-
1
-
-
0014860857
-
An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution
-
10.1007/BF00486096. 5489762
-
An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution. WM Fitch E Markowitz, Biochem Genet 1970 4 579 593 10.1007/BF00486096 5489762
-
(1970)
Biochem Genet
, vol.4
, pp. 579-593
-
-
Fitch, W.M.1
Markowitz, E.2
-
2
-
-
0032728408
-
Statistical methods for testing functional divergence after gene duplication
-
10605109
-
Statistical methods for testing functional divergence after gene duplication. X Gu, Mol Biol Evol 1999 16 1664 1674 10605109
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1664-1674
-
-
Gu, X.1
-
3
-
-
0036134757
-
Heterotachy, an important process of protein evolution
-
11752184
-
Heterotachy, an important process of protein evolution. P Lopez D Casane H Philippe, Mol Biol Evol 2002 19 1 7 11752184
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1-7
-
-
Lopez, P.1
Casane, D.2
Philippe, H.3
-
4
-
-
0028922906
-
Testing the covarion hypothesis of molecular evolution
-
7739391
-
Testing the covarion hypothesis of molecular evolution. MM Miyamoto WM Fitch, Mol Biol Evol 1995 12 503 513 7739391
-
(1995)
Mol Biol Evol
, vol.12
, pp. 503-513
-
-
Miyamoto, M.M.1
Fitch, W.M.2
-
5
-
-
0036789261
-
An empirical analysis of mt 16S rRNA covarion-like evolution in insects: Site-specific rate variation is clustered and frequently detected
-
10.1007/s00239-002-2341-1. 12355265
-
An empirical analysis of mt 16S rRNA covarion-like evolution in insects: site-specific rate variation is clustered and frequently detected. B Misof CL Anderson TR Buckley D Erpenbeck A Rickert K Misof, J Mol Evol 2002 55 460 469 10.1007/s00239-002-2341-1 12355265
-
(2002)
J Mol Evol
, vol.55
, pp. 460-469
-
-
Misof, B.1
Anderson, C.L.2
Buckley, T.R.3
Erpenbeck, D.4
Rickert, A.5
Misof, K.6
-
7
-
-
0031986279
-
Modeling the covarion hypothesis of nucleotide substitution
-
10.1016/S0025-5564(97)00081-3. 9401352
-
Modeling the covarion hypothesis of nucleotide substitution. C Tuffley M Steel, Math Biosci 1998 147 63 91 10.1016/S0025-5564(97)00081-3 9401352
-
(1998)
Math Biosci
, vol.147
, pp. 63-91
-
-
Tuffley, C.1
Steel, M.2
-
8
-
-
0036097894
-
Testing a covariotide model of DNA substitution
-
11961103
-
Testing a covariotide model of DNA substitution. JP Huelsenbeck, Mol Biol Evol 2002 19 698 707 11961103
-
(2002)
Mol Biol Evol
, vol.19
, pp. 698-707
-
-
Huelsenbeck, J.P.1
-
9
-
-
0035029534
-
Maximum-likelihood phylogenetic analysis under a covarion-like model
-
11319270
-
Maximum-likelihood phylogenetic analysis under a covarion-like model. N Galtier, Mol Biol Evol 2001 18 866 873 11319270
-
(2001)
Mol Biol Evol
, vol.18
, pp. 866-873
-
-
Galtier, N.1
-
10
-
-
33845900956
-
Testing for covarion-like evolution in protein sequences
-
10.1093/molbev/msl155. 17056642
-
Testing for covarion-like evolution in protein sequences. HC Wang M Spencer E Susko AJ Roger, Mol Biol Evol 2007 24 294 305 10.1093/molbev/msl155 17056642
-
(2007)
Mol Biol Evol
, vol.24
, pp. 294-305
-
-
Wang, H.C.1
Spencer, M.2
Susko, E.3
Roger, A.J.4
-
11
-
-
47649095950
-
Spatial and temporal heterogeneity in nucleotide sequence evolution
-
10.1093/molbev/msn119. 18502771
-
Spatial and temporal heterogeneity in nucleotide sequence evolution. S Whelan, Mol Biol Evol 2008 25 1683 1694 10.1093/molbev/msn119 18502771
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1683-1694
-
-
Whelan, S.1
-
12
-
-
59649120493
-
The identifiability of covarion models in phylogenetics
-
10.1109/TCBB.2008.52. 19179700
-
