The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 14, 2005, Pages 4960-4965

  Ochoa Espinosa, Amanda ^a   Yucel, Gozde ^a   Kaplan, Leah ^a   Pare, Adam ^a   Pura, Noel ^a   Oberstein, Adam ^a,b   Papatsenko, Dmitri ^a,c   Small, Stephen ^a  

^a NEW YORK UNIVERSITY   (United States)

^b PRINCETON UNIVERSITY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Morphogen; Network; Transcription

Indexed keywords

BICOID; MORPHOGEN; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; COMBINATORIAL LIBRARY; DROSOPHILA; EMBRYO; EMBRYO PATTERN FORMATION; GENE CLUSTER; GENE EXPRESSION; GENE TARGETING; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL;

ANIMALS; BASE SEQUENCE; BINDING SITES; BODY PATTERNING; DNA; DROSOPHILA; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, INSECT; GENETIC COMPLEMENTATION TEST; HOMEODOMAIN PROTEINS; MULTIGENE FAMILY; TRANS-ACTIVATORS;

EID: 17044431033     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0500373102     Document Type: Article

References (50)

1. Berleth, T., Burri, M., Thoma, G., Bopp, D., Richstein, S., Frigerio, G., Noll, M. & Nusslein-Volhard, C. (1988) EMBO J. 7, 1749-1756.
2. Driever, W. & Nusslein-Volhard, C. (1988) Cell 54, 83-93.
3. Driever, W. & Nusslein-Volhard, C. (1988) Cell 54, 95-104.
4. Ephrussi, A. & St Johnston, D. (2004) Cell 116, 143-152.
5. Driever, W. (1993) in The Development of Drosophila melanogaster, eds. Bate, M. & Martinez-Arias, A. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 301-324.
6. Driever, W., Thoma, G. & Nusslein-Volhard, C. (1989) Nature 340, 363-367.
7. Tautz, D., Lehmann, R., Schnurch, H., Schuh, R., Seifert, E., Kienlin, A., Jones, K. & Jackle, H. (1987) Nature 327, 383-389.
8. Driever, W. & Nusslein-Volhard, C. (1989) Nature 337, 138-143.
9. Struhl, G., Struhl, K. & Macdonald, P. M. (1989) Cell 57, 1259-1273.
10. Finkelstein, R. & Perrimon, N. (1990) Nature 346, 485-488.
11. Gao, Q. & Finkelstein, R. (1998) Development (Cambridge, U.K.) 125, 4185-4193.
12. Houchmandzadeh, B., Wieschaus, E. & Leibler, S. (2002) Nature 415, 798-802.
13. Simpson-Brose, M., Treisman, J. & Desplan, C. (1994) Cell 78, 855-865.
14. Small, S., Blair, A. & Levine, M. (1992) EMBO J. 11, 4047-4057.
15. Andrioli, L. P., Oberstein, A. L., Corado, M. S., Yu, D. & Small, S. (2004) Dev. Biol. 276, 541-551.
16. Grossniklaus, U., Cadigan, K. M. & Gehring, W. J. (1994) Development (Cambridge, U.K.) 120, 3155-3171.
17. Lifanov, A. P., Makeev, V. J., Nazina, A. G. & Papalsenko, D. A. (2003) Genome Res. 13, 579-588.
18. Couronne, O., Poliakov, A., Bray, N., Ishkhanov, T., Ryaboy, D., Rubin, E., Pachter, L. & Dubchak, I. (2003) Genome Res. 13, 73-80.
19. Lawrence, P. A., Johnston, P., Macdonald, P. & Struhl, G. (1987) Nature 328, 440-442.
20. Rubin, G. M. & Spradling, A. C. (1982) Science 218, 348-353.
21. Small, S. (2000) Methods Enzymol. 326, 146-159.
