. W. Junk, The Hague.
9. Bruneau, A., Forest, F., Herendeen, P.S., Klitgaard, B.B. & Lewis, G.P. 2001. Phylogenetic relationships in the Cesal- pinoideae (Leguminosae) as inferred from chloroplast trnL intron sequences. Syst. Bot. 26: 487-514.
10. Carracedo, J.C. 1999. Growth, structure, instability and col- lapse of Canarian volcanoes and comparisons with Hawai- ian volcanoes. J. Volcanol. Geotherm. Res. 94: 1-19.
11. Catalán, P., Torrecilla, P., López-Rodríguez, J.A. & Olmstead, R.G. 2004. Phylogeny of the festucoid grasses of subtribe Loliinae and allies (Poeae, Pooideae) inferred from ITS and trnL-F. Molec. Phylog. Evol. 31: 517-541.
12. Comes, H.P. 2004. The Mediterranean region a hotspot for plant biogeographic research. New Phytol. 164: 11-14.
13. Crisp, M.D., Gilmore, S. &van Wyk, B.-E. 2000. Molecular phylogeny of the genistoid tribes of papilionoid legumes.Pp. 249-276 in: Herendeen, P.S. & Bruneau, A. (eds.), Advances in Legume Systematics, part 9. Royal Botanic Gardens, Kew.
14. Cronk, Q.C.B. 1992. Relict floras of Atlantic islands: patterns assessed. Biol. J. Linn. Soc. 46: 91-103.
15. Cubas, P., Pardo, C. & Tahiri, H. 2002. Molecular approach to the phylogeny and systematics of Cytisus (Legumino- sae) and related genera based on nucleotide sequences of nrDNA (ITS region) and cpDNA (trnL-trnF intergenic spacer). Pl. Syst. Evol. 233: 223-242.
16. Doyle, J.J., Chappill, J.A., Bailey, C.D. & Kajita, T. 2000. Towards a comprehensive phylogeny of legumes: evidence from rbcL sequences and non-molecular data. Pp. 1-20 in: Herendeen, P.S. & Bruneau, A. (eds.), Advances in Legume Systematics, part 9. Royal Botanic Gardens, Kew.
17. Doyle, J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
18. Farris, J.S., Källersjö, M., Kluge, A.G. & Bult, C. 1994. Test- ing significance of incongruence. Cladistics 10: 315-319.
19. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
20. Felsenstein, J. 1993. Phylip (Phylogeny Inference Package), version 3.5. University of Washington, Seattle.
21. Font Quer, P. 1980. Plantas Medicinales. El Dioscórides Renovado. Labor, Barcelona.
22. Forest, F., Nänni, I., Chase, M.W., Crane, P.R. & Hawkins, J.A. 2007. Diversification of a large genus in a continental biodiversity hotspot: temporal and spatial origin of Mu- raltia (Polygalaceae) in the Cape of South Africa. Molec. Phylog. Evol. 43: 60-74.
23. Francisco-Ortega, J., Cansen, R. & Santos-Guerra, A. 1996. Chloroplast DNA evidence of colonization, adaptive radiation, and hybridization in the evolution of the Macarone- sian flora. Proc. Natl. Acad. Sci. U.S.A. 93: 4085-4090.
24. Francisco-Ortega, J., Santos-Guerra, A., Hines, A. & Jansen, R.K. 1997. Molecular evidence for a Mediterranean origin of the Macaronesian endemic genus Argyranthemum (Asteraceae). Amer. J. Bot. 84: 1595-1613.
25. Fuertes-Aguilar, J., Rosselló, J.A. & Nieto Feliner, G. 1999. Molecular evidence for the Compilospecies Model of Re- ticulate Evolution in Armeria (Plumbaginaceae). Syst. Biol. 48: 735-754.
26. Gaut, B.S., Clark, L.G., Wendel, J.F. & Muse, S.V. 1997. Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). Molec. Biol. Evol. 14: 769-777.
27. Guo, S.-X., G. & Zhou, Z.-K. 1992. The megafossil legumes from China. Pp. 207-223 in: Herendeen, P.S. & Dilcher, D.L. (eds.), Advances in Legume Systematics, part 4, The Fossil Record. Royal Botanic Gardens, Kew.