The identifiability of covarion models in phylogenetics. ES Allman JA Rhodes, IEEE/ACM Trans Comput Biol Bioinform 2009 6 76 88 10.1109/TCBB.2008.52 19179700
-
(2009)
IEEE/ACM Trans Comput Biol Bioinform
, vol.6
, pp. 76-88
-
-
Allman, E.S.1
Rhodes, J.A.2
-
13
-
-
0036730253
-
Testing for differences in rates-across-sites distributions in phylogenetic subtrees
-
12200479
-
Testing for differences in rates-across-sites distributions in phylogenetic subtrees. E Susko Y Inagaki C Field ME Holder AJ Roger, Mol Biol Evol 2002 19 1514 1523 12200479
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1514-1523
-
-
Susko, E.1
Inagaki, Y.2
Field, C.3
Holder, M.E.4
Roger, A.J.5
-
14
-
-
7244221755
-
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
-
10.1038/nature02917. 15496922
-
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. B Kolaczkowski JW Thornton, Nature 2004 431 980 984 10.1038/nature02917 15496922
-
(2004)
Nature
, vol.431
, pp. 980-984
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
15
-
-
17744400517
-
Likelihood, parsimony, and heterogeneous evolution
-
10.1093/molbev/msi123. 15746012
-
Likelihood, parsimony, and heterogeneous evolution. M Spencer E Susko AJ Roger, Mol Biol Evol 2005 22 1161 1164 10.1093/molbev/msi123 15746012
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1161-1164
-
-
Spencer, M.1
Susko, E.2
Roger, A.J.3
-
16
-
-
39649096708
-
Evaluation of the models handling heterotachy in phylogenetic inference
-
10.1186/1471-2148-7-206. 17974035
-
Evaluation of the models handling heterotachy in phylogenetic inference. Y Zhou N Rodrigue N Lartillot H Philippe, BMC Evol Biol 2007 7 206 10.1186/1471-2148-7-206 17974035
-
(2007)
BMC Evol Biol
, vol.7
, pp. 206
-
-
Zhou, Y.1
Rodrigue, N.2
Lartillot, N.3
Philippe, H.4
-
17
-
-
44649184070
-
A mixed branch length model of heterotachy improves phylogenetic accuracy
-
10.1093/molbev/msn042. 18319244
-
A mixed branch length model of heterotachy improves phylogenetic accuracy. B Kolaczkowski JW Thornton, Mol Biol Evol 2008 25 1054 1066 10.1093/molbev/msn042 18319244
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1054-1066
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
18
-
-
57149106289
-
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
-
10.1098/rstb.2008.0178. 18852097
-
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo. M Pagel A Meade, Philos Trans R Soc Lond B Biol Sci 2008 363 3955 3964 10.1098/rstb.2008.0178 18852097
-
(2008)
Philos Trans R Soc Lond B Biol Sci
, vol.363
, pp. 3955-3964
-
-
Pagel, M.1
Meade, A.2
-
19
-
-
38649105504
-
Topological estimation biases with covarion evolution
-
10.1007/s00239-007-9062-4. 18080080
-
Topological estimation biases with covarion evolution. HC Wang E Susko M Spencer AJ Roger, J Mol Evol 2008 66 50 60 10.1007/s00239-007-9062-4 18080080
-
(2008)
J Mol Evol
, vol.66
, pp. 50-60
-
-
Wang, H.C.1
Susko, E.2
Spencer, M.3
Roger, A.J.4
-
21
-
-
16344379182
-
Covarion structure in plastid genome evolution: A new statistical test
-
10.1093/molbev/msi076. 15625184
-
Covarion structure in plastid genome evolution: a new statistical test. C Ane JG Burleigh MM McMahon MJ Sanderson, Mol Biol Evol 2005 22 914 924 10.1093/molbev/msi076 15625184
-
(2005)
Mol Biol Evol
, vol.22
, pp. 914-924
-
-
Ane, C.1
Burleigh, J.G.2
McMahon, M.M.3
Sanderson, M.J.4
-
22
-
-
45849119373
-
Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites
-
10.1093/molbev/msn098. 18424773
-
