-
1
-
-
14244272868
-
PHENIX: building new software for automated crystallographic structure determination
-
Adams P.D., Grosse-Kunstleve R.W., Hung L.W., Ioerger T.R., McCoy A.J., Moriarty N.W., Read R.J., Sacchettini J.C., Sauter N.K., and Terwilliger T.C. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D Biol. Crystallogr. 58 (2002) 1948-1954
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
59849112364
-
Methicillin-resistant Staphylococcus aureus infections
-
Bartlett J.G. Methicillin-resistant Staphylococcus aureus infections. Top. HIV Med. 16 (2008) 151-155
-
(2008)
Top. HIV Med.
, vol.16
, pp. 151-155
-
-
Bartlett, J.G.1
-
4
-
-
33645984577
-
Magnesium-induced assembly of a complete DNA polymerase catalytic complex
-
Batra V.K., Beard W.A., Shock D.D., Krahn J.M., Pedersen L.C., and Wilson S.H. Magnesium-induced assembly of a complete DNA polymerase catalytic complex. Structure 14 (2006) 757-766
-
(2006)
Structure
, vol.14
, pp. 757-766
-
-
Batra, V.K.1
Beard, W.A.2
Shock, D.D.3
Krahn, J.M.4
Pedersen, L.C.5
Wilson, S.H.6
-
5
-
-
33644634986
-
Structure and mechanism of DNA polymerase Beta
-
Beard W.A., and Wilson S.H. Structure and mechanism of DNA polymerase Beta. Chem. Rev. 106 (2006) 361-382
-
(2006)
Chem. Rev.
, vol.106
, pp. 361-382
-
-
Beard, W.A.1
Wilson, S.H.2
-
6
-
-
0032917719
-
A new resistance gene, linB, conferring resistance to lincosamides by nucleotidylation in Enterococcus faecium HM1025
-
Bozdogan B., Berrezouga L., Kuo M.S., Yurek D.A., Farley K.A., Stockman B.J., and Leclercq R. A new resistance gene, linB, conferring resistance to lincosamides by nucleotidylation in Enterococcus faecium HM1025. Antimicrob. Agents Chemother. 43 (1999) 925-929
-
(1999)
Antimicrob. Agents Chemother.
, vol.43
, pp. 925-929
-
-
Bozdogan, B.1
Berrezouga, L.2
Kuo, M.S.3
Yurek, D.A.4
Farley, K.A.5
Stockman, B.J.6
Leclercq, R.7
-
7
-
-
0023779532
-
Inactivation of lincosaminide antibiotics in Staphylococcus. Identification of lincosaminide O-nucleotidyltransferases and comparison of the corresponding resistance genes
-
Brisson-Noel A., Delrieu P., Samain D., and Courvalin P. Inactivation of lincosaminide antibiotics in Staphylococcus. Identification of lincosaminide O-nucleotidyltransferases and comparison of the corresponding resistance genes. J. Biol. Chem. 263 (1988) 15880-15887
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 15880-15887
-
-
Brisson-Noel, A.1
Delrieu, P.2
Samain, D.3
Courvalin, P.4
-
8
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
CCP4 (Collaborative Computational Project, Number 4)
-
CCP4 (Collaborative Computational Project, Number 4). The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50 (1994) 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
9
-
-
0032716399
-
Kinetic mechanism of kanamycin nucleotidyltransferase from Staphylococcus aureus
-
Chen-Goodspeed M., Vanhooke J.L., Holden H.M., and Raushel F.M. Kinetic mechanism of kanamycin nucleotidyltransferase from Staphylococcus aureus. Bioorg. Chem. 27 (1999) 395-408
-
(1999)
Bioorg. Chem.
