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Volumn 312, Issue 8, 2009, Pages 841-854

Association of orthodenticle with natural variation for early embryonic patterning in Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

DROSOPHILA PROTEIN; HOMEODOMAIN PROTEIN; ORTHODENTICLE PROTEIN, DROSOPHILA; PRIMER DNA;

EID: 70449130649     PISSN: 15525007     EISSN: 15525015     Source Type: Journal    
DOI: 10.1002/jez.b.21299     Document Type: Article
Times cited : (8)

References (56)
  • 1
    • 27144491328 scopus 로고    scopus 로고
    • Adaptive evolution of non-coding DNA in Drosophila
    • Andolfatto P. 2005. Adaptive evolution of non-coding DNA in Drosophila. Nature 437:1149-1152.
    • (2005) Nature , vol.437 , pp. 1149-1152
    • Andolfatto, P.1
  • 2
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun DJ, Aquadro CF. 1992. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356:519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 3
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh YP, et al. 2007. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol 5:e310.
    • (2007) PLoS Biol , vol.e310 , pp. 5
    • Begun, D.J.1    Holloway, A.K.2    Stevens, K.3    Hillier, L.W.4    Poh, Y.P.5
  • 4
    • 0034625265 scopus 로고    scopus 로고
    • Endless forms: The evolution of gene regulation and morphological diversity
    • Carroll SB. 2000. Endless forms: the evolution of gene regulation and morphological diversity. Cell 101:577-580.
    • (2000) Cell , vol.101 , pp. 577-580
    • Carroll, S.B.1
  • 5
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657-1659.
    • (2000) Mol Ecol , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 6
    • 34250658361 scopus 로고    scopus 로고
    • Evolutionary conservation and divergence of the segmentation process in arthropods
    • Damen WG. 2007. Evolutionary conservation and divergence of the segmentation process in arthropods. Dev Dyn 236:1379-1391.
    • (2007) Dev Dyn , vol.236 , pp. 1379-1391
    • Damen, W.G.1
  • 7
    • 0023679744 scopus 로고
    • The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner
    • Driever W, Nüsslein-Volhard C. 1988a. The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner. Cell 54:95-104.
    • (1988) Cell , vol.54 , pp. 95-104
    • Driever, W.1    Nüsslein-Volhard, C.2
  • 8
    • 0023677769 scopus 로고
    • A gradient of bicoid protein in Drosophila embryos
    • Driever W, Nüsslein-Volhard C. 1988b. A gradient of bicoid protein in Drosophila embryos. Cell 54:83-93.
    • (1988) Cell , vol.54 , pp. 83-93
    • Driever, W.1    Nüsslein-Volhard, C.2
  • 9
    • 0024323615 scopus 로고
    • Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen
    • Driever W, Thoma G, Nüsslein-Volhard C. 1989. Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen. Nature 340:363-367.
    • (1989) Nature , vol.340 , pp. 363-367
    • Driever, W.1    Thoma, G.2    Nüsslein-Volhard, C.3
  • 10
    • 0842303319 scopus 로고    scopus 로고
    • Seeing is believing: The bicoid morphogen gradient matures
    • Ephrussi A, St Johnston D. 2004. Seeing is believing: the bicoid morphogen gradient matures. Cell 116:143-152.
    • (2004) Cell , vol.116 , pp. 143-152
    • Ephrussi, A.1    St Johnston, D.2
  • 11
    • 0025108424 scopus 로고
    • The orthodenticle gene encodes a novel homeo domain protein involved in the development of the Drosophila nervous system and ocellar visual structures
    • Finkelstein R, Smouse D, Capaci TM, Spradling AC, Perrimon N. 1990. The orthodenticle gene encodes a novel homeo domain protein involved in the development of the Drosophila nervous system and ocellar visual structures. Genes Dev 4:1516-1527.
    • (1990) Genes Dev , vol.4 , pp. 1516-1527
    • Finkelstein, R.1    Smouse, D.2    Capaci, T.M.3    Spradling, A.C.4    Perrimon, N.5
  • 12
    • 41949085885 scopus 로고    scopus 로고
    • A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm
    • Fowlkes CC, Hendriks CL, Keranen SV, Weber GH, Rubel O, et al. 2008. A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm. Cell 133:364-374.
    • (2008) Cell , vol.133 , pp. 364-374
    • Fowlkes, C.C.1    Hendriks, C.L.2    Keranen, S.V.3    Weber, G.H.4    Rubel, O.5
  • 13
    • 0033037862 scopus 로고    scopus 로고
    • Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients
    • Fujioka M, Emi-Sarker Y, Yusibova GL, Goto T, Jaynes JB. 1999. Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients. Development 126:2527-2538.