Difficulties in testing for covarion-like properties of sequences under the confounding influence of changing proportions of variable sites. N Gruenheit PJ Lockhart M Steel W Martin, Mol Biol Evol 2008 25 1512 1520 10.1093/molbev/msn098 18424773
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1512-1520
-
-
Gruenheit, N.1
Lockhart, P.J.2
Steel, M.3
Martin, W.4
-
23
-
-
0032825223
-
The root of the tree of life in the light of the covarion model
-
DOI 10.1007/PL00006572
-
The root of the tree of life in the light of the covarion model. P Lopez P Forterre H Philippe, J Mol Evol 1999 49 496 508 10.1007/PL00006572 10486007 (Pubitemid 29463392)
-
(1999)
Journal of Molecular Evolution
, vol.49
, Issue.4
, pp. 496-508
-
-
Lopez, P.1
Forterre, P.2
Philippe, H.3
-
24
-
-
0035895207
-
Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors
-
10.1073/pnas.98.2.548. 11209054
-
Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors. EA Gaucher MM Miyamoto SA Benner, Proc Natl Acad Sci USA 2001 98 548 552 10.1073/pnas.98.2.548 11209054
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 548-552
-
-
Gaucher, E.A.1
Miyamoto, M.M.2
Benner, S.A.3
-
25
-
-
0035807886
-
A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins
-
10.1073/pnas.251526398. 11734650
-
A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins. B Knudsen MM Miyamoto, Proc Natl Acad Sci USA 2001 98 14512 14517 10.1073/pnas.251526398 11734650
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 14512-14517
-
-
Knudsen, B.1
Miyamoto, M.M.2
-
26
-
-
0037036501
-
A covarion-based method for detecting molecular adaptation: Application to the evolution of primate mitochondrial genomes
-
10.1098/rspb.2002.2025. 12079652
-
A covarion-based method for detecting molecular adaptation: application to the evolution of primate mitochondrial genomes. T Pupko N Galtier, Proc Biol Sci 2002 269 1313 1316 10.1098/rspb.2002.2025 12079652
-
(2002)
Proc Biol Sci
, vol.269
, pp. 1313-1316
-
-
Pupko, T.1
Galtier, N.2
-
27
-
-
33745584327
-
An improved statistical method for detecting heterotachy in nucleotide sequences
-
10.1093/molbev/msl006. 16672284
-
An improved statistical method for detecting heterotachy in nucleotide sequences. G Baele J Raes Y Van de Peer S Vansteelandt, Mol Biol Evol 2006 23 1397 1405 10.1093/molbev/msl006 16672284
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1397-1405
-
-
Baele, G.1
Raes, J.2
De, P.Y.V.3
Vansteelandt, S.4
-
28
-
-
57149084079
-
Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes
-
10.1371/journal.pcbi.1000214. 18989394
-
Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes. O Penn A Stern ND Rubinstein J Dutheil E Bacharach N Galtier T Pupko, PLoS Comput Biol 2008 4 1000214 10.1371/journal.pcbi.1000214 18989394
-
(2008)
PLoS Comput Biol
, vol.4
, pp. 51000214
-
-
Penn, O.1
Stern, A.2
Rubinstein, N.D.3
Dutheil, J.4
Bacharach, E.5
Galtier, N.6
Pupko, T.7
-
29
-
-
0036313499
-
A simple covarion-based approach to analyse nucleotide substitution rates
-
A simple covarion-based approach to analyse nucleotide substitution rates. J Siltberg DA Liberles, J Mol Biol 2002 15 588 594
-
(2002)
J Mol Biol
, vol.15
, pp. 588-594
-
-
Siltberg, J.1
Liberles, D.A.2
-
30
-
-
4444357279
-
Modeling the site-specific variation of selection patterns along lineages
-
10.1073/pnas.0402177101. 15326304
-
Modeling the site-specific variation of selection patterns along lineages. S Guindon AG Rodrigo KA Dyer JP Huelsenbeck, Proc Natl Acad Sci USA 2004 101 12957 12962 10.1073/pnas.0402177101 15326304
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12957-12962
-
-
Guindon, S.1
Rodrigo, A.G.2
Dyer, K.A.3
Huelsenbeck, J.P.4
-
31
-
-