, vol.27
, pp. 395-408
-
-
Chen-Goodspeed, M.1
Vanhooke, J.L.2
Holden, H.M.3
Raushel, F.M.4
-
10
-
-
0022358111
-
Multiplicity of macrolide-lincosamide-streptogramin antibiotic resistance determinants
-
Courvalin P., Ounissi H., and Arthur M. Multiplicity of macrolide-lincosamide-streptogramin antibiotic resistance determinants. J. Antimicrob. Chemother. 16 Suppl A (1985) 91-100
-
(1985)
J. Antimicrob. Chemother.
, vol.16
, Issue.SUPPL. A
, pp. 91-100
-
-
Courvalin, P.1
Ounissi, H.2
Arthur, M.3
-
11
-
-
0030848695
-
Inhibition of aminoglycoside antibiotic resistance enzymes by protein kinase inhibitors
-
Daigle D.M., McKay G.A., and Wright G.D. Inhibition of aminoglycoside antibiotic resistance enzymes by protein kinase inhibitors. J. Biol. Chem. 272 (1997) 24755-24758
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 24755-24758
-
-
Daigle, D.M.1
McKay, G.A.2
Wright, G.D.3
-
12
-
-
0027974928
-
2.3 A crystal structure of the catalytic domain of DNA polymerase beta
-
Davies II J.F., Almassy R.J., Hostomska Z., Ferre R.A., and Hostomsky Z. 2.3 A crystal structure of the catalytic domain of DNA polymerase beta. Cell 76 (1994) 1123-1133
-
(1994)
Cell
, vol.76
, pp. 1123-1133
-
-
Davies II, J.F.1
Almassy, R.J.2
Hostomska, Z.3
Ferre, R.A.4
Hostomsky, Z.5
-
13
-
-
33646037670
-
An in vitro screen of bacterial lipopolysaccharide biosynthetic enzymes identifies an inhibitor of ADP-heptose biosynthesis
-
De Leon G.P., Elowe N.H., Koteva K.P., Valvano M.A., and Wright G.D. An in vitro screen of bacterial lipopolysaccharide biosynthetic enzymes identifies an inhibitor of ADP-heptose biosynthesis. Chem. Biol. 13 (2006) 437-441
-
(2006)
Chem. Biol.
, vol.13
, pp. 437-441
-
-
De Leon, G.P.1
Elowe, N.H.2
Koteva, K.P.3
Valvano, M.A.4
Wright, G.D.5
-
14
-
-
0036469941
-
Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase
-
Delarue M., Boule J.B., Lescar J., Expert-Bezancon N., Jourdan N., Sukumar N., Rougeon F., and Papanicolaou C. Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase. EMBO J. 21 (2002) 427-439
-
(2002)
EMBO J.
, vol.21
, pp. 427-439
-
-
Delarue, M.1
Boule, J.B.2
Lescar, J.3
Expert-Bezancon, N.4
Jourdan, N.5
Sukumar, N.6
Rougeon, F.7
Papanicolaou, C.8
-
15
-
-
0032518398
-
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution
-
Doublie S., Tabor S., Long A.M., Richardson C.C., and Ellenberger T. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution. Nature 391 (1998) 251-258
-
(1998)
Nature
, vol.391
, pp. 251-258
-
-
Doublie, S.1
Tabor, S.2
Long, A.M.3
Richardson, C.C.4
Ellenberger, T.5
-
16
-
-
0020417119
-
Resistance to macrolide, lincosamide and streptogramin antibiotics and degradation of lincosamide antibiotics in streptococci from bovine mastitis
-
Dutta G.N., and Devriese L.A. Resistance to macrolide, lincosamide and streptogramin antibiotics and degradation of lincosamide antibiotics in streptococci from bovine mastitis. J. Antimicrob. Chemother. 10 (1982) 403-408
-
(1982)
J. Antimicrob. Chemother.
, vol.10
, pp. 403-408
-
-
Dutta, G.N.1
Devriese, L.A.2
-
18
-
-
0032488583
-
Antibiotic inhibitors of the peptidyl transferase center. 1. Clindamycin as a composite analogue of the transfer RNA fragments L-Pro-Met and the D-ribosyl ring of adenosine
-
Fitzhugh A.L. Antibiotic inhibitors of the peptidyl transferase center. 1. Clindamycin as a composite analogue of the transfer RNA fragments L-Pro-Met and the D-ribosyl ring of adenosine. Bioorg. Med. Chem. Lett. 8 (1998) 87-92
-
(1998)
Bioorg. Med. Chem. Lett.
