메뉴 건너뛰기




Volumn 4955 LNBI, Issue , 2008, Pages 246-256

Fast and accurate alignment of multiple protein networks

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGY; BOOLEAN FUNCTIONS; MOLECULAR BIOLOGY; MOLECULAR STRUCTURE;

EID: 47249127315     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-78839-3_21     Document Type: Conference Paper
Times cited : (39)

References (18)
  • 1
    • 0010656061 scopus 로고    scopus 로고
    • Exploring the yeast protein interactome using comprehensive two-hybrid projects
    • Ito, T., Chiba, T., Yoshida, M.: Exploring the yeast protein interactome using comprehensive two-hybrid projects. Trends Biotechnology 19, 23-27 (2001)
    • (2001) Trends Biotechnology , vol.19 , pp. 23-27
    • Ito, T.1    Chiba, T.2    Yoshida, M.3
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold, R., Mann, M.: Mass spectrometry-based proteomics. Nature 422, 198-207 (2003)
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 3
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz, P., et al.: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-627 (2000)
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 4
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito, T., et al.: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98, 4569-4574 (2001)
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 5
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho, Y., et al.: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183 (2002)
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 6
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin, A., et al.: Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147 (2002)
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.1
  • 7
    • 25144498379 scopus 로고    scopus 로고
    • A human protein-protein interaction network: A resource for annotating the proteome
    • Stelzl, U., et al.: A human protein-protein interaction network: a resource for annotating the proteome. Cell 122, 830-832 (2005)
    • (2005) Cell , vol.122 , pp. 830-832
    • Stelzl, U.1
  • 8
    • 0141593601 scopus 로고    scopus 로고
    • Conserved pathways within bacteria and yeast as revealed by global protein network alignment
    • Kelley, B., et al.: Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl. Acad. Sci. 100, 11394-11399 (2003)
    • (2003) Proc. Natl. Acad. Sci , vol.100 , pp. 11394-11399
    • Kelley, B.1
  • 9
    • 23844447959 scopus 로고    scopus 로고
    • Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
    • Sharan, R., Ideker, T., Kelley, B., Shamir, R., Karp, R.: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. Journal of Computational Biology 12, 835-846 (2005)
    • (2005) Journal of Computational Biology , vol.12 , pp. 835-846
    • Sharan, R.1    Ideker, T.2    Kelley, B.3    Shamir, R.4    Karp, R.5
  • 10
    • 33645985807 scopus 로고    scopus 로고
    • Pairwise local alignment of protein interaction networks guided by models of evolution
    • Koyuturk, M., et al.: Pairwise local alignment of protein interaction networks guided by models of evolution. Journal of Computational Biology 13, 182-199 (2006)
    • (2006) Journal of Computational Biology , vol.13 , pp. 182-199
    • Koyuturk, M.1
  • 11
    • 13844314048 scopus 로고    scopus 로고
    • Conserved patterns of protein interaction in multiple species
    • Sharan, R., et al.: Conserved patterns of protein interaction in multiple species. Proc. Natl. Acad. Sci. 102, 1974-1979 (2005)
    • (2005) Proc. Natl. Acad. Sci , vol.102 , pp. 1974-1979
    • Sharan, R.1
  • 12
    • 33748257786 scopus 로고    scopus 로고
    • Graemlin:general and robust alignment of multiple large interaction networks
    • Flannick, J., Novak, A., Srinivasan, B., McAdams, H., Batzoglou, S.: Graemlin:general and robust alignment of multiple large interaction networks. Genome Research 16, 1169-1181 (2006)
    • (2006) Genome Research , vol.16 , pp. 1169-1181
    • Flannick, J.1    Novak, A.2    Srinivasan, B.3    McAdams, H.4    Batzoglou, S.5
  • 13
    • 34547840254 scopus 로고    scopus 로고
    • Identification of functional modules from conserved ancestral protein-protein interactions
    • Dutkowsky, J., Tiuryn, J.: Identification of functional modules from conserved ancestral protein-protein interactions. Bioinformatics 23, 149-158 (2007)
    • (2007) Bioinformatics , vol.23 , pp. 149-158
    • Dutkowsky, J.1    Tiuryn, J.2
  • 15
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
    • Pellegrini, M., Marcotte, E.M., Thompson, M.J., Eisenberg, D., Yeates, T.O.: Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. PNAS 96, 4285-4288 (1999)
    • (1999) PNAS , vol.96 , pp. 4285-4288
    • Pellegrini, M.1    Marcotte, E.M.2    Thompson, M.J.3    Eisenberg, D.4    Yeates, T.O.5
  • 16
    • 0034069495 scopus 로고    scopus 로고
    • Ashburner, M., et al.: The gene ontology consortium. gene ontology: Tool for the unification of biology 25, 25-29 (2000)
    • Ashburner, M., et al.: The gene ontology consortium. gene ontology: Tool for the unification of biology 25, 25-29 (2000)
  • 17
    • 12344269924 scopus 로고    scopus 로고
    • Go:termfinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes
    • Boyle, E., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J., Sherlock, G.: Go:termfinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes. Bioinformatics 20, 3710-3715 (2004)
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5    Cherry, J.6    Sherlock, G.7
  • 18
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., Hochberg, Y.: Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society 57 (1), 289-300 (1995)
    • (1995) Journal of the Royal Statistical Society , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.