Phylogeny of the festucoid grasses of subtribe Loliinae and allies (Poeae, Pooideae) inferred from ITS and trnL-F sequences

Molecular Phylogenetics and Evolution

Volumn 31, Issue 2, 2004, Pages 517-541

  Catalán, Pilar ^a   Torrecilla, Pedro ^a,c   López Rodríguez, Jose Ángel ^a   Olmstead, Richard G ^b  

^a UNIVERSITY OF ZARAGOZA   (Spain)

^b UNIVERSITY OF WASHINGTON   (United States)

^c University of Central Venezuela   (Venezuela)

Author keywords

Cynosurinae; Dactylidinae; Festucoids; ITS; Loliinae; Parapholiinae; Phylogeny and systematics; trnL F

Indexed keywords

CASTELLIA; CTENOPSIS; CUTANDIA; FESTUCA; LEUCOPOA; LOLIUM; MICROPYROPSIS; MICROPYRUM; NARDUROIDES; POACEAE; POEAE; POOIDEAE; PSILURUS; VULPIA; WANGENHEIMIA;

EID: 1942453287     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2003.08.025     Document Type: Article

References (94)

1. Ainscough, M.M., Barker, C.M., Stace, C.A., 1986. Natural hybrids between Festuca and species of Vulpia section Vulpia. Watsonia 16, 143-151.
2. Alexeev, E.B., 1977. K sistematike asiatskich ovsjaniz (Festuca). I. Podrod Drymanthele, Subulatae, Schedonorus, Leucopoa (To the systematics of Asian fescues (Festuca). I. Subgenera Drymanthele, Subulatae, Schedonorus, Leucopoa). Bjulleten' Moskovskogo Obshchestva Ispytatelei Prirody, Otdel Biologicheskii 82 (3), 95-102.
3. Alexeev, E.B., 1978. K sistematike asiatskich ovsjaniz (Festuca). 2. Podrod Festuca (To the systematics of Asian fescues (Festuca). 2. Subgenus Festuca). Bjulleten' Moskovskogo Obshchestva Ispytatelei Prirody, Otdel Biologicheskii 83 (4), 109-122.
4. Alexeev, E.B., 1980. Novye podrody i sekzii ovsjaniz (Festuca L.) Severnoj Ameriki i Meksiki (Festuca L. Subgenera et sectiones novae ex America boreali et Mexica). Novosti Sistematiki Nizshikh Rastenii 17, 42-53.
5. Alexeev, E.B., 1981. Novye taksoni roda Festuca (Poaceae) is Meksiki i Zentral'noj Ameriki (The new taxa of the genus Festuca (Poaceae) from Mexico and Central America). Botanicheskii 'Zhurnal (Moscow and Leningrad) 66, 1492-1501.
6. Alexeev, E.B., 1985. Novye rody slakov. Bjulleten' Moskovskogo Obshchestva Ispytatelei Prirody, Otdel Biologicheskii 90 (5), 102-109.
7. Alexeev, E.B., 1986. Ovsjanizy (Festuca L., Poaceae) Venezuely, Kolumbii i Ekvadora (Festuca L. (Poaceae) in Venezuela, Colombia et Ecuador). Novosti Sistematiki Nizshikh Rastenii 23, 5-23.
8. Baldwin, B.G., Sanderson, M.J., Porter, J.M., Wojciechowski, M.F., Campbell, C.S., Donoghue, M.J., 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82, 247-277.
9. Baker, W.J., Hedderson, T.A., Dransfield, J., 2000. Molecular phylogenetics of subfamily Calamoideae (Palmae) based on nrDNA ITS and cpDNA rps 16 intron sequence data. Mol. Phylogenet. Evol. 14 (2), 195-217.
10. Barker, C.M., Stace, C.A., 1982. Hybridization in the genera Vulpia and Festuca: the production of artificial F1 plants. Nordic J. Bot. 2, 435-444.
11. Barker, C.M., Stace, C.A., 1984. Hybridization in the genera Vulpia and Festuca (Poaceae): the characteristics of artificial hybrids. Nordic J. Bot. 4, 289-302.
12. Barker, C.M., Stace, C.A., 1986. Hybridization in the genera Vulpia and Festuca (Poaceae): meiotic behaviour of artificial hybrids. Nordic J. Bot. 6, 1-10.