, vol.8
, pp. 87-92
-
-
Fitzhugh, A.L.1
-
19
-
-
0024290399
-
Alternative substrate and inhibition kinetics of aminoglycoside nucleotidyltransferase 2″-I in support of a Theorell-Chance kinetic mechanism
-
Gates C.A., and Northrop D.B. Alternative substrate and inhibition kinetics of aminoglycoside nucleotidyltransferase 2″-I in support of a Theorell-Chance kinetic mechanism. Biochemistry 27 (1988) 3826-3833
-
(1988)
Biochemistry
, vol.27
, pp. 3826-3833
-
-
Gates, C.A.1
Northrop, D.B.2
-
20
-
-
0035814899
-
Characterization of the transition-state structure of the reaction of kanamycin nucleotidyltransferase by heavy-atom kinetic isotope effects
-
Gerratana B., Frey P.A., and Cleland W.W. Characterization of the transition-state structure of the reaction of kanamycin nucleotidyltransferase by heavy-atom kinetic isotope effects. Biochemistry 40 (2001) 2972-2977
-
(2001)
Biochemistry
, vol.40
, pp. 2972-2977
-
-
Gerratana, B.1
Frey, P.A.2
Cleland, W.W.3
-
21
-
-
0032961270
-
ESPript: analysis of multiple sequence alignments in PostScript
-
Gouet P., Courcelle E., Stuart D.I., and Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 (1999) 305-308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
22
-
-
0343830619
-
Chemical studies of lincomycin. 1. The structure of lincomycin
-
Hoeksema H., Bannister B., Birkenmeyer R.D., Kagan F., Magerlein B.J., MacKellar F.A., Schroeder W., Slomp G., and Herr R.R. Chemical studies of lincomycin. 1. The structure of lincomycin. J. Am. Chem. Soc. 86 (1964) 4223-4224
-
(1964)
J. Am. Chem. Soc.
, vol.86
, pp. 4223-4224
-
-
Hoeksema, H.1
Bannister, B.2
Birkenmeyer, R.D.3
Kagan, F.4
Magerlein, B.J.5
MacKellar, F.A.6
Schroeder, W.7
Slomp, G.8
Herr, R.R.9
-
23
-
-
0029360327
-
DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily
-
Holm L., and Sander C. DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily. Trends Biochem. Sci. 20 (1995) 345-347
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 345-347
-
-
Holm, L.1
Sander, C.2
-
25
-
-
0030830868
-
Structure of an enzyme required for aminoglycoside antibiotic resistance reveals homology to eukaryotic protein kinases
-
Hon W.C., McKay G.A., Thompson P.R., Sweet R.M., Yang D.S., Wright G.D., and Berghuis A.M. Structure of an enzyme required for aminoglycoside antibiotic resistance reveals homology to eukaryotic protein kinases. Cell 89 (1997) 887-895
-
(1997)
Cell
, vol.89
, pp. 887-895
-
-
Hon, W.C.1
McKay, G.A.2
Thompson, P.R.3
Sweet, R.M.4
Yang, D.S.5
Wright, G.D.6
Berghuis, A.M.7
-
26
-
-
55249098618
-
Antimicrobial agents in treatment of MRSA infections
-
Johnson M.D., and Decker C.F. Antimicrobial agents in treatment of MRSA infections. Dis. Mon. 54 (2008) 793-800
-
(2008)
Dis. Mon.
, vol.54
, pp. 793-800
-
-
Johnson, M.D.1
Decker, C.F.2
-
27
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowski R.A., MacArthur M.W., Moss D.S., and Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26 (1993) 283-291
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
28
-
-
0021840794
-
Plasmid-mediated resistance to lincomycin by inactivation in Staphylococcus haemolyticus
-
Leclercq R., Carlier C., Duval J., and Courvalin P. Plasmid-mediated resistance to lincomycin by inactivation in Staphylococcus haemolyticus. Antimicrob. Agents Chemother. 28 (1985) 421-424
-
(1985)
Antimicrob. Agents Chemother.
