-
1
-
-
0037188910
-
Bidirectional gene organization: A common architectural feature of the human genome
-
DOI 10.1016/S0092-8674(02)00758-4
-
Adachi, N., and M. R. Lieber. 2002. Bidirectional gene organization: a common architectural feature of the human genome. Cell 109:807-809. (Pubitemid 34785996)
-
(2002)
Cell
, vol.109
, Issue.7
, pp. 807-809
-
-
Adachi, N.1
Lieber, M.R.2
-
2
-
-
63449112088
-
Definition of herpes simplex virus type 1 helper activities for adeno-associated virus early replication events
-
Alazard-Dany, N., A. Nicolas, A. Ploquin, R. Strasser, A. Greco, A. L. Epstein, C. Fraefel, and A. Salvetti. 2009. Definition of herpes simplex virus type 1 helper activities for adeno-associated virus early replication events. PLoS Pathog. 5:e1000340.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Alazard-Dany, N.1
Nicolas, A.2
Ploquin, A.3
Strasser, R.4
Greco, A.5
Epstein, A.L.6
Fraefel, C.7
Salvetti, A.8
-
3
-
-
0037303609
-
Identification and characterization of an adeno-associated virus integration site in CV-1 cells from the African green monkey
-
Amiss, T. J., D. M. McCarty, A. Skulimowski, and R. J. Samulski. 2003. Identification and characterization of an adeno-associated virus integration site in CV-1 cells from the African green monkey. J. Virol. 77:1904-1915.
-
(2003)
J. Virol.
, vol.77
, pp. 1904-1915
-
-
Amiss, T.J.1
McCarty, D.M.2
Skulimowski, A.3
Samulski, R.J.4
-
4
-
-
8444235368
-
Content analysis of the core promoter region of human genes
-
Bajic, V. B., V. Choudhary, and C. K. Hock. 2004. Content analysis of the core promoter region of human genes. In Silico Biol. 4:109-125.
-
(2004)
Silico Biol.
, vol.4
, pp. 109-125
-
-
Bajic, V.B.1
Choudhary, V.2
Hock, C.K.3
-
5
-
-
0028099692
-
The regulatory Rep protein of adeno-associated virus binds to sequences within the c-H-ras promoter
-
Batchu, R. B., R. M. Kotin, and P. L. Hermonat. 1994. The regulatory Rep protein of adeno-associated virus binds to sequences within the c-H-ras promoter. Cancer Lett. 86:23-31.
-
(1994)
Cancer Lett.
, vol.86
, pp. 23-31
-
-
Batchu, R.B.1
Kotin, R.M.2
Hermonat, P.L.3
-
6
-
-
36249027278
-
Parvoviridae
-
D. M. Knipe and P. M. Howley (ed.), 5th ed., Lippincott Williams & Wilkins, Philadelphia, PA
-
Berns, K. I., and C. R. Parrish. 2007. Parvoviridae, p. 2437-2477. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 5th ed., vol.2. Lippincott Williams & Wilkins, Philadelphia, PA.
-
(2007)
Fields Virology
, vol.2
, pp. 2437-2477
-
-
Berns, K.I.1
Parrish, C.R.2
-
7
-
-
0032853990
-
Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicase activity and transesterification
-
Brister, J. R., and N. Muzyczka. 1999. Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicase activity and transesterification. J. Virol. 73:9325-9336.
-
(1999)
J. Virol.
, vol.73
, pp. 9325-9336
-
-
Brister, J.R.1
Muzyczka, N.2
-
8
-
-
0033952245
-
A chimeric protein containing the N terminus of the adeno-associated virus Rep protein recognizes its target site in an in vivo assay
-
DOI 10.1128/JVI.74.5.2372-2382.2000
-
Cathomen, T., D. Collete, and M. D. Weitzman. 2000. A chimeric protein containing the N terminus of the adeno-associated virus Rep protein recognizes its target site in an in vivo assay. J. Virol. 74:2372-2382. (Pubitemid 30091492)
-
(2000)
Journal of Virology
, vol.74
, Issue.5
, pp. 2372-2382
-
-
Cathomen, T.1
Collete, D.2
Weitzman, M.D.3
-
9
-
-
0035909984
-
A genetic screen identifies a cellular regulator of adeno-associated virus
-
Cathomen, T., T. H. Stracker, L. B. Gilbert, and M. D. Weitzman. 2001. A genetic screen identifies a cellular regulator of adeno-associated virus. Proc. Natl. Acad. Sci. USA 98:14991-14996.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14991-14996
-
-
Cathomen, T.1
Stracker, T.H.2
Gilbert, L.B.3
Weitzman, M.D.4
-
10
-
-
0024356710
-
Adeno-associated virus P5 promoter contains an adenovirus E1A-inducible element and a binding site for the major late transcription factor
-
Chang, L. S., Y. Shi, and T. Shenk. 1989. Adeno-associated virus P5 promoter contains an adenovirus E1A-inducible element and a binding site for the major late transcription factor. J. Virol. 63:3479-3488. (Pubitemid 19181410)
-
(1989)
Journal of Virology
, vol.63
, Issue.8
, pp. 3479-3488
-
-
Chang, L.-S.1
Shi, Y.2
Shenk, T.3
-
11
-
-
0028143560
-
Sequence requirements for stable binding and function of Rep68 on the adeno-associated virus type 2 inverted terminal repeats
-
Chiorini, J. A., S. M. Wiener, R. A. Owens, S. R. Kyostio, R. M. Kotin, and B. Safer. 1994. Sequence requirements for stable binding and function of Rep68 on the adeno-associated virus type 2 inverted terminal repeats. J. Virol. 68:7448-7457.