28. Gutiérrez-Larena, B., Fuertes-Aguilar, J. & Nieto-Feliner, G. 2002. Glacial-induced altitudinal migrations in Armeria (Plumbaginaceae) inferred from patterns of chloroplast DNA haplotype sharing. Molec. Ecol. 11: 1965-1974.
29. Haddock, R.C. & Chaplin, S.J. 1982. Pollination and seed production in two phenologically divergent prairie legumes (Baptisia leucophaea and B. leucantha). Amer. Midl. Natu- ralist 108: 175-186.
30. Harder, L.D. & Cruzan, M.B. 1990. An evaluation of the physiological and evolutionary influences of inflorescence size and flower depth on nectar production. Funct. Ecol. 4: 559-572.
31. Herrera, C.M. 1992. Historical effects and sorting processes as explanations for contemporary ecological patterns: char- acter syndromes in Mediterranean woody plants. Amer. Naturalist 140: 421-446.
32. Hess, J., Kadereit, J.W. & Vargas, P. 2000. The colonization history of Olea europaea L. in Macaronesia based on in- ternal transcribed spacer 1 (ITS-1) sequences, randomly amplified polymorphic DNAs (RAPD), and intersimple sequence repeats (ISSR). Molec. Ecol. 9: 857-868.
33. Huelsenbeck, J.P. & Ronquist, F. 2001. MrBayes. Bayesian inference of phylogenetic trees. Bioinformatics 17: 754- 755.
34. Juan, C., Emerson, B.C., Oromí, P. & Hewitt, G.M. 2000. Colonization and diversification: towards a phylogeo- graphic synthesis for the Canary Islands. Trends Ecol. Evol. 15: 104-109.
35. Käss, E. & Wink, M. 1995. Molecular phylogeny of the Pa- pilionoideae (Family Leguminosae): rbcL gene sequences versus chemical taxonomy. Bot. Acta 108: 149-162.
36. Käss, E. & Wink, M. 1997. Phylogenetic relationships in the Papilionoideae (Family Leguminosae) based on nucleotide sequences of cpDNA (rbcL) and ncDNA (ITS 1 and 2). Molec. Phylog. Evol. 8: 65-88.
37. Kay, K.M., Whittall, J.B. & Hodges, S.A. 2006. A survey of nuclear internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol. Biol. 6: 36-44.
38. Kim, S.-C., Crawford, D.J., Francisco-Ortega, J. & Santos- Guerra, A. 1996. A common origin for woody Sonchus and five related genera in the Macaronesian islands: mo- lecular evidence for extensive radiation. Proc. Natl. Acad. Sci. U.S.A. 93: 7743-7748.
39. Kishino, H., Thorne, J.L. & Brunno, W.J. 2001. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Molec. Biol. Evol. 18: 352- 361.
40. Lavin, M., Herendeen, P.S. & Wojciechowski, M.F. 2005. Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during Tertiary. Syst. Biol. 54: 530-549.
41. Lavin, M., Schrire, B.P., Lewis, G., Pennington, R.T., Delgado-Salinas, A., Thulin, M., Hughes, C.E., Matos, A.B. & Wojciechowski, M.F. 2004. Metacommunity process rather than continental tectonic history better explains geographically structured phylogenies in legumes. Philos. Trans., Ser. B 359: 1509-1522.
42. Leebens-Mack, J. & Milligan, B.G. 1998. Pollination biology in hybridizing Baptisia (Fabaceae) populations. Amer. J. Bot. 85: 500-507.
43. Lock, J.M. 2005. Tribe Thermopsideae. Pp. 263-265 in: Lewis, G., Schrire, B., Mackinder, B. & Lock, M. (eds.), Legumes of the World. Royal Botanic Gardens, Kew.
44. López, G. 2001. Los Árboles y Arbustos de la Península Ibérica e Islas Baleares, vol. 2. Mundi Prensa, Madrid.
45. Mabberley, D.J. 1997. The Plant-book. A Portable Dictionary of the Vascular Plants. Cambridge University Press, Cambridge.
46. Mesa, R., Marrero, M., Carqué, E., Oval, J.P., Afonso, L., Hernández, A., Rodríguez, B., Acevedo, A., Naranjo, J. & Santana, J. 2003. Anagyris latifolia Brouss. ex Willd. Pp. 90-91 in: Bañares, Á., Blanca, G., Güemes, J., Moreno, J.C. & Ortiz, S. (eds.), Atlas y Libro Rojo de la Flora Vas-cular Amenazada de España. Dirección General de Con-servación de la Naturaleza, Madrid.