, vol.28
, pp. 421-424
-
-
Leclercq, R.1
Carlier, C.2
Duval, J.3
Courvalin, P.4
-
29
-
-
3843067711
-
Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase
-
Martin G., Moglich A., Keller W., and Doublie S. Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase. J. Mol. Biol. 341 (2004) 911-925
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 911-925
-
-
Martin, G.1
Moglich, A.2
Keller, W.3
Doublie, S.4
-
30
-
-
46049095239
-
Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein
-
Meinke G., Ezeokonkwo C., Balbo P., Stafford W., Moore C., and Bohm A. Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein. Biochemistry 47 (2008) 6859-6869
-
(2008)
Biochemistry
, vol.47
, pp. 6859-6869
-
-
Meinke, G.1
Ezeokonkwo, C.2
Balbo, P.3
Stafford, W.4
Moore, C.5
Bohm, A.6
-
31
-
-
0242389785
-
Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure
-
Okabe M., Tomita K., Ishitani R., Ishii R., Takeuchi N., Arisaka F., Nureki O., and Yokoyama S. Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. EMBO J. 22 (2003) 5918-5927
-
(2003)
EMBO J.
, vol.22
, pp. 5918-5927
-
-
Okabe, M.1
Tomita, K.2
Ishitani, R.3
Ishii, R.4
Takeuchi, N.5
Arisaka, F.6
Nureki, O.7
Yokoyama, S.8
-
32
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
33
-
-
0028865333
-
Structural investigation of the antibiotic and ATP-binding sites in kanamycin nucleotidyltransferase
-
Pedersen L.C., Benning M.M., and Holden H.M. Structural investigation of the antibiotic and ATP-binding sites in kanamycin nucleotidyltransferase. Biochemistry 34 (1995) 13305-13311
-
(1995)
Biochemistry
, vol.34
, pp. 13305-13311
-
-
Pedersen, L.C.1
Benning, M.M.2
Holden, H.M.3
-
34
-
-
38649135737
-
Lincomycin resistance gene lnu(D) in Streptococcus uberis
-
Petinaki E., Guerin-Faublee V., Pichereau V., Villers C., Achard A., Malbruny B., and Leclercq R. Lincomycin resistance gene lnu(D) in Streptococcus uberis. Antimicrob. Agents Chemother. 52 (2008) 626-630
-
(2008)
Antimicrob. Agents Chemother.
, vol.52
, pp. 626-630
-
-
Petinaki, E.1
Guerin-Faublee, V.2
Pichereau, V.3
Villers, C.4
Achard, A.5
Malbruny, B.6
Leclercq, R.7
-
36
-
-
34247596021
-
Medicinal use of lincosamides and microbial resistance to them
-
Rezanka T., Spizek J., and Sigler K. Medicinal use of lincosamides and microbial resistance to them. Anti-Infect. Agents Med. Chem. 6 (2007) 133-144
-
(2007)
Anti-Infect. Agents Med. Chem.
, vol.6
, pp. 133-144
-
-
Rezanka, T.1
Spizek, J.2
Sigler, K.3
-
37
-
-
0027496278
-
Molecular structure of kanamycin nucleotidyltransferase determined to 3.0-A resolution
-
Sakon J., Liao H.H., Kanikula A.M., Benning M.M., Rayment I., and Holden H.M. Molecular structure of kanamycin nucleotidyltransferase determined to 3.0-A resolution. Biochemistry 32 (1993) 11977-11984
-
(1993)
Biochemistry
, vol.32
, pp. 11977-11984
-
-
Sakon, J.1
Liao, H.H.2
Kanikula, A.M.3
Benning, M.M.4
Rayment, I.5
Holden, H.M.6
-
38
-
-
0028136070
-
Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism
-
Sawaya M.R., Pelletier H., Kumar A., Wilson S.H., and Kraut J. Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science 264 (1994) 1930-1935
-
(1994)
Science
, vol.264
, pp. 1930-1935
-
-
Sawaya, M.R.1
Pelletier, H.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
39
-
-
0035950132
-
Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria
-
Schlunzen F., Zarivach R., Harms J., Bashan A., Tocilj A., Albrecht R., Yonath A., and Franceschi F. Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria. Nature 413 (2001) 814-821
-
(2001)
Nature
, vol.413
, pp. 814-821
-
-
Schlunzen, F.1
Zarivach, R.2
Harms, J.3
Bashan, A.4
Tocilj, A.5
Albrecht, R.6
Yonath, A.7
Franceschi, F.8
-
41
-
-
9744275238
-
Lincosamides: chemical structure, biosynthesis, mechanism of action, resistance, and applications
-
Spizek J., Novotna J., and Rezanka T. Lincosamides: chemical structure, biosynthesis, mechanism of action, resistance, and applications. Adv. Appl. Microbiol. 56 (2004) 121-154
-
(2004)
Adv. Appl. Microbiol.