    • (1999) Development , vol.126 , pp. 2527-2538
    • Fujioka, M.1    Emi-Sarker, Y.2    Yusibova, G.L.3    Goto, T.4    Jaynes, J.B.5
  • 14
    • 0031793177 scopus 로고    scopus 로고
    • Targeting gene expression to the head: The Drosophila orthodenticle gene is a direct target of the Bicoid morphogen
    • Gao Q, Finkelstein R. 1998. Targeting gene expression to the head: the Drosophila orthodenticle gene is a direct target of the Bicoid morphogen. Development 125:4185-4193.
    • (1998) Development , vol.125 , pp. 4185-4193
    • Gao, Q.1    Finkelstein, R.2
  • 15
    • 13444304173 scopus 로고    scopus 로고
    • Chance caught on the wing: Cis-regulatory evolution and the origin of pigment patterns in Drosophila
    • Gompel N, Prud'homme B, Wittkopp PJ, Kassner VA, Carroll SB. 2005. Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433:481-487.
    • (2005) Nature , vol.433 , pp. 481-487
    • Gompel, N.1    Prud'homme, B.2    Wittkopp, P.J.3    Kassner, V.A.4    Carroll, S.B.5
  • 16
    • 13244268372 scopus 로고    scopus 로고
    • Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: Binary feature versus invariant moment digital representations
    • Gurunathan R, Van Emden B, Panchanathan S, Kumar S. 2004. Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations. BMC Bioinformatics 5:202.
    • (2004) BMC Bioinformatics , vol.5 , pp. 202
    • Gurunathan, R.1    van Emden, B.2    Panchanathan, S.3    Kumar, S.4
  • 17
    • 22344444998 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
    • Haddrill PRTK, Charlesworth B, Andolfatto P. 2005. Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations. Genome Res 16:790-799.
    • (2005) Genome Res , vol.16 , pp. 790-799
    • Haddrill, P.R.T.K.1    Charlesworth, B.2    Andolfatto, P.3
  • 18
    • 3142699887 scopus 로고    scopus 로고
    • Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans
    • Hahn MW, Rockman MV, Soranzo N, Goldstein DB, Wray GA. 2004. Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans. Genetics 167:867-877.
    • (2004) Genetics , vol.167 , pp. 867-877
    • Hahn, M.W.1    Rockman, M.V.2    Soranzo, N.3    Goldstein, D.B.4    Wray, G.A.5
  • 20
    • 0025353654 scopus 로고
    • Cis-acting control elements for Krüppel expression in the Drosophila embryo
    • Hoch M, Schroder C, Seifert E, Jäckle H. 1990. cis-acting control elements for Krüppel expression in the Drosophila embryo. EMBO J 9:2587-2595.
    • (1990) EMBO J , vol.9 , pp. 2587-2595
    • Hoch, M.1    Schroder, C.2    Seifert, E.3    Jäckle, H.4
  • 21
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • Hoekstra HE, Coyne JA. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution Int J Org Evolution 61:995-1016.
    • (2007) Evolution Int J Org Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 22
    • 0037075022 scopus 로고    scopus 로고
    • Establishment of developmental precision and proportions in the early Drosophila embryo
    • Houchmandzadeh B, Wieschaus E, Leibler S. 2002. Establishment of developmental precision and proportions in the early Drosophila embryo. Nature 415:798-802.
    • (2002) Nature , vol.415 , pp. 798-802
    • Houchmandzadeh, B.1    Wieschaus, E.2    Leibler, S.3
  • 23
    • 0025688974 scopus 로고
    • Decoding positional information: Regulation of the pair-rule gene hairy
    • Howard KR, Struhl G. 1990. Decoding positional information: regulation of the pair-rule gene hairy. Development 110: 1223-1231.
    • (1990) Development , vol.110 , pp. 1223-1231
    • Howard, K.R.1    Struhl, G.2
  • 24
    • 35048822011 scopus 로고    scopus 로고
    • Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosome-wide single nucleotide polymorphism data
    • Hutter SLH, Beisswanger S, De Lorenzo D, Stephan W. 2007. Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosome-wide single nucleotide polymorphism data. Genetics 177:469-480.
    • (2007) Genetics , vol.177 , pp. 469-480
    • Hutter, S.L.H.1    Beisswanger, S.2    de Lorenzo, D.3    Stephan, W.4
  • 25
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob F, Monod J. 1961. Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol 3:318-356.
    • (1961) J Mol Biol , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 26
    • 39749184167 scopus 로고    scopus 로고
    • The evolution of gene regulation underlies a morphological difference between two Drosophila sister species
    • Jeong S, Rebeiz M, Andolfatto P, Werner T, True J, et al. 2008. The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. Cell 132:783-793.