-
(1994)
J. Virol.
, vol.68
, pp. 7448-7457
-
-
Chiorini, J.A.1
Wiener, S.M.2
Owens, R.A.3
Kyostio, S.R.4
Kotin, R.M.5
Safer, B.6
-
12
-
-
0028865491
-
Determination of adeno-associated virus Rep68 and Rep78 binding sites by random sequence oligonucleotide selection
-
Chiorini, J. A., L. Yang, B. Safer, and R. M. Kotin. 1995. Determination of adeno-associated virus Rep68 and Rep78 binding sites by random sequence oligonucleotide selection. J. Virol. 69:7334-7338.
-
(1995)
J. Virol.
, vol.69
, pp. 7334-7338
-
-
Chiorini, J.A.1
Yang, L.2
Safer, B.3
Kotin, R.M.4
-
13
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core, L. J., J. J. Waterfall, and J. T. Lis. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
14
-
-
35948962380
-
Site-specific integration by adeno-associated virus
-
J. R. Kerr, S. F. Cotmore, M. E. Bloom, R. M. Linden, and C. R. Parrish (ed.), Hodder Arnold, London, England
-
Dutheil, N., and R. M. Linden. 2005. Site-specific integration by adeno-associated virus, p. 213-236. In J. R. Kerr, S. F. Cotmore, M. E. Bloom, R. M. Linden, and C. R. Parrish (ed.), Parvoviruses. Hodder Arnold, London, England.
-
(2005)
Parvoviruses
, pp. 213-236
-
-
Dutheil, N.1
Linden, R.M.2
-
15
-
-
0034712849
-
Adeno-associated virus site-specifically integrates into a muscle-specific DNA region
-
Dutheil, N., F. Shi, T. Dupressoir, and R. M. Linden. 2000. Adeno-associated virus site-specifically integrates into a muscle-specific DNA region. Proc. Natl. Acad. Sci. USA 97:4862-4866.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 4862-4866
-
-
Dutheil, N.1
Shi, F.2
Dupressoir, T.3
Linden, R.M.4
-
16
-
-
3543100253
-
Characterization of the mouse adeno-associated virus AAVS1 ortholog
-
DOI 10.1128/JVI.78.16.8917-8921.2004
-
Dutheil, N., M. Yoon-Robarts, P. Ward, E. Henckaerts, L. Skrabanek, K. I. Berns, F. Campagne, and R. M. Linden. 2004. Characterization of the mouse adeno-associated virus AAVS1 ortholog. J. Virol. 78:8917-8921. (Pubitemid 39025157)
-
(2004)
Journal of Virology
, vol.78
, Issue.16
, pp. 8917-8921
-
-
Dutheil, N.1
Yoon-Robarts, M.2
Ward, P.3
Henckaerts, E.4
Skrabanek, L.5
Berns, K.I.6
Campagne, F.7
Linden, R.M.8
-
17
-
-
42649099973
-
In vitro analysis of promoter activity in Muller cells
-
Geller, S. F., P. S. Ge, M. Visel, and J. G. Flannery. 2008. In vitro analysis of promoter activity in Muller cells. Mol. Vis. 14:691-705.
-
(2008)
Mol. Vis.
, vol.14
, pp. 691-705
-
-
Geller, S.F.1
Ge, P.S.2
Visel, M.3
Flannery, J.G.4
-
18
-
-
57849105533
-
The antisense transcriptomes of human cells
-
He, Y., B. Vogelstein, V. E. Velculescu, N. Papadopoulos, and K. W. Kinzler. 2008. The antisense transcriptomes of human cells. Science 322:1855-1857.