22. Papatsenko, D. A., Makeev, V. J., Lifanov, A. P., Regnier, M., Nazina, A. G. & Desplan, C. (2002) Genome Res. 12, 470-481.
23. Papatsenko, D. & Levine, M. (2005) Proc. Natl. Acad. Sci. USA 102, 4966-4971.
24. Mohler, J., Eldon, E. D. & Pirrotta, V. (1989) EMBO J. 8, 1539-1548.
25. Pignoni, F., Baldarelli, R. M., Steingrinisson, E., Diaz, R. J., Patapoutian, A., Merriam, J. R. & Lengyel, J. A. (1990) Cell 62, 151-163.
26. Ingham, P., Howard, K. & Ish-Horowicz, D. (1985) Nature 318, 443-445.
27. Kilcher, F., Baumgartner, S., Bopp, D., Frei, E. & Noll, M. (1986) Nature 321, 493-499.
28. Grossniklaus, U., Pearson, R. K. & Gehring, W. J. (1992) Genes Dev. 6, 1030-1051.
29. Lee, H. H. & Frasch, M. (2004) Dev. Dyn. 229, 357-366.
30. Nambu, P. A. & Nambu, J. R. (1996) Development (Cambridge, U.K.) 122, 3467-3475.
31. Russell, S. R., Sanchez-Soriano, N., Wright, C. R. & Ashburner, M. (1996) Development (Cambridge, U.K.) 122, 3669-3676.
32. Wang, L. & Coulter, D. E. (1996) EMBO J. 15, 3182-3196.
33. Lagos-Quintana, M., Rauhut, R., Lendeckel, W. & Tuschl, T. (2001) Science 294, 853-858.
34. Schroeder, M. D., Pearce, M., Fak, J., Fan, H., Unnerstall, U., Emberly, E., Rajewsky, N., Siggia, E. D. & Gaul, U. (2004) PLoS Biol. 2, E271.
35. Goriely, A., Stella, M., Coffinier, C., Kessler, D., Mailhos, C, Dessain, S. & Desplan, C. (1996) Development (Cambridge, U.K.) 122, 1641-1650.
36. Frohnhofer, H. G. & Nusslein-Volhard, C. (1986) Nature 324, 120-124.
37. Andrioli, L. P., Vasisht, V., Theodosopoulou, E., Oberstein, A. & Small, S. (2002) Development (Cambridge, U.K.) 129, 4931-4940.
38. Mlodzik, M. & Gehring, W. J. (1987) Cell 48, 465-478.
39. Rivera-Pomar, R., Lu, X., Perrimon, N., Tauben, H. & Jackle, H. (1995) Nature 376, 253-256.
40. La Rosee, A., Hader, T., Taubert, H., Rivera-Pomar, R. & Jackle, H. (1997) EMBO J. 16, 4403-4411.
41. Lehmann, R. & Nusslein-Volhard, C. (1987) Dev. Biol. 119, 402-417.
42. Wimmer, E. A., Carleton, A., Harjes, P., Turner, T. & Desplan, C. (2000) Science 287, 2476-2479.
43. Langeland, J. A., Attai, S. F., Vorwerk, K. & Carroll, S. B. (1994) Development (Cambridge, U.K.) 120, 2945-2955.
44. Clyde, D. E., Corado, M. S., Wu, X., Pare, A., Papatsenko, D. & Small, S. (2003) Nature 426, 849-853.
45. Wu, X., Vakani, R. & Small, S. (1998) Development (Cambridge, U.K.) 125, 3765-3774.
46. Hoch, M., Schroder, C., Seifert, E. & Jackle, H. (1990) EMBO J. 9, 2587-2595.
47. Wimmer, E. A., Simpson-Brose, M., Cohen, S. M., Desplan, C. & Jackle, H. (1995) Mech. Dev. 53, 235-245.
48. Kuhnlein, R. P., Bronner, G., Taubert, H. & Schuh, R. (1997) Mech. Dev. 66, 107-118.
49. Howard, K. R. & Struhl, G. (1990) Development (Cambridge, U.K.) 110, 1223-1231.
50. Fujioka, M., Emi-Sarker, Y., Yusibova, G. L., Goto, T. & Jaynes, J. B. (1999) Development (Cambridge, U.K.) 126, 2527-2538.