메뉴 건너뛰기




Volumn 78, Issue 5, 2009, Pages 312-320

Spatial and temporal expression of dADAR mRNA and protein isoforms during embryogenesis in Drosophila melanogaster

Author keywords

5 UTR intron retention; Alternative splicing regulation; dADAR mRNA isoforms; dADAR protein isoforms; DIG in situ hybridization

Indexed keywords

ADENOSINE DEAMINASE ACTING ON RNA; HYDROLASE; MESSENGER RNA; MESSENGER RNA PRECURSOR; UNCLASSIFIED DRUG;

EID: 70449524414     PISSN: 03014681     EISSN: 14320436     Source Type: Journal    
DOI: 10.1016/j.diff.2009.08.003     Document Type: Article
Times cited : (5)

References (30)
  • 2
    • 34250624128 scopus 로고    scopus 로고
    • How does RNA editing affect dsRNA-mediated gene silencing?
    • Bass B.L. How does RNA editing affect dsRNA-mediated gene silencing?. Cold Spring Harbor Symp. Quant. Biol. 71 (2006) 285-292
    • (2006) Cold Spring Harbor Symp. Quant. Biol. , vol.71 , pp. 285-292
    • Bass, B.L.1
  • 5
    • 34547681984 scopus 로고    scopus 로고
    • Alternative splicing of an rnp-4f mRNA isoform retaining an evolutionarily-conserved 5′-UTR intronic element is developmentally regulated and shown via RNAi to be essential for normal central nervous system development in Drosophila melanogaster
    • Chen J., Concel V.J., Bhatla S., Rajeshwaran R., Smith D.L.H., Varadarajan M., Backscheider K.L., Bockrath R.A., Petschek J.P., and Vaughn J.C. Alternative splicing of an rnp-4f mRNA isoform retaining an evolutionarily-conserved 5′-UTR intronic element is developmentally regulated and shown via RNAi to be essential for normal central nervous system development in Drosophila melanogaster. Gene 399 (2007) 91-104
    • (2007) Gene , vol.399 , pp. 91-104
    • Chen, J.1    Concel, V.J.2    Bhatla, S.3    Rajeshwaran, R.4    Smith, D.L.H.5    Varadarajan, M.6    Backscheider, K.L.7    Bockrath, R.A.8    Petschek, J.P.9    Vaughn, J.C.10
  • 6
    • 33645771770 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing in Drosophila spliceosomal assembly factor RNP-4F during development
    • Fetherson R.A., Strock S.B., White K.N., and Vaughn J.C. Alternative pre-mRNA splicing in Drosophila spliceosomal assembly factor RNP-4F during development. Gene 371 (2006) 234-245
    • (2006) Gene , vol.371 , pp. 234-245
    • Fetherson, R.A.1    Strock, S.B.2    White, K.N.3    Vaughn, J.C.4
  • 7
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi S.P., Rochon Y., Franza B.R., and Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19 (1999) 1720-1730
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 9
    • 0027772363 scopus 로고
    • RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency
    • Higuchi M., Single F.N., Kohler M., Sommer B., Sprengel R., and Seeburg P.H. RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell 75 (1993) 1361-1370
    • (1993) Cell , vol.75 , pp. 1361-1370
    • Higuchi, M.1    Single, F.N.2    Kohler, M.3    Sommer, B.4    Sprengel, R.5    Seeburg, P.H.6
  • 10
    • 0042528670 scopus 로고    scopus 로고
    • Nervous system targets of RNA editing identified by comparative genomics
    • Hoopengardner B., Bhalla T., Staber C., and Reenan R. Nervous system targets of RNA editing identified by comparative genomics. Science 301 (2003) 832-836
    • (2003) Science , vol.301 , pp. 832-836
    • Hoopengardner, B.1    Bhalla, T.2    Staber, C.3    Reenan, R.4
  • 11
    • 49649095216 scopus 로고    scopus 로고
    • RNA editing in regulating gene expression in the brain
    • Jepson J.E.C., and Reenan R.A. RNA editing in regulating gene expression in the brain. Biochim. Biophys. Acta 1779 (2008) 459-470
    • (2008) Biochim. Biophys. Acta , vol.1779 , pp. 459-470
    • Jepson, J.E.C.1    Reenan, R.A.2
  • 13
    • 10744223020 scopus 로고    scopus 로고
    • Adenosine deaminases acting on RNA (ADARs): RNA-editing enzymes
    • Keegan L.P., Leroy A., Sproul D., and O'Connell M.A. Adenosine deaminases acting on RNA (ADARs): RNA-editing enzymes. Genome Biol. 5 (2004) 209
    • (2004) Genome Biol. , vol.5 , pp. 209
    • Keegan, L.P.1    Leroy, A.2    Sproul, D.3    O'Connell, M.A.4
  • 14
    • 0030972389 scopus 로고    scopus 로고
    • Nuclear antisense RNA induces extensive adenosine modifications and nuclear retention of target transcripts
    • Kumar M., and Carmichael G.G. Nuclear antisense RNA induces extensive adenosine modifications and nuclear retention of target transcripts. Proc. Natl. Acad. Sci. 94 (1997) 3542-3547
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 3542-3547
    • Kumar, M.1    Carmichael, G.G.2
  • 16
    • 0037097413 scopus 로고    scopus 로고
    • Developmental expression and enzymatic activity of pre-mRNA deaminase in Drosophila melanogaster
    • Ma E., Tucker M.C., Chen Q., and Haddad G.G. Developmental expression and enzymatic activity of pre-mRNA deaminase in Drosophila melanogaster. Mol. Brain Res. 102 (2002) 100-104