-
(2008)
Science
, vol.322
, pp. 1855-1857
-
-
He, Y.1
Vogelstein, B.2
Velculescu, V.E.3
Papadopoulos, N.4
Kinzler, K.W.5
-
19
-
-
66149108014
-
Site-specific integration of adeno-associated virus involves partial duplication of the target locus
-
Henckaerts, E., N. Dutheil, N. Zeltner, S. Kattman, E. Kohlbrenner, P. Ward, N. Clement, P. Rebollo, M. Kennedy, G. M. Keller, and R. M. Linden. 2009. Site-specific integration of adeno-associated virus involves partial duplication of the target locus. Proc. Natl. Acad. Sci. USA 106:7571-7576.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 7571-7576
-
-
Henckaerts, E.1
Dutheil, N.2
Zeltner, N.3
Kattman, S.4
Kohlbrenner, E.5
Ward, P.6
Clement, N.7
Rebollo, P.8
Kennedy, M.9
Keller, G.M.10
Linden, R.M.11
-
20
-
-
0036671409
-
Structural unity among viral origin binding proteins: Crystal structure of the nuclease domain of adeno-associated virus Rep
-
Hickman, A. B., D. R. Ronning, R. M. Kotin, and F. Dyda. 2002. Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep. Mol. Cell 10:327-337.
-
(2002)
Mol. Cell
, vol.10
, pp. 327-337
-
-
Hickman, A.B.1
Ronning, D.R.2
Kotin, R.M.3
Dyda, F.4
-
21
-
-
0029119779
-
Mutational analysis of adeno-associated virus Rep protein-mediated inhibition of heterologous and homologous promoters
-
Horer, M., S. Weger, K. Butz, F. Hoppe-Seyler, C. Geisen, and J. A. Kleinschmidt. 1995. Mutational analysis of adeno-associated virus Rep protein-mediated inhibition of heterologous and homologous promoters. J. Virol. 69:5485-5496.
-
(1995)
J. Virol.
, vol.69
, pp. 5485-5496
-
-
Horer, M.1
Weger, S.2
Butz, K.3
Hoppe-Seyler, F.4
Geisen, C.5
Kleinschmidt, J.A.6
-
22
-
-
0024354951
-
Factors that bind to adeno-associated virus terminal repeats
-
Im, D. S., and N. Muzyczka. 1989. Factors that bind to adeno-associated virus terminal repeats. J. Virol. 63:3095-3104.
-
(1989)
J. Virol.
, vol.63
, pp. 3095-3104
-
-
Im, D.S.1
Muzyczka, N.2
-
23
-
-
0025362618
-
The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity
-
DOI 10.1016/0092-8674(90)90526-K
-
Im, D. S., and N. Muzyczka. 1990. The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity. Cell 61:447-457. (Pubitemid 20168999)
-
(1990)
Cell
, vol.61
, Issue.3
, pp. 447-457
-
-
Im, D.-S.1
Muzyczka, N.2
-
24
-
-
4344596245
-
Structure of adeno-associated virus type 2 Rep40-ADP complex: Insight into nucleotide recognition and catalysis by superfamily 3 helicases
-
James, J. A., A. K. Aggarwal, R. M. Linden, and C. R. Escalante. 2004. Structure of adeno-associated virus type 2 Rep40-ADP complex: insight into nucleotide recognition and catalysis by superfamily 3 helicases. Proc. Natl. Acad. Sci. USA 101:12455-12460.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12455-12460
-
-
James, J.A.1
Aggarwal, A.K.2
Linden, R.M.3
Escalante, C.R.4
-
25
-
-
0041630781
-
Crystal structure of the SF3 helicase from adeno-associated virus type 2
-
James, J. A., C. R. Escalante, M. Yoon-Robarts, T. A. Edwards, R. M. Linden, and A. K. Aggarwal. 2003. Crystal structure of the SF3 helicase from adeno-associated virus type 2. Structure 11:1025-1035.
-
(2003)
Structure
, vol.11
, pp. 1025-1035
-
-
James, J.A.1
Escalante, C.R.2
Yoon-Robarts, M.3
Edwards, T.A.4
Linden, R.M.5
Aggarwal, A.K.6
-
26
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama, S., Y. Tomaru, T. Kasukawa, K. Waki, M. Nakanishi, M. Nakamura, H. Nishida, C. C. Yap, M. Suzuki, J. Kawai, H. Suzuki, P. Carninci, Y. Hayashizaki, C. Wells, M. Frith, T. Ravasi, K. C. Pang, J. Hallinan, J. Mattick, D. A. Hume, L. Lipovich, S. Batalov, P. G. Engstrom, Y. Mizuno, M. A. Faghihi, A. Sandelin, A. M. Chalk, S. Mottagui-Tabar, Z. Liang, B. Lenhard, and C. Wahlestedt. 2005. Antisense transcription in the mammalian transcriptome. Science 309:1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
Suzuki, H.11
Carninci, P.12
Hayashizaki, Y.13
Wells, C.14
Frith, M.15
Ravasi, T.16
Pang, K.C.17
Hallinan, J.18
Mattick, J.19
Hume, D.A.20
Lipovich, L.21
Batalov, S.22
Engstrom, P.G.23
Mizuno, Y.24
Faghihi, M.A.25
Sandelin, A.26
Chalk, A.M.27
Mottagui-Tabar, S.28
Liang, Z.29
Lenhard, B.30
Wahlestedt, C.31
more..
