메뉴 건너뛰기




Volumn 5577 LNCS, Issue , 2009, Pages 263-273

Multiple alignment of biological networks: A flexible approach

Author keywords

Biological network comparison; Multiple graph alignment; Protein protein interactions

Indexed keywords

BIOLOGICAL NETWORK COMPARISON; BIOLOGICAL NETWORKS; EXACT APPROACH; GRAPH REPRESENTATION; MULTIPLE ALIGNMENT; MULTIPLE GRAPH ALIGNMENT; MULTIPLE NETWORKS; PROTEIN INTERACTION; PROTEIN-PROTEIN INTERACTION NETWORKS; PROTEIN-PROTEIN INTERACTIONS;

EID: 70350662569     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-02441-2_23     Document Type: Conference Paper
Times cited : (12)

References (21)
  • 2
    • 28444453303 scopus 로고    scopus 로고
    • Syntons, metabolons and interactons: An exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
    • Boyer, F., Morgat, A., Labarre, L., Pothier, J., Viari, A.: Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. Bioinformatics 21(23), 4209-4215 (2005)
    • (2005) Bioinformatics , vol.21 , Issue.23 , pp. 4209-4215
    • Boyer, F.1    Morgat, A.2    Labarre, L.3    Pothier, J.4    Viari, A.5
  • 3
    • 34248545722 scopus 로고    scopus 로고
    • The identification of similarities between biological networks: Application to the metabolome and interactome
    • Cootes, A.P., Muggleton, S.H., Sternberg, M.J.: The identification of similarities between biological networks: Application to the metabolome and interactome. Journal of Molecular Biology 369(4), 1126-1139 (2007)
    • (2007) Journal of Molecular Biology , vol.369 , Issue.4 , pp. 1126-1139
    • Cootes, A.P.1    Muggleton, S.H.2    Sternberg, M.J.3
  • 4
    • 70350701238 scopus 로고    scopus 로고
    • Denielou, Y.-P., Boyer, F., Sagot, M.-F., Viari, A.: Recovering isofunctional genes: a synteny-based approach. In: JOBIM, pp. 11-16 (2008)
    • Denielou, Y.-P., Boyer, F., Sagot, M.-F., Viari, A.: Recovering isofunctional genes: a synteny-based approach. In: JOBIM, pp. 11-16 (2008)
  • 5
    • 34547840254 scopus 로고    scopus 로고
    • Identification of functional modules from conserved ancestral protein protein interactions
    • Dutkowsky, J., Tiuryn, J.: Identification of functional modules from conserved ancestral protein protein interactions. Bioinformatics 23(13) (2007)
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Dutkowsky, J.1    Tiuryn, J.2
  • 6
    • 47249149365 scopus 로고    scopus 로고
    • Flannick, J.A., Novak, A.F., Do, C.B., Srinivasan, B.S., Batzoglou, S.: Automatic parameter learning for multiple network alignment. In: Vingron, M., Wong, L. (eds.) RECOMB 2008. LNCS (LNBI), 4955, pp. 214-231. Springer, Heidelberg (2008)
    • Flannick, J.A., Novak, A.F., Do, C.B., Srinivasan, B.S., Batzoglou, S.: Automatic parameter learning for multiple network alignment. In: Vingron, M., Wong, L. (eds.) RECOMB 2008. LNCS (LNBI), vol. 4955, pp. 214-231. Springer, Heidelberg (2008)
  • 7
    • 33748257786 scopus 로고    scopus 로고
    • Græm-lin: General and robust alignment of multiple large interaction networks
    • Flannick, J., Novak, A., Srinivasan, B.S., McAdams, H.H., Batzoglou, S.: Græm-lin: general and robust alignment of multiple large interaction networks. Genome Res. 16(9), 1169-1181 (2006)
    • (2006) Genome Res , vol.16 , Issue.9 , pp. 1169-1181
    • Flannick, J.1    Novak, A.2    Srinivasan, B.S.3    McAdams, H.H.4    Batzoglou, S.5
  • 8
    • 70350698377 scopus 로고    scopus 로고
    • Gai, A.T., Habib, M., Paul, C., Raffmot, M.: Identifying Common Connected Components of Graphs. Technical report, LIRMM (2003)
    • Gai, A.T., Habib, M., Paul, C., Raffmot, M.: Identifying Common Connected Components of Graphs. Technical report, LIRMM (2003)
  • 9
    • 70350672256 scopus 로고    scopus 로고