47. Moore, M.J., Francisco-Ortega, J., Santos-Guerra, A. & Jansen, R.K. 2002. Chloroplast DNA evidence for the roles of island colonization and extinction in Tolpis (Aster- aceae: Lactuceae). Amer. J. Bot. 89: 518-526.
48. Morrone, J.J. & Crisci, J.V. 1995. Historical biogeography: introduction to methods. Annual Rev. Ecol. Syst. 26: 373-401.
49. Muse, S.V. 2000. Examining rates and patterns of nucleotide substitution in plants. Pl. Molec. Biol. 42: 25-43.
50. Ortega-Olivencia, A., Rodríguez-Riaño, T., Valtueña, F.J., López, J. & Devesa, J.A. 2005. First confirmation of a native bird-pollinated plant in Europe. Oikos 110: 578-590.
51. Paiva, J. 1999. Thermopsideae Yakovlev. Pp. 37-39 in: Talav- era, S., Aedo, C., Castroviejo, S., Romero Zarco, C., Sáez, L., Salgueiro, F.J. & Velayos, M. (eds.), Flora Iberica, vol. VII(I), Leguminosae (partim). Real Jardín Botánico, CSIC, Madrid.
52. Palamarev, E. 1989. Paleobotanical evidences of the Tertiary history and origin of the Mediterranean sclerophyll den- droflora. Pl. Syst. Evol. 162: 93-107.
53. Panero, J.L., Francisco-Ortega, J., Jansen, R.K. & Santos- Guerra, A. 1999. Molecular evidence for multiple origins of woodiness and a New World biogeographic connection of the Macaronesian Island endemic Pericallis (Aster- aceae: Senecioneae). Proc. Natl. Acad. Sci. U.S.A. 96: 13886-13891.
54. Pardo, C., Cubas, P. & Tahiri, H. 2004. Molecular phylogeny and systematics of Genista (Leguminosae) and related gen- era based on nucleotide sequences of nrDNA (ITS region) and cpDNA (trnL-trnF intergenic spacer). Pl. Syst. Evol. 244: 93-119.
55. Pennington, R.T., Lavin, M., Ireland, H., Klitgaard, B., Preston, J. & Hu, J.-M. 2001. Phylogenetic relationships of basal papilionoid legumes based upon sequence of the chloroplast trnL intron. Syst. Bot. 26: 537-556.
56. Pérez de Paz, P.L. 1975. El género Anagyris L. (Leguminosae) en las Islas Canarias. Vieraea 4: 164-172.
57. Pimentel, M., Estévez-Pérez, G. & Sahuquillo, E. 2007. Euro- pean sweet vernal grasses (Anthoxanthum: Poaceae, Pooi- deae, Aveneae): a morphometric taxonomical approach. Syst. Bot. 32: 43-59.
58. Posada, D. & Crandall, K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
59. Primack, R.B. 1987. Relationships among flowers, fruits, and seeds. Annual Rev. Ecol. Syst. 18: 409-430.
60. Rambaut, A. 1996. Sequence Alignment Editor (Se-Al), version 1.0 alpha 1. Oxford University Press, Oxford.
61. Richardson, J.E., Pennington, R.T., Pennington, T.D. & Hol- lingsworth, P.M. 2001. Rapid diversification of a species- rich genus of neotropical rain forest trees. Science 293: 2242-2245.
62. Rohlf, F.J. 2005. NTSYSpc, Numerical Taxonomy and Multivariate Analysis System, version 2.2. Getting Started Guide. Exeter Software, New York.
63. Simmons, M.P. & Ochoterena, H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49: 369-381.
64. Sneath, P.H.A. & Sokal, R.R. 1973. Numerical Taxonomy: The Principles and Practice of Numerical Classification. Freeman, San Francisco.
65. Soreng, R.J. 1990. Chloroplast-DNA phylogenetics and bioge- ography in a reticulating group: study in Poa (Poaceae). Amer. J. Bot. 77: 1383-1400.