13. Barker, F.K., Lutzoni, F.M., 2002. The utility of the Incongruence Length Difference test. Syst. Biol. 51, 625-637.
14. Borrill, M., 1972. Studies in Festuca. 3. The contribution of F. scariosa to the evolution of polyploids in section Bovinae and Scariosae. New Phytol. 71, 523-532.
15. Borrill, M., Kirby, M., Morgan, W.G., 1977. Studies in Festuca. 11. Interrelationships of some diploid ancestors of the polyploid broad-leaved fescues. New Phytol. 78, 661-674.
16. Briceño, B., Morillo, G., 1994. El género Festuca L. (Poaceae) en los páramos de Mérida. Ernstia 4 (3/4), 73-88.
17. Buckler, E.S., Holtsford, T.P., 1996a. Zea ribosomal repeat evolution and substitution patterns. Mol. Biol. Evol. 13, 623-632.
18. Buckler, E.S., Holtsford, T.P., 1996b. Zea systematics: ribosomal ITS evidence. Mol. Biol. Evol. 13, 612-622.
19. Buckler, E.S., Ippolito, A., Holtsford, T.P., 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145, 821-832.
20. Catalán, P., Kellogg, E.A., Olmstead, R.G., 1997. Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. Mol. Phylogenet. Evol. 8 (2), 150-166.
21. Charmet, G., Ravel, C., Balfourier, F., 1997. Phylogenetic analysis in the Festuca-Lolium complex using molecular markers and ITS rDNA. Theor. Appl. Genet. 94, 1038-1046.
22. Clayton, W.D., Renvoize, S.A., 1986. Genera Graminum: Grasses of the World, Kew Bull. Addit. series XIII. Royal Botanic Gardens, Kew.
23. Cotton, R., Stace, C.A., 1976. Taxonomy of the genus Vulpia (Gramineae). I. Chromosomes numbers and geographical distribution of the world species. Genetica 46, 235-255.
24. Cotton, R., Stace, C.A., 1977. Morphological and anatomical variation of Vulpia (Gramineae). Bot. Notiser 130, 173-187.
25. Darbyshire, S.J., Warwick, S.I., 1992. Phylogeny of North American Festuca (Poaceae) and related genera using chloroplast DNA retriction site variation. Can. J. Bot. 70, 2415-2429.
26. Davis, J.I., Soreng, R.J., 1993. Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation. Am. J. Bot. 80, 1444-1454.
27. DeBry, R.W., Olmstead, R.G., 2000. A simulation study of reduced tree-search effort in bootstrap resampling analysis. Syst. Biol. 49(1), 171-179.
28. Devesa, J.A., Romero-Zarco, C., 1996. 33. Mycropyropsis tuberosa Romero-Zarco and Cabezudo. Lagascalia 18 (2), 324.
29. Doyle, J.J., Doyle, J.L., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
30. Dubcovsky, J., Martínez, A., 1992. Distribución geográfica de los niveles de ploidía en Festuca. Parodiana 7, 91-99.
31. Farris, J.S., Källersjö, M., Kluge, A.G., Bult, C., 1994. Testing significance of incongruence. Cladistics 10, 315-319.
32. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (4), 783-791.
33. de Fuente, V., Ferrero, L.M., Ortúñez, E., 2001. Chromosome counts in the genus Festuca L. section Festuca (Poaceae) in the Iberian Peninsula. Bot. J. Linn. Soc. 137, 385-398.
34. Gaut, B.S., Tredway, L.P., Kubik, C., Gaut, R.L., Meyer, W., 2000. Phylogenetic relationships and genetic diversity among members of the Festuca-Lolium complex (Poaceae) based on ITS sequence data. Plant Syst. Evol. 224 (1-2), 33-53.
35. Gmelin, C.C., 1805. Flora badensis alsatica, vol. 1. Müller, Karlsruhe.