34248157297
-
Identifying dramatic selection shifts in phylogenetic trees
-
10.1186/1471-2148-7-S1-S10. 17288568
-
Identifying dramatic selection shifts in phylogenetic trees. KS Dorman, BMC Evol Biol 2007 7 Suppl 1 10 10.1186/1471-2148-7-S1-S10 17288568
-
(2007)
BMC Evol Biol
, vol.7
, Issue.SUPPL 1
, pp. 1910
-
-
Dorman, K.S.1
-
32
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
10.1007/BF00160154. 7932792
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Z Yang, J Mol Evol 1994 39 306 314 10.1007/BF00160154 7932792
-
(1994)
J Mol Evol
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
33
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
1633570
-
The rapid generation of mutation data matrices from protein sequences. DT Jones WR Taylor JM Thornton, Comput Appl Biosci 1992 8 275 282 1633570
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
34
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
11319253
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. S Whelan N Goldman, Mol Biol Evol 2001 18 691 699 11319253
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
35
-
-
45849154166
-
An improved general amino acid replacement matrix
-
10.1093/molbev/msn067. 18367465
-
An improved general amino acid replacement matrix. SQ Le O Gascuel, Mol Biol Evol 2008 25 1307 1320 10.1093/molbev/msn067 18367465
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
36
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
10.1007/BF01734359. 7288891
-
Evolutionary trees from DNA sequences: a maximum likelihood approach. J Felsenstein, J Mol Evol 1981 17 368 376 10.1007/BF01734359 7288891
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
37
-
-
4544355899
-
Markov-modulated Markov chains and the covarion process of molecular evolution
-
10.1089/cmb.2004.11.727. 15579241
-
Markov-modulated Markov chains and the covarion process of molecular evolution. N Galtier A Jean-Marie, J Comput Biol 2004 11 727 733 10.1089/cmb.2004.11.727 15579241
-
(2004)
J Comput Biol
, vol.11
, pp. 727-733
-
-
Galtier, N.1
Jean-Marie, A.2
-
38
-
-
0031829758
-
Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
-
9656487
-
Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. N Galtier M Gouy, Mol Biol Evol 1998 15 871 879 9656487
-
(1998)
Mol Biol Evol
, vol.15
, pp. 871-879
-
-
Galtier, N.1
Gouy, M.2
-
39
-
-
0003437302
-
PHYLIP (Phylogeny Inference Package) version 3.6
-
Department of Genome Sciences, University of Washington, Seattle
-
PHYLIP (Phylogeny Inference Package) version 3.6. J Felsenstein, Distributed by the author Department of Genome Sciences, University of Washington, Seattle 2005
-
(2005)
Distributed by the Author
-
-
Felsenstein, J.1
-
41
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520. 14530136
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
42
-
-
27744524191
-
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
-
10.1080/10635150500234609. 16243762
-
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. H Brinkmann M van der Giezen Y Zhou G Poncelin de Raucourt H Philippe, Syst Biol 2005 54 743 757 10.1080/10635150500234609 16243762
-
(2005)
Syst Biol
, vol.54
, pp. 743-757
-
-
Brinkmann, H.1
Van Der Giezen, M.2
Zhou, Y.3
Poncelin De Raucourt, G.4
Philippe, H.5
-
43
-
-
62649113993
-
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"
-
10.1073/pnas.0807880106. 19237557
-
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". V Hampl L Hug JW Leigh JB Dacks BF Lang AG Simpson AJ Roger, Proc Natl Acad Sci USA 2009 106 3859 3864 10.1073/pnas.0807880106 19237