, vol.56
, pp. 121-154
-
-
Spizek, J.1
Novotna, J.2
Rezanka, T.3
-
42
-
-
0032518374
-
A mechanism for all polymerases
-
Steitz T.A. A mechanism for all polymerases. Nature 391 (1998) 231-232
-
(1998)
Nature
, vol.391
, pp. 231-232
-
-
Steitz, T.A.1
-
43
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
44
-
-
0037018922
-
Mechanism of aminoglycoside antibiotic kinase APH(3′)-IIIa: role of the nucleotide positioning loop
-
Thompson P.R., Boehr D.D., Berghuis A.M., and Wright G.D. Mechanism of aminoglycoside antibiotic kinase APH(3′)-IIIa: role of the nucleotide positioning loop. Biochemistry 41 (2002) 7001-7007
-
(2002)
Biochemistry
, vol.41
, pp. 7001-7007
-
-
Thompson, P.R.1
Boehr, D.D.2
Berghuis, A.M.3
Wright, G.D.4
-
45
-
-
17444421169
-
Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance
-
Tu D., Blaha G., Moore P.B., and Steitz T.A. Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance. Cell 121 (2005) 257-270
-
(2005)
Cell
, vol.121
, pp. 257-270
-
-
Tu, D.1
Blaha, G.2
Moore, P.B.3
Steitz, T.A.4
-
46
-
-
0030561461
-
A spectrophotometric method to measure enzymatic activity in reactions that generate inorganic pyrophosphate
-
Upson R.H., Haugland R.P., and Malekzadeh M.N. A spectrophotometric method to measure enzymatic activity in reactions that generate inorganic pyrophosphate. Anal. Biochem. 243 (1996) 41-45
-
(1996)
Anal. Biochem.
, vol.243
, pp. 41-45
-
-
Upson, R.H.1
Haugland, R.P.2
Malekzadeh, M.N.3
-
47
-
-
0022998264
-
Gentamicin nucleotidyltransferase. Stereochemical inversion at phosphorus in enzymatic 2′-deoxyadenylyl transfer to tobramycin
-
Van Pelt J.E., Iyengar R., and Frey P.A. Gentamicin nucleotidyltransferase. Stereochemical inversion at phosphorus in enzymatic 2′-deoxyadenylyl transfer to tobramycin. J. Biol. Chem. 261 (1986) 15995-15999
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 15995-15999
-
-
Van Pelt, J.E.1
Iyengar, R.2
Frey, P.A.3
-
48
-
-
33847151750
-
The antibiotic resistome: the nexus of chemical and genetic diversity
-
Wright G.D. The antibiotic resistome: the nexus of chemical and genetic diversity. Nat. Rev. Microbiol. 5 (2007) 175-186
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 175-186
-
-
Wright, G.D.1
-
49
-
-
0033135707
-
Crystal structure of an aminoglycoside 6′-N-acetyltransferase: defining the GCN5-related N-acetyltransferase superfamily fold
-
Wybenga-Groot L.E., Draker K., Wright G.D., and Berghuis A.M. Crystal structure of an aminoglycoside 6′-N-acetyltransferase: defining the GCN5-related N-acetyltransferase superfamily fold. Structure 7 (1999) 497-507
-
(1999)
Structure
, vol.7
, pp. 497-507
-
-
Wybenga-Groot, L.E.1
Draker, K.2
Wright, G.D.3
Berghuis, A.M.4
|