-
27
-
-
0024322243
-
Organization of adeno-associated virus DNA in latently infected Detroit 6 cells
-
DOI 10.1016/0042-6822(89)90437-6
-
Kotin, R. M., and K. I. Berns. 1989. Organization of adeno-associated virus DNA in latently infected Detroit 6 cells. Virology 170:460-467. (Pubitemid 19162560)
-
(1989)
Virology
, vol.170
, Issue.2
, pp. 460-467
-
-
Kotin, R.M.1
Berns, K.I.2
-
28
-
-
0027092001
-
Characterization of a preferred site on human chromosome 19q for integration of adeno-associated virus DNA by non-homologous recombination
-
Kotin, R. M., R. M. Linden, and K. I. Berns. 1992. Characterization of a preferred site on human chromosome 19q for integration of adeno-associated virus DNA by non-homologous recombination. EMBO J. 11:5071-5078.
-
(1992)
EMBO J.
, vol.11
, pp. 5071-5078
-
-
Kotin, R.M.1
Linden, R.M.2
Berns, K.I.3
-
29
-
-
0025721086
-
Mapping and direct visualization of a region-specific viral DNA integration site on chromosome 19q13-qter
-
Kotin, R. M., J. C. Menninger, D. C. Ward, and K. I. Berns. 1991. Mapping and direct visualization of a region-specific viral DNA integration site on chromosome 19q13-qter. Genomics 10:831-834.
-
(1991)
Genomics
, vol.10
, pp. 831-834
-
-
Kotin, R.M.1
Menninger, J.C.2
Ward, D.C.3
Berns, K.I.4
-
30
-
-
0025214094
-
Site-specific integration by adeno-associated virus
-
Kotin, R. M., M. Siniscalco, R. J. Samulski, X. D. Zhu, L. Hunter, C. A. Laughlin, S. McLaughlin, N. Muzyczka, M. Rocchi, and K. I. Berns. 1990. Site-specific integration by adeno-associated virus. Proc. Natl. Acad. Sci. USA 87:2211-2215.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 2211-2215
-
-
Kotin, R.M.1
Siniscalco, M.2
Samulski, R.J.3
Zhu, X.D.4
Hunter, L.5
Laughlin, C.A.6
McLaughlin, S.7
Muzyczka, N.8
Rocchi, M.9
Berns, K.I.10
-
31
-
-
0028331815
-
19 mRNA levels
-
Kyostio, S. R., R. A. Owens, M. D. Weitzman, B. A. Antoni, N. Chejanovsky, and B. J. Carter. 1994. Analysis of adeno-associated virus (AAV) wild-type and mutant Rep proteins for their abilities to negatively regulate AAV p5 and p19 mRNA levels. J. Virol. 68:2947-2957. (Pubitemid 24129742)
-
(1994)
Journal of Virology
, vol.68
, Issue.5
, pp. 2947-2957
-
-
Kyostio, S.R.M.1
Owens, R.A.2
Weitzman, M.D.3
Antoni, B.A.4
Chejanovsky, N.5
Carter, B.J.6
-
32
-
-
0028842873
-
Negative regulation of the adeno-associated virus (AAV) P5 promoter involves both the P5 rep binding site and the consensus ATP-binding motif of the AAV Rep68 protein
-
Kyostio, S. R., R. S. Wonderling, and R. A. Owens. 1995. Negative regulation of the adeno-associated virus (AAV) P5 promoter involves both the P5 rep binding site and the consensus ATP-binding motif of the AAV Rep68 protein. J. Virol. 69:6787-6796.
-
(1995)
J. Virol.
, vol.69
, pp. 6787-6796
-
-
Kyostio, S.R.1
Wonderling, R.S.2
Owens, R.A.3
-
33
-
-
0036311953
-
Studies of the mechanism of transactivation of the adeno-associated virus p19 promoter by Rep protein
-
Lackner, D. F., and N. Muzyczka. 2002. Studies of the mechanism of transactivation of the adeno-associated virus p19 promoter by Rep protein. J. Virol. 76:8225-8235.