    • (2008) Cell , vol.132 , pp. 783-793
    • Jeong, S.1    Rebeiz, M.2    Andolfatto, P.3    Werner, T.4    True, J.5
  • 27
    • 0034602678 scopus 로고    scopus 로고
    • Molecular heterochrony in the early development of Drosophila
    • Kim J, Kerr JQ, Min GS. 2000. Molecular heterochrony in the early development of Drosophila. Proc Natl Acad Sci USA 97:212-216.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 212-216
    • Kim, J.1    Kerr, J.Q.2    Min, G.S.3
  • 29
    • 12244265472 scopus 로고    scopus 로고
    • BEST: A novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development
    • Kumar S, Jayaraman K, Panchanathan S, Gurunathan R, Marti-Subirana A, et al. 2002. BEST: a novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development. Genetics 162:2037-2047.
    • (2002) Genetics , vol.162 , pp. 2037-2047
    • Kumar, S.1    Jayaraman, K.2    Panchanathan, S.3    Gurunathan, R.4    Marti-Subirana, A.5
  • 30
    • 0343247787 scopus 로고    scopus 로고
    • Mechanism and Bicoid-dependent control of hairy stripe 7 expression in the posterior region of the Drosophila embryo
    • La Rosee A, Hader T, Taubert H, Rivera-Pomar R, Jäckle H. 1997. Mechanism and Bicoid-dependent control of hairy stripe 7 expression in the posterior region of the Drosophila embryo. EMBO J 16:4403-4411.
    • (1997) EMBO J , vol.16 , pp. 4403-4411
    • la Rosee, A.1    Hader, T.2    Taubert, H.3    Rivera-Pomar, R.4    Jäckle, H.5
  • 33
    • 0028826670 scopus 로고
    • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila
    • Ludwig MZ, Kreitman M. 1995. Evolutionary dynamics of the enhancer region of even-skipped in Drosophila. Mol Biol Evol 12:1002-1011.
    • (1995) Mol Biol Evol , vol.12 , pp. 1002-1011
    • Ludwig, M.Z.1    Kreitman, M.2
  • 35
    • 32544442896 scopus 로고    scopus 로고
    • Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia
    • Lynch JA, Brent AE, Leaf DS, Pultz MA, Desplan C. 2006 Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia. Nature 439:728-732.
    • (2006) Nature , vol.439 , pp. 728-732
    • Lynch, J.A.1    Brent, A.E.2    Leaf, D.S.3    Pultz, M.A.4    Desplan, C.5
  • 36
    • 17044431033 scopus 로고    scopus 로고
    • The role of binding site cluster strength in Bicoiddependent patterning in Drosophila
    • Manu, Surkova S, Spirov AV, Gursky V, Janssens H, et al. 2009. The role of binding site cluster strength in Bicoiddependent patterning in Drosophila. Proc Natl Acad Sci USA 102:4960-4965.
    • (2009) Proc Natl Acad Sci USA , vol.102 , pp. 4960-4965
    • Manu Surkova, S.1    Spirov, A.V.2    Gursky, V.3    Janssens, H.4
  • 37
    • 0030034357 scopus 로고    scopus 로고
    • Intraspecific nuclear DNA variation in Drosophila
    • Moriyama EN, Powell JR. 1996. Intraspecific nuclear DNA variation in Drosophila. Mol Biol Evol 13:261-277.
    • (1996) Mol Biol Evol , vol.13 , pp. 261-277
    • Moriyama, E.N.1    Powell, J.R.2
  • 38
    • 17044431033 scopus 로고    scopus 로고
    • The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila
    • Ochoa-Espinosa A, Yucel G, Kaplan L, Pare A, Pura N, et al. 2005. The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila. Proc Natl Acad Sci USA 102:4960-4965.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4960-4965
    • Ochoa-Espinosa, A.1    Yucel, G.2    Kaplan, L.3    Pare, A.4    Pura, N.5
  • 39
    • 28844499831 scopus 로고    scopus 로고
    • Arthropod segmentation: Beyond the Drosophila paradigm
    • Peel AD, Chipman AD, Akam M. 2005. Arthropod segmentation: beyond the Drosophila paradigm. Nat Rev Genet 6:905-916.
    • (2005) Nat Rev Genet , vol.6 , pp. 905-916
    • Peel, A.D.1    Chipman, A.D.2    Akam, M.3
  • 40
    • 33845971545 scopus 로고    scopus 로고
    • Soft sweeps III: The signature of positive selection from recurrent mutation
    • Pennings PS, Hermisson J. 2006a. Soft sweeps III: the signature of positive selection from recurrent mutation. PLoS Genet 2:e186.