36. Gutierrez-Villarias, M.I., Homet, J., 1984. Estudio de un nuevo taxon del género Festuca L. sección Variae Hack, de los Picos de Europa. Bol. Cen. Idea 34, 131-153.
37. Hackel, E., 1882. Monographia Festucarum Europearum, Theodor Fischer. Kassel und Berlin, pp. 216, 4 1am.
38. Hackel, E., 1887. Gramineae. In: Engler, H.G.A., Prantl, K.A.E. (Eds.), Die Natürlichen Pflanzenfamilien, Teil 2, Abteilung 2. Engelmann, Leipzig, pp. 1-97.
39. Hackel, E., 1906. Gramineae novae. Repertorium Novarum Speciarum Regni Vegetabilis 2, 69-72.
40. Hillis, D.M., Wiens, J.J., 2000. Molecules versus morphology in systematics. Conflicts, artifacts, and misconceptions. In: Wiens, J.J. (Ed.), Phylogenetic Analysis of Morphological Data, Smithsonian Series in Comparative Evolutionary Biology. Smithsonian Institution Press, Washington, pp. 1-19.
41. Holub, J., 1984. New Genera in Phanerogamae [1-3]. Folia Geobot. Phytotaxon. 19, 95-99.
42. Holub, J., 1998. Reclassifications and new names in vascular plants 1. Preslia 70, 97-122.
43. Hsiao, C., Chatterton, N.J., Asay, K.H., Jensen, K.B.. 1995a. Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theor. Appl. Genet. 90 (3/4), 389-398.
44. Hsiao, C., Chatterton, N.J., Asay, K.H., Jensen, K.B., 1995b. Phylogenetic relationships of the monogenomic species of the wheat tribe triticeae (Poaceae) inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38, 211-223.
45. Hsiao, C., Jacobs, S.W.L., Chatterton, N.J., Asay, 1999. A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS). Austr. Syst. Bot. 11, 667-688.
46. Huelsenbeck, J.P., Ronquist, F., 2002. MRBAYES. Bayesian inference of phylogeny. V. 3.0. Bioinformatics 17 (8), 754-755.
47. Jauhar, P.P., 1993. Cytogenetics of the Festuca-Lolium complex. Springer, Berlin.
48. Jenkin, T.J., 1933. Interspecific and intergeneric hybrids in herbage grasses. Initial crosses. J. Genet. 28, 205-264.
49. Jenkin, T.J., 1955a. Interspecific and intergeneric hybrids in herbage grasses, XV. The breeding affinities of Festuca rubra. J. Genet. 53, 125-130.
50. Jenkin, T.J., 1955b. Interspecific and intergeneric hybrids in herbage grasses, XIV. The breeding affinities of Festuca ovina. J. Genet. 53, 118-124.
51. Johnson, L.A., Soltis, D.E., 1998. Assessing congruence: empirical examples from molecular data. In: Soltis, D.E., Soltis, P.S., Doyle, J.J. (Eds.). Molecular Systematics of Plants II. Kluwer Academic Publishers, Boston, pp. 297-348.
52. Kellogg, E.A., Watson, L., 1993. Phylogenetic studies of a large data set. I. Bambusoideae, Andropogonodae, and Pooideae (Gramineae). Bot. Rev. 59, 273-343.
53. Kellogg, E.A., Appels, R., Mason-Gamer, R.J., 1996. When gene trees tell different stories, incongruent gene trees for diploid genera of the Triticeae (Gramineae). Syst. Bot. 21, 321-347.
54. Kerguelén, M., Plonka, F., 1989. Les Festuca de la Flore de France (Corse comprise). Bull. Soc. Bot. Centre-Ouest N.S., Num. Spéc. 10, 1-368.
55. Krechetovich, V.I., Bobrov, E.G., 1934. Festuca L. s. str., In: Komarov, V.L., Rozhevits, R.Y., Shishkin, B.K. (Eds.), Flora SSSR, vol. 2. Akademija Nauk SSSR, Leningrad, pp. 497-535.
56. Krivotulenko, U., 1960. Novye sekzii roda Festuca L. (Generis Festuca L. sectiones novae). Bot. Mat. (Leningrad) 20, 48-67.