-
(2002)
J. Virol.
, vol.76
, pp. 8225-8235
-
-
Lackner, D.F.1
Muzyczka, N.2
-
34
-
-
0033798719
-
Selective cleavage of AAVS1 substrates by the adeno-associated virus type 2 Rep68 protein is dependent on topological and sequence constraints
-
DOI 10.1128/JVI.74.19.8831-8842.2000
-
Lamartina, S., G. Ciliberto, and C. Toniatti. 2000. Selective cleavage of AAVS1 substrates by the adeno-associated virus type 2 rep68 protein is dependent on topological and sequence constraints. J. Virol. 74:8831-8842. (Pubitemid 30759581)
-
(2000)
Journal of Virology
, vol.74
, Issue.19
, pp. 8831-8842
-
-
Lamartina, S.1
Ciliberto, G.2
Toniatti, C.3
-
35
-
-
0033861721
-
Characteristics of the adeno-associated virus preintegration site in human chromosome 19: Open chromatin conformation and transcription-competent environment
-
DOI 10.1128/JVI.74.16.7671-7677.2000
-
Lamartina, S., E. Sporeno, E. Fattori, and C. Toniatti. 2000. Characteristics of the adeno-associated virus preintegration site in human chromosome 19: open chromatin conformation and transcription-competent environment. J. Virol. 74:7671-7677. (Pubitemid 30613116)
-
(2000)
Journal of Virology
, vol.74
, Issue.16
, pp. 7671-7677
-
-
Lamartina, S.1
Sporeno, E.2
Fattori, E.3
Toniatti, C.4
-
36
-
-
58149458863
-
A small regulatory element from chromosome 19 enhances liver-specific gene expression
-
Li, C., M. Hirsch, P. Carter, A. Asokan, X. Zhou, Z. Wu, and R. J. Samulski. 2009. A small regulatory element from chromosome 19 enhances liver-specific gene expression. Gene Ther. 16:43-51.
-
(2009)
Gene Ther.
, vol.16
, pp. 43-51
-
-
Li, C.1
Hirsch, M.2
Carter, P.3
Asokan, A.4
Zhou, X.5
Wu, Z.6
Samulski, R.J.7
-
37
-
-
34250324685
-
Transcription factor binding and modified histones in human bidirectional promoters
-
DOI 10.1101/gr.5623407
-
Lin, J. M., P. J. Collins, N. D. Trinklein, Y. Fu, H. Xi, R. M. Myers, and Z. Weng. 2007. Transcription factor binding and modified histones in human bidirectional promoters. Genome Res. 17:818-827. (Pubitemid 46919717)
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 818-827
-
-
Lin, J.M.1
Collins, P.J.2
Trinklein, N.D.3
Fu, Y.4
Xi, H.5
Myers, R.M.6
Weng, Z.7
-
38
-
-
0029858907
-
Site-specific integration by adeno-associated virus
-
Linden, R. M., P. Ward, C. Giraud, E. Winocour, and K. I. Berns. 1996. Site-specific integration by adeno-associated virus. Proc. Natl. Acad. Sci. USA 93:11288-11294.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 11288-11294
-
-
Linden, R.M.1
Ward, P.2
Giraud, C.3
Winocour, E.4
Berns, K.I.5
-
39
-
-
0029836836
-
The recombination signals for adeno-associated virus site-specific integration
-
Linden, R. M., E. Winocour, and K. I. Berns. 1996. The recombination signals for adeno-associated virus site-specific integration. Proc. Natl. Acad. Sci. USA 93:7966-7972.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7966-7972
-
-
Linden, R.M.1
Winocour, E.2
Berns, K.I.3
-
40
-
-
0028338651
-
Interaction of the adeno-associated virus Rep protein with a sequence within the a palindrome of the viral terminal repeat
-
McCarty, D. M., J. H. Ryan, S. Zolotukhin, X. Zhou, and N. Muzyczka. 1994. Interaction of the adeno-associated virus Rep protein with a sequence within the A palindrome of the viral terminal repeat. J. Virol. 68:4998-5006.
-
(1994)
J. Virol.
, vol.68
, pp. 4998-5006
-
-
McCarty, D.M.1
Ryan, J.H.2
Zolotukhin, S.3
Zhou, X.4
Muzyczka, N.5
-
41
-
-
0028290387
-
Identification of linear DNA sequences that specifically bind the adeno- Associated virus rep protein
-
McCarty, D. M., D. J. Pereira, I. Zolotukhin, X. Zhou, J. H. Ryan, and N. Muzyczka. 1994. Identification of linear DNA sequences that specifically bind the adeno-associated virus Rep protein. J. Virol. 68:4988-4997. (Pubitemid 24226565)
-
(1994)
Journal of Virology
, vol.68
, Issue.8
, pp. 4988-4997
-
-
McCarty, D.M.1
Pereira, D.J.2
Zolotukhin, I.3
Zhou, X.4
Ryan, J.H.5
Muzyczka, N.6
-
42
-
-
0034084825
-
DNA sequence motifs which direct adeno-associated virus site-specific integration in a model system
-
DOI 10.1128/JVI.74.13.6213-6216.2000
-
Meneses, P., K. I. Berns, and E. Winocour. 2000. DNA sequence motifs which direct adeno-associated virus site-specific integration in a model system. J. Virol. 74:6213-6216. (Pubitemid 30412997)
-
(2000)
Journal of Virology
, vol.74
, Issue.13
, pp. 6213-6216
-
-
Meneses, P.1
Berns, K.I.2
Winocour, E.3
-
43
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil, H., C. Malabat, Y. d'Aubenton-Carafa, Z. Xu, L. M. Steinmetz, and A. Jacquier. 2009. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457:1038-1042.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
D'Aubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
Jacquier, A.6
-
44
-
-
0033574048
-
Analysis of the consensus binding sequence and the DNA-binding domain of ZF5
-
Obata, T., A. Yanagidani, K. Yokoro, M. Numoto, and S. Yamamoto. 1999. Analysis of the consensus binding sequence and the DNA-binding domain of ZF5. Biochem. Biophys. Res. Commun. 255:528-534.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.255
, pp. 528-534
-
-
Obata, T.1
Yanagidani, A.2
Yokoro, K.3
Numoto, M.4
Yamamoto, S.5
-
45
-
-
0031014018
-
The adeno-associated virus (AAV) Rep protein acts as both a repressor and an activator to regulate AAV transcription during a productive infection
-
Pereira, D. J., D. M. McCarty, and N. Muzyczka. 1997. The adeno-associated virus (AAV) Rep protein acts as both a repressor and an activator to regulate AAV transcription during a productive infection. J. Virol. 71:1079-1088.
-
(1997)
J. Virol.
, vol.71
, pp. 1079-1088
-
-
Pereira, D.J.1
McCarty, D.M.2
Muzyczka, N.3
-
46
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker, P., J. Nielsen, S. Kammler, S. Lykke-Andersen, M. S. Christensen, C. K. Mapendano, M. H. Schierup, and T. H. Jensen. 2008. RNA exosome depletion reveals transcription upstream of active human promoters. Science 322:1851-1854.
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
Lykke-Andersen, S.4
Christensen, M.S.5
Mapendano, C.K.6
Schierup, M.H.7
Jensen, T.H.8
-
47
-
-
38449117245
-
Processing of adeno-associated virus RNA
-
Qiu, J., and D. Pintel. 2008. Processing of adeno-associated virus RNA. Front. Biosci. 13:3101-3115.
-
(2008)
Front. Biosci.
, vol.13
, pp. 3101-3115
-
-
Qiu, J.1
Pintel, D.2
-
48
-
-
0036094101
-
The adeno-associated virus type 2 Rep protein regulates RNA processing via interaction with the transcription template
-
Qiu, J., and D. J. Pintel. 2002. The adeno-associated virus type 2 Rep protein regulates RNA processing via interaction with the transcription template. Mol. Cell. Biol. 22:3639-3652.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 3639-3652
-
-
Qiu, J.1
Pintel, D.J.2
-
49
-
-
0032538803
-
NTF2 mediates nuclear import of Ran
-
Ribbeck, K., G. Lipowsky, H. M. Kent, M. Stewart, and D. Gorlich. 1998. NTF2 mediates nuclear import of Ran. EMBO J. 17:6587-6598. (Pubitemid 28521793)
-
(1998)
EMBO Journal
, vol.17
, Issue.22
, pp. 6587-6598
-
-
Ribbeck, K.1
Lipowsky, G.2
Kent, H.M.3
Stewart, M.4
Gorlich, D.5
-
50
-
-
0030026754
-
Sequence requirements for binding of Rep68 to the adeno-associated virus terminal repeats
-
Ryan, J. H., S. Zolotukhin, and N. Muzyczka. 1996. Sequence requirements for binding of Rep68 to the adeno-associated virus terminal repeats. J. Virol. 70:1542-1553. (Pubitemid 26062912)
-
(1996)
Journal of Virology
, vol.70
, Issue.3
, pp. 1542-1553
-
-
Ryan, J.H.1
Zolotukhin, S.2
Muzyczka, N.3
-
51
-
-
0026070440
-
Targeted integration of adeno-associated virus (AAV) into human chromosome 19
-
Samulski, R. J., X. Zhu, X. Xiao, J. D. Brook, D. E. Housman, N. Epstein, and L. A. Hunter. 1991. Targeted integration of adeno-associated virus (AAV) into human chromosome 19. EMBO J. 10:3941-3950.
-
(1991)
EMBO J.
, vol.10
, pp. 3941-3950
-
-
Samulski, R.J.1
Zhu, X.2
Xiao, X.3
Brook, J.D.4
Housman, D.E.5
Epstein, N.6
Hunter, L.A.7
-
52
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila, A. C., J. M. Calabrese, S. S. Levine, G. W. Yeo, P. B. Rahl, R. A. Flynn, R. A. Young, and P. A. Sharp. 2008. Divergent transcription from active promoters. Science 322:1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
53
-
-
0025943945
-
Transcriptional repression by YY1, a human GLI-Kruppel-related protein, and relief of repression by adenovirus E1A protein
-
Shi, Y., E. Seto, L. S. Chang, and T. Shenk. 1991. Transcriptional repression by YY1, a human GLI-Kruppel-related protein, and relief of repression by adenovirus E1A protein. Cell 67:377-388. (Pubitemid 121001453)
-
(1991)
Cell
, vol.67
, Issue.2
, pp. 377-388
-
-
Shi, Y.1
Seto, E.2
Chang, L.-S.3
Shenk, T.4
-
54
-
-
0032975071
-
Comparative characterization of Rep proteins from the helper-dependent adeno-associated virus type 2 and the autonomous goose parvovirus
-
Smith, D. H., P. Ward, and R. M. Linden. 1999. Comparative characterization of Rep proteins from the helper-dependent adeno-associated virus type 2 and the autonomous goose parvovirus. J. Virol. 73:2930-2937.
-
(1999)
J. Virol.
, vol.73
, pp. 2930-2937
-
-
Smith, D.H.1
Ward, P.2
Linden, R.M.3
-
55
-
-
0025176876
-
In vitro resolution of covalently joined AAV chromosome ends
-
Snyder, R. O., R. J. Samulski, and N. Muzyczka. 1990. In vitro resolution of covalently joined AAV chromosome ends. Cell 60:105-113.
-
(1990)
Cell
, vol.60
, pp. 105-113
-
-
Snyder, R.O.1
Samulski, R.J.2
Muzyczka, N.3
-
56
-
-
0020684648
-
Nucleotide sequence and organization of the adeno-associated virus 2 genome
-
Srivastava, A., E. W. Lusby, and K. I. Berns. 1983. Nucleotide sequence and organization of the adeno-associated virus 2 genome. J. Virol. 45:555-564. (Pubitemid 13225420)
-
(1983)
Journal of Virology
, vol.45
, Issue.2
, pp. 555-564
-
-
Srivastava, A.1
Lusby, E.W.2
Berns, K.I.3
-
57
-
-
0035877583
-
Phosphorylation of a novel myosin binding subunit of protein phosphatase 1 reveals a conserved mechanism in the regulation of actin cytoskeleton
-
Tan, I., C. H. Ng, L. Lim, and T. Leung. 2001. Phosphorylation of a novel myosin binding subunit of protein phosphatase 1 reveals a conserved mechanism in the regulation of actin cytoskeleton. J. Biol. Chem. 276:21209-21216.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 21209-21216
-
-
Tan, I.1
Ng, C.H.2
Lim, L.3
Leung, T.4
-
58
-
-
0347135948
-
An abundance of bidirectional promoters in the human genome
-
Trinklein, N. D., S. F. Aldred, S. J. Hartman, D. I. Schroeder, R. P. Otillar, and R. M. Myers. 2004. An abundance of bidirectional promoters in the human genome. Genome Res. 14:62-66.
-
(2004)
Genome Res.
, vol.14
, pp. 62-66
-
-
Trinklein, N.D.1
Aldred, S.F.2
Hartman, S.J.3
Schroeder, D.I.4
Otillar, R.P.5
Myers, R.M.6
-
59
-
-
0028916052
-
Asymmetric replication in vitro from a human sequence element is dependent on adeno-associated virus Rep protein
-
Urcelay, E., P. Ward, S. M. Wiener, B. Safer, and R. M. Kotin. 1995. Asymmetric replication in vitro from a human sequence element is dependent on adeno-associated virus Rep protein. J. Virol. 69:2038-2046.
-
(1995)
J. Virol.
, vol.69
, pp. 2038-2046
-
-
Urcelay, E.1
Ward, P.2
Wiener, S.M.3
Safer, B.4
Kotin, R.M.5
-
60
-
-
85145141273
-
Replication of adeno-associated virus DNA
-
J. R. Kerr, S. F. Cotmore, M. E. Bloom, R. M. Linden, and C. R. Parrish (ed.), Hodder Arnold, London, England
-
Ward, P. 2005. Replication of adeno-associated virus DNA, p. 189-211. In J. R. Kerr, S. F. Cotmore, M. E. Bloom, R. M. Linden, and C. R. Parrish (ed.), Parvoviruses. Hodder Arnold, London, England.
-
(2005)
Parvoviruses
, pp. 189-211
-
-
Ward, P.1
-
61
-
-
0034790801
-
Rep-dependent initiation of adeno-associated virus type 2 DNA replication by a herpes simplex virus type 1 replication complex in a reconstituted system
-
DOI 10.1128/JVI.75.21.10250-10258.2001
-
Ward, P., M. Falkenberg, P. Elias, M. Weitzman, and R. M. Linden. 2001. Rep-dependent initiation of adeno-associated virus type 2 DNA replication by a herpes simplex virus type 1 replication complex in a reconstituted system. J. Virol. 75:10250-10258. (Pubitemid 32948055)
-
(2001)
Journal of Virology
, vol.75
, Issue.21
, pp. 10250-10258
-
-
Ward, P.1
Falkenberg, M.2
Elias, P.3
Weitzman, M.4
Linden, R.M.5
-
62
-
-
0028307303
-
Adeno-associated virus (AAV) Rep proteins mediate complex formation between AAV DNA and its integration site in human DNA
-
Weitzman, M. D., S. R. Kyostio, R. M. Kotin, and R. A. Owens. 1994. Adeno-associated virus (AAV) Rep proteins mediate complex formation between AAV DNA and its integration site in human DNA. Proc. Natl. Acad. Sci. USA 91:5808-5812.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5808-5812
-
-
Weitzman, M.D.1
Kyostio, S.R.2
Kotin, R.M.3
Owens, R.A.4
-
63
-
-
0029008578
-
A maltose-binding protein/adeno-associated virus Rep68 fusion protein has DNA-RNA helicase and ATPase activities
-
Wonderling, R. S., S. R. Kyostio, and R. A. Owens. 1995. A maltose-binding protein/adeno-associated virus Rep68 fusion protein has DNA-RNA helicase and ATPase activities. J. Virol. 69:3542-3548.
-
(1995)
J. Virol.
, vol.69
, pp. 3542-3548
-
-
Wonderling, R.S.1
Kyostio, S.R.2
Owens, R.A.3
-
64
-
-
0031041176
-
Binding sites for adeno-associated virus Rep proteins within the human genome
-
Wonderling, R. S., and R. A. Owens. 1997. Binding sites for adeno-associated virus Rep proteins within the human genome. J. Virol. 71:2528-2534. (Pubitemid 27078641)
-
(1997)
Journal of Virology
, vol.71
, Issue.3
, pp. 2528-2534
-
-
Wonderling, R.S.1
Owens, R.A.2
-
65
-
-
0029888092
-
The Rep68 protein of adeno-associated virus type 2 stimulates expression of the platelet-derived growth factor B c-sis proto-oncogene
-
Wonderling, R. S., and R. A. Owens. 1996. The Rep68 protein of adeno-associated virus type 2 stimulates expression of the platelet-derived growth factor B c-sis proto-oncogene. J. Virol. 70:4783-4786.
-
(1996)
J. Virol.
, vol.70
, pp. 4783-4786
-
-
Wonderling, R.S.1
Owens, R.A.2
-
66
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
Yelin, R., D. Dahary, R. Sorek, E. Y. Levanon, O. Goldstein, A. Shoshan, A. Diber, S. Biton, Y. Tamir, R. Khosravi, S. Nemzer, E. Pinner, S. Walach, J. Bernstein, K. Savitsky, and G. Rotman. 2003. Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol. 21:379-386.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
Levanon, E.Y.4
Goldstein, O.5
Shoshan, A.6
Diber, A.7
Biton, S.8
Tamir, Y.9
Khosravi, R.10
Nemzer, S.11
Pinner, E.12
Walach, S.13
Bernstein, J.14
Savitsky, K.15
Rotman, G.16
-
67
-
-
0038475876
-
Identification of active site residues of the adeno-associated virus type 2 Rep endonuclease
-
Yoon-Robarts, M., and R. M. Linden. 2003. Identification of active site residues of the adeno-associated virus type 2 Rep endonuclease. J. Biol. Chem. 278:4912-4918.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 4912-4918
-
-
Yoon-Robarts, M.1
Linden, R.M.2
-
68
-
-
0342313708
-
Roles of adeno-associated virus Rep protein and human chromosome 19 in site-specific recombination
-
Young, S. M., Jr., D. M. McCarty, N. Degtyareva, and R. J. Samulski. 2000. Roles of adeno-associated virus Rep protein and human chromosome 19 in site-specific recombination. J. Virol. 74:3953-3966.
-
(2000)
J. Virol.
, vol.74
, pp. 3953-3966
-
-
Young Jr., S.M.1
McCarty, D.M.2
Degtyareva, N.3
Samulski, R.J.4
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