    • (2006) PLoS Genet , vol.e186 , pp. 2
    • Pennings, P.S.1    Hermisson, J.2
  • 41
    • 33646592536 scopus 로고    scopus 로고
    • Soft sweeps II: Molecular population genetics of adaptation from recurrent mutation or migration
    • Pennings PS, Hermisson J. 2006b. Soft sweeps II: molecular population genetics of adaptation from recurrent mutation or migration. Mol Biol Evol 23:1076-1084.
    • (2006) Mol Biol Evol , vol.23 , pp. 1076-1084
    • Pennings, P.S.1    Hermisson, J.2
  • 42
    • 0029015420 scopus 로고
    • Activation of posterior gap gene expression in the Drosophila blastoderm
    • Rivera-Pomar R, Lu X, Perrimon N, Taubert H, Jäckle H. 1995. Activation of posterior gap gene expression in the Drosophila blastoderm. Nature 376:253-256.
    • (1995) Nature , vol.376 , pp. 253-256
    • Rivera-Pomar, R.1    Lu, X.2    Perrimon, N.3    Taubert, H.4    Jäckle, H.5
  • 43
    • 0345526412 scopus 로고    scopus 로고
    • Positive selection on a human-specific transcription factor binding site regulating IL4 expression
    • Rockman MV, Hahn MW, Soranzo N, Goldstein DB, Wray GA. 2003. Positive selection on a human-specific transcription factor binding site regulating IL4 expression. Curr Biol 13:2118-2123.
    • (2003) Curr Biol , vol.13 , pp. 2118-2123
    • Rockman, M.V.1    Hahn, M.W.2    Soranzo, N.3    Goldstein, D.B.4    Wray, G.A.5
  • 44
  • 45
    • 29144492108 scopus 로고    scopus 로고
    • Ancient and recent positive selection transformed opioid cis-regulation in humans
    • Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, et al. 2005. Ancient and recent positive selection transformed opioid cis-regulation in humans. PLoS Biol 3:e387.
    • (2005) PLoS Biol , vol.e387 , pp. 3
    • Rockman, M.V.1    Hahn, M.W.2    Soranzo, N.3    Zimprich, F.4    Goldstein, D.B.5
  • 46
  • 47
    • 0242584375 scopus 로고    scopus 로고
    • The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium
    • Schroder R. 2003. The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium. Nature 422:621-625.
    • (2003) Nature , vol.422 , pp. 621-625
    • Schroder, R.1
  • 48
    • 25144452814 scopus 로고    scopus 로고
    • Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome
    • Singh ND, Davis JC, Petrov DA. 2005. Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. J Mol Evol 61: 315-324.
    • (2005) J Mol Evol , vol.61 , pp. 315-324
    • Singh, N.D.1    Davis, J.C.2    Petrov, D.A.3
  • 49
    • 0026744792 scopus 로고
    • Regulation of evenskipped stripe 2 in the Drosophila embryo
    • Small S, Blair A, Levine M. 1992. Regulation of evenskipped stripe 2 in the Drosophila embryo. EMBO J 11: 4047-4057.
    • (1992) EMBO J , vol.11 , pp. 4047-4057
    • Small, S.1    Blair, A.2    Levine, M.3
  • 50
    • 64549083692 scopus 로고    scopus 로고
    • Formation of the bicoid morphogen gradient: An mRNA gradient dictates the protein gradient
    • Spirov A, Fahmy K, Schneider M, Frei E, Noll M, Baumgartner S. 2009. Formation of the bicoid morphogen gradient: an mRNA gradient dictates the protein gradient. Development 136:605-614.
    • (2009) Development , vol.136 , pp. 605-614
    • Spirov, A.1    Fahmy, K.2    Schneider, M.3    Frei, E.4    Noll, M.5    Baumgartner, S.6
  • 51
    • 0034735767 scopus 로고    scopus 로고
    • Evolutionary biology. The problem of variation
    • Stern DL. 2000. Evolutionary biology. The problem of variation. Nature 408:529-531.
    • (2000) Nature , vol.408 , pp. 529-531
    • Stern, D.L.1
  • 52
    • 0038517876 scopus 로고    scopus 로고
    • Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism
    • Sucena E, Delon I, Jones I, Payre F, Stern DL. 2003. Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism. Nature 424:935-938.
    • (2003) Nature , vol.424 , pp. 935-938
    • Sucena, E.1    Delon, I.2    Jones, I.3    Payre, F.4    Stern, D.L.5
  • 53
    • 0024319520 scopus 로고
    • A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback
    • Tautz D, Pfeifle C. 1989. A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma 98:81-85.
    • (1989) Chromosoma , vol.98 , pp. 81-85
    • Tautz, D.1    Pfeifle, C.2
  • 55
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 56
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray GA. 2007. The evolutionary significance of cis-regulatory mutations. Nat Rev Genet 8:206-216.
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1


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