57. Leaché, A.D., Reeder, T.N., 2002. Molecular systematics of the Eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and bayesian approaches. Syst. Biol. 51, 44-68.
58. Lecointre, G., Philippe, H., Lanh van Le, H., Le Guyader, H., 1993. Species sampling has a major impact on phylogenetic inference. Mol. Phylogenet. Evol. 2, 205-224.
59. Lehväslaiho, H., Saura, A., Lokki, J., 1987. Chloroplast DNA variation in the grass tribe Festuceae. Theor. Appl. Genet. 74, 298-302.
60. Lewis, E.J., 1975. Festuca L. x Lolium L. = x Festulolium Aschers. & Graebner. In: Stace, C.A. (Ed.), Hybridization and the Flora of the British Isles. Academic Press, London, pp. 547-552.
61. Lowe, R.T., 1831. Primitiae faunae et florae maderae et portus sancti; sive species quaedam novae vel hactenus minus rite cognitae animalium et plantarum in his insulis degentium breviter descriptae. Trans. Cambr. Philos. Soc. 4, 1-70.
62. Malik, C.P., Thomas, P.T., 1966. Karyotypic studies in some Lolium and Festuca species. Caryologia 19, 167-196.
63. Mason-Gamer, R.J., Kellogg, E.A., 1996. Chloroplast DNA analysis of the monogenomic Triticeae: phylogenetic implications and genome-specific markers. In: Jauhar, P.P. (Ed.), Methods of Genome Analysis in Plants. CRC Press, Boca Raton, pp. 301-325.
64. Mason-Gamer, R.J., Kellogg, E.A., 1997. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst. Biol. 45, 524-545.
65. Mason-Gamer, R.J., Kellogg, E.A., 2000. Phylogenetic analysis of the Triticeae using the starch synthase gene, and a preliminary analysis of some North American Elymus species. In: Jacobs, W.L., Everett, J. (Eds.), Grasses. Systematics and Evolution. CSIRO, Melbourne, pp. 102-109.
66. Moore, L.A., Field, C.B., 2002. Using CAPS (cleaved amplified polymorphic sequences) to distinguish species in mixed root samples. GenBank (unpublished).
67. Nilsson, F., 1933. Ein spontaner Bastard zwischen Festuca rubra und Lolium perenne. Hereditas 18, 1-15.
68. Pilger, R., 1954. Das System der Gramineae. Bot. Jahrbücher für Systematik 74, 199-265.
69. Piper, C.V., 1906. North American species of Festuca. Contributions from the United States National Herbarium 10, 1-48.
70. Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (9), 817-818.
71. Rambaud, A., 1996. Sequence Alignment Editor (Se-Al). Ver. 1.0 alpha 1, Oxford University, Oxford.
72. Romero-Zarco, C., Cabezudo, B., 1983. Micropyropsis, género nuevo de Gramineae. Lagascalia 11 (2), 94-99.
73. Saint-Yves, A., 1924. Festucarum varietates novae (subgen. Eu-Festuca) (suite et fin). Bull. Soc. Bot. France 71, 119-135.
74. Sanderson, M.J., Doyle, J.J., 1992. Reconstruction of organismal and gene phylogenies from data on multigene: concerted evolution, homoplasy, and confidence. Syst. Biol. 41, 4-17.
75. Schippmann, U., 1991. Revision der europäischen Arten der Gattung Brachypodium Palisot de Beauvois (Poaceae). Boissiera 45, 1-249.
76. Soreng, R.J., Davis, J.I., Doyle, J.J., 1990. A phylogenetic analysis of chloroplast DNA restriction site variation in Poaceae subfam. Pooideae. Pl. Syst. Evol. 172, 83-97.