66. Suc, J.P. 1984. Origin and evolution of the Mediterranean veg- etation and climate in Europe. Nature 307: 409-432.
67. Sunding, P. 1979. Origins of the Macaronesian flora. Pp. 13-40 in: Bramwell, D. (ed.), Plants and Islands. Academic Press, London.
68. Swofford, D.L. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods), version 4.0b10. Sinauer, Sunderland.
69. Taberlet, P., Gielly, L., Pauton, G. & Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Molec. Biol. 17: 1105-1109.
70. Tajima, F. & Nei, M. 1984. Estimation of evolutionary distance between nucleotide sequences. Molec. Biol. Evol. 1: 269-285.
71. Tamura, K., Dudley, J., Nei, M. & Kumar, S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) soft- ware version 4.0. Molec. Biol. Evol. 24: 1596-1599.
72. Thorne, J.L. & Kishino, H. 2002. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51: 689-702.
73. Thorne, J.L., Kishino, H. & Painter, I.S. 1998. Estimating the rate of evolution of the rate molecular evolution. Molec. Biol. Evol. 15: 1647-1657.
74. Thulin, M., Lavin, M., Remy, P. & Delgado-Salinas, A. 2004. Phylogeny and biogeography of Wajira (Leguminosae): a monophyletic segregate of Vigna centered in the horn of Africa region. Syst. Bot. 29: 903-920.
75. Torrecilla, P., López-Rodríguez, J.A., Stancik, D. & Cata- lán, P. 2003. Systematics of Festuca L. sects. Eskia Willk., Pseudatropis Kriv., Amphigenes (Janka) Tzvel., Pseudo- scariosa Kriv. and Scariosae Hack. based on analysis of morphological characters and DNA sequences. Pl. Syst. Evol. 239: 113-139.
76. Townsend, C.C. & Guest, E. 1974. Flora of Iraq, vol. 3, Le- guminales. Ministry of Agriculture and Agrarian Reform, Baghdad.
77. Turner, B.L. 1981. Thermopsideae Yakovlev. Pp. 403-407 in: Polhill, R.M. & Raven, P.H. (eds), Advances in Legume Systematics, part 1. Royal Botanic Gardens, Kew.
78. Valtueña, F.J., Ortega-Olivencia, A., Rodríguez-Riaño & López, J. 2008. Reproductive biology in Anagyris foetida L. (Leguminosae), an autumn-winter flowering and orni- thophilous Mediterranean shrub. Bot. J. Linn. Soc. 157: 519-532.
79. Vogel, St., Westerkamp, Ch., Thiel, B. & Gessner, K. 1984. Ornithophilie auf den Canarischen Inseln. Pl. Syst. Evol. 146: 225-248.
80. Wang, H.C., Sun, H., Compton, J.A. & Yang, J.B. 2006. A phylogeny of Thermopsideae (Leguminosae: Papilionoideae) inferred from nuclear ribosomal internal transcribed spacer (ITS) sequences. Bot. J. Linn. Soc. 151: 365-373.
81. White, R. 2006. ILDIS. International Legume Database & Information Service. Retrieved October 2006 from http://www.ildis.org.
82. White, T.J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplifica- tion and direct sequencing of fungal ribosomal DNA for phylogenetics. Pp. 315-322 in: Innis, M.A., Gelfund, D.H., Sninsky, J.J. & White, T.J. (eds.), PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego.
83. Willdenow, C.L. 1809. Enumeratio Plantarum Horti Regii Botani Berolinensis, vol. 1. Libraria Scholae Realis, Berlin.
84. Wink, M. & Mohamed, G.I.A. 2003. Evolution of chemical defense traits in the Leguminosae: mapping of distribution patterns of secondary metabolites on a molecular phylog-eny inferred from nucleotide sequences of the rbcL gene. Biochem. Syst. Ecol. 31: 897-917.
85. Wojciechowski, M.F. 2003. Reconstructing the phylogeny of legumes (Leguminosae): an early 21st century perspective. Pp. 5-35 in: Klitgaard, B.B. & Bruneau, A. (eds.), Advances in Legume Systematics, part 10, Higher Level Systematics. Royal Botanic Gardens, Kew.
86. Wojciechowski, M.F., Lavin, M. & Sanderson, M.J. 2004. A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family. Amer. J. Bot. 91: 1846-1862.
87. Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Bioinformatics 13: 555-556.