    • Habib, M., Paul, C., Raffmot, M.: Maximal Common Connected Sets of Interval Graphs. In: Sahinalp, S.C., Muthukrishnan, S.M., Dogrusoz, U. (eds.) CPM 2004. LNCS, 3109, pp. 347-358. Springer, Heidelberg (2004)
    • Habib, M., Paul, C., Raffmot, M.: Maximal Common Connected Sets of Interval Graphs. In: Sahinalp, S.C., Muthukrishnan, S.M., Dogrusoz, U. (eds.) CPM 2004. LNCS, vol. 3109, pp. 347-358. Springer, Heidelberg (2004)
  • 10
    • 47249127315 scopus 로고    scopus 로고
    • Kalaev, M., Bafna, V., Sharan, R.: Fast and accurate alignment of multiple protein networks. In: Vingron, M., Wong, L. (eds.) RECOMB 2008. LNCS (LNBI), 4955, pp. 246-256. Springer, Heidelberg (2008)
    • Kalaev, M., Bafna, V., Sharan, R.: Fast and accurate alignment of multiple protein networks. In: Vingron, M., Wong, L. (eds.) RECOMB 2008. LNCS (LNBI), vol. 4955, pp. 246-256. Springer, Heidelberg (2008)
  • 15
    • 23844447959 scopus 로고    scopus 로고
    • Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
    • Sharan, R., Ideker, T., Kelley, B., Shamir, R., Karp, R.M.: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. J. Comput. Biol. 12(6), 835-846 (2005)
    • (2005) J. Comput. Biol , vol.12 , Issue.6 , pp. 835-846
    • Sharan, R.1    Ideker, T.2    Kelley, B.3    Shamir, R.4    Karp, R.M.5
  • 17
    • 34547416529 scopus 로고    scopus 로고
    • Singh, R., Xu, J., Berger, B.: Pairwise global alignment of protein interaction networks by matching neighborhood topology. In: Speed, T., Huang, H. (eds.) RECOMB 2007. LNCS (LNBI), 4453, pp. 16-31. Springer, Heidelberg (2007)
    • Singh, R., Xu, J., Berger, B.: Pairwise global alignment of protein interaction networks by matching neighborhood topology. In: Speed, T., Huang, H. (eds.) RECOMB 2007. LNCS (LNBI), vol. 4453, pp. 16-31. Springer, Heidelberg (2007)
  • 18
    • 51349087811 scopus 로고    scopus 로고
    • Global alignment of multiple protein interaction networks with application to functional orthology detection
    • Singh, R., Xu, J., Berger, B.: Global alignment of multiple protein interaction networks with application to functional orthology detection. Proceedings of the National Academy of Sciences 105(35), 12763-12768 (2008)
    • (2008) Proceedings of the National Academy of Sciences , vol.105 , Issue.35 , pp. 12763-12768
    • Singh, R.1    Xu, J.2    Berger, B.3
  • 19
    • 33745805365 scopus 로고    scopus 로고
    • Srinivasan, B.S., Novak, A.F., Flannick, J.A., Batzoglou, S., McAdams, H.H.: Integrated protein interaction networks for 11 microbes. In: Apostolico, A., Guerra, C., Istrail, S., Pevzner, P.A., Waterman, M. (eds.) RECOMB 2006. LNCS (LNBI), 3909, pp. 1-14. Springer, Heidelberg (2006)
    • Srinivasan, B.S., Novak, A.F., Flannick, J.A., Batzoglou, S., McAdams, H.H.: Integrated protein interaction networks for 11 microbes. In: Apostolico, A., Guerra, C., Istrail, S., Pevzner, P.A., Waterman, M. (eds.) RECOMB 2006. LNCS (LNBI), vol. 3909, pp. 1-14. Springer, Heidelberg (2006)
  • 20
    • 61949276439 scopus 로고    scopus 로고
    • Tian, W., Samatova, N.F.: Pairwise alignment of interaction networks by fast identification of maximal conserved patterns. In: PSB 2009, pp. 99-110 (2009)
    • Tian, W., Samatova, N.F.: Pairwise alignment of interaction networks by fast identification of maximal conserved patterns. In: PSB 2009, pp. 99-110 (2009)
  • 21
    • 0035279936 scopus 로고    scopus 로고
    • Towards an understanding of complex protein networks
    • Tucker, C.L., Gera, J.F., Uetz, P.: Towards an understanding of complex protein networks. Trends in Cell Biology 11(3), 102-106 (2001)
    • (2001) Trends in Cell Biology , vol.11 , Issue.3 , pp. 102-106
    • Tucker, C.L.1    Gera, J.F.2    Uetz, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.