77. Soreng, R.J., Davis, J.I., 2000. Phylogenetic structure in Poaceae subfamily Pooideae as inferred from molecular and morphological characters: misclassification versus reticulation. In: Jacobs, S.W.L., Everett, J. (Eds.), Grasses: Systematics and Evolution. CSIRO, Melbourne, pp. 61-74.
78. Soreng, R.J., Terrell, E.E., 1998. Taxonomic notes on Schedonorus, a segregate genus from Festuca or Lolium, with a new nothogenus, x Schedo Lolium, and new combinations. Phytologia 83, 85-88.
79. Stace, C.A., 1981. Generic and infrageneric nomenclature of annual Poaceae: Poeae related to Vulpia and Desmazeria. Nordic J. Bot. 1, 17-26.
80. Stancik, D., Peterson, P.M., 2002. Two new species of Festuca from South America (Poaceae: Loliinae: sect. Subulatae). Sida 20, 21-29.
81. Swofford, D.L., 2002. PAUP*: Phylogenetic Analysis Using Parsimony and other methods, ver. 4.0 beta 10, Sinauer, Sunderland.
82. Taberlet, P., Gielly, L., Pautou, G., Bouvet, J., 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17, 1105-1109.
83. Terrell, E.E., 1968. A taxonomic revision of the genus Lolium. US Dept. Agric. Tech. Bull. 1392 p.
84. Torrecilla, P., Catalán, P., 2002. Phylogeny of broad-leaved and fine-leaved Festuca linages (Poaceae) based on nuclear ITS sequences. Syst. Bot. 27 (2), 241-251.
85. Torrecilla, P., López-Rodríguez, J.A., Stancik, D., Catalán, P., 2003a. Systematics of Festuca sects. Eskia Willk., Pseudatropis Kriv., Amphigenes (Janka) Tzvel., Pseudoscariosa Kriv., and Scariosae Hack, based on analysis of morphological characters and DNA sequences. Plant Syst. Evol. 239, 113-139.
86. Torrecilla, P., López-Rodríguez, J.A., Catalán, P., 2003. Phylogenetic relationships of Vulpia and related genera (Poeae, Poaceae) based on analisis of ITS and trnL-F sequences. Ann. Missouri Bot. Gard. (in press).
87. Tzvelev, N.N., 1971. K sistematike i filogenii ovsjaniz (Festuca L.) flory SSSR.I. Sistema roda i oshoriye naprav'enija evoljuzii. (On the taxonomy and phylogeny of genus Festuca L. of the U.S.S.R. flora. I. The system of the genus and main trends of evolution). Botanicheskii 'Zhurnal (Moscow and Leningrad) 56, 1252-1262.
88. Tzvelev, N.N., 1982. Poryadok zlaki (Poales). Zhizn'Rastenii 6, 341-378.
89. Tzvelev, N.N., 1999. Ob obeme I nomenklature nekotorykh rodov sosudistykh rastenii Evropeiskoi Rossii. (On the size and nomenclature of some genera of the vascular plants of European Russia). Bot. Zhurn. 84 (7), 109-118.
90. Tzvelev, N.N., 2000. Combinationes novae taxorum plantarum vascularium. Novit. Syst. Plant Vasc. 32, 181-183.
91. Watson, L., Dallwitz, M.J., 1992. The Grass Genera of the World. C.A.B: International, Wallingford, Oxon, UK.
92. Wendel, J.F., Doyle, J.J., 1998. Phylogenetic incongruence: window into genoma history and molecular evolution. In: Soltis, D.E., Soltis, P.S., Doyle, J.J. (Eds.), Molecular Systematics of Plants II. DNA Sequencing. Kluwer Academic, Boston, pp. 265-296.
93. Willis, A.J., 1975. Festuca L. x Vulpia C.C. Gmel. = x Festulpia Melderis ex Stace and Cotton. In: Stace, C.A. (Ed.), Hybridization and the Flora of the British Isles. Academic Press, London, pp. 552-554.
94. Yoder, A.D., Irwin, J.A., Payseur, B.A., 2001. Failure of the ILD to determine data combinability for Slow Loris phylogeny. Syst. Biol. 50, 408-424.