    • (2002) Mol. Brain Res. , vol.102 , pp. 100-104
    • Ma, E.1    Tucker, M.C.2    Chen, Q.3    Haddad, G.G.4
  • 18
    • 0021760534 scopus 로고
    • Sequence, structure, and codon preference of the Drosophila ribosomal protein 49 gene
    • O'Connell P., and Rosbash M. Sequence, structure, and codon preference of the Drosophila ribosomal protein 49 gene. Nucleic Acids Res. 12 (1984) 5495-5513
    • (1984) Nucleic Acids Res. , vol.12 , pp. 5495-5513
    • O'Connell, P.1    Rosbash, M.2
  • 19
    • 0033943052 scopus 로고    scopus 로고
    • dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing
    • Palladino M.J., Keegan L.P., O'Connell M.A., and Reenan R.A. dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing. RNA 6 (2000) 1004-1018
    • (2000) RNA , vol.6 , pp. 1004-1018
    • Palladino, M.J.1    Keegan, L.P.2    O'Connell, M.A.3    Reenan, R.A.4
  • 20
    • 0038813723 scopus 로고    scopus 로고
    • RNA editing and regulation of Drosophila 4f-rnp expression by sas10 antisense readthrough mRNA transcripts
    • Peters N.T., Rohrbach J.A., Zalewski B.A., Byrkett C.M., and Vaughn J.C. RNA editing and regulation of Drosophila 4f-rnp expression by sas10 antisense readthrough mRNA transcripts. RNA 9 (2003) 698-710
    • (2003) RNA , vol.9 , pp. 698-710
    • Peters, N.T.1    Rohrbach, J.A.2    Zalewski, B.A.3    Byrkett, C.M.4    Vaughn, J.C.5
  • 21
    • 0030604716 scopus 로고    scopus 로고
    • RNA editing in Drosophila 4f-rnp gene nuclear transcripts by multiple A-to-G conversions
    • Petschek J.P., Mermer M.J., Scheckelhoff M.R., Simone A.A., and Vaughn J.C. RNA editing in Drosophila 4f-rnp gene nuclear transcripts by multiple A-to-G conversions. J. Mol. Biol. 259 (1996) 885-890
    • (1996) J. Mol. Biol. , vol.259 , pp. 885-890
    • Petschek, J.P.1    Mermer, M.J.2    Scheckelhoff, M.R.3    Simone, A.A.4    Vaughn, J.C.5
  • 22
    • 0031578712 scopus 로고    scopus 로고
    • RNA editing and alternative splicing generate mRNA transcript diversity from the Drosophila 4f-rnp locus
    • Petschek J.P., Scheckelhoff M.R., Mermer M.J., and Vaughn J.C. RNA editing and alternative splicing generate mRNA transcript diversity from the Drosophila 4f-rnp locus. Gene 204 (1997) 267-276
    • (1997) Gene , vol.204 , pp. 267-276
    • Petschek, J.P.1    Scheckelhoff, M.R.2    Mermer, M.J.3    Vaughn, J.C.4
  • 23
    • 0036849242 scopus 로고    scopus 로고
    • A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation
    • Rader S.D., and Guthrie C. A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation. RNA 8 (2002) 1378-1392
    • (2002) RNA , vol.8 , pp. 1378-1392
    • Rader, S.D.1    Guthrie, C.2
  • 25
    • 0000799972 scopus 로고    scopus 로고
    • Fluorescent analysis of Drosophila embryos
    • Sullivan W., Ashburner M., and Hawley R.S. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Rothwell W.F., and Sullivan W. Fluorescent analysis of Drosophila embryos. In: Sullivan W., Ashburner M., and Hawley R.S. (Eds). Drosophila Protocols (2000), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 141-157
    • (2000) Drosophila Protocols , pp. 141-157
    • Rothwell, W.F.1    Sullivan, W.2
  • 26
    • 0033529064 scopus 로고    scopus 로고
    • Regulation of alternative splicing by RNA editing
    • Rueter S.M., Dawson T.R., and Emeson R.B. Regulation of alternative splicing by RNA editing. Nature 399 (1999) 75-80
    • (1999) Nature , vol.399 , pp. 75-80
    • Rueter, S.M.1    Dawson, T.R.2    Emeson, R.B.3
  • 27
    • 0036703330 scopus 로고    scopus 로고
    • RNA editing by adenosine deaminases generates RNA and protein diversity
    • Schaub M., and Keller W. RNA editing by adenosine deaminases generates RNA and protein diversity. Biochimie 84 (2002) 791-803
    • (2002) Biochimie , vol.84 , pp. 791-803
    • Schaub, M.1    Keller, W.2
  • 28
    • 23944466443 scopus 로고    scopus 로고
    • ADAR gene family and A-to-I RNA editing: diverse roles in posttranscriptional gene regulation
    • Valente L., and Nishikura K. ADAR gene family and A-to-I RNA editing: diverse roles in posttranscriptional gene regulation. Prog. Nucleic Acid Res. Mol. Biol. 79 (2005) 299-338
    • (2005) Prog. Nucleic Acid Res. Mol. Biol. , vol.79 , pp. 299-338
    • Valente, L.1    Nishikura, K.2
  • 29
    • 0002576958 scopus 로고    scopus 로고
    • Histological techniques for the Drosophila eye. Part I: larva and pupa
    • Sullivan W., Ashburner M., and Hawley R.S. (Eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Wolff T. Histological techniques for the Drosophila eye. Part I: larva and pupa. In: Sullivan W., Ashburner M., and Hawley R.S. (Eds). Drosophila Protocols (2000), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 201-227
    • (2000) Drosophila Protocols , pp. 201-227
    • Wolff, T.1
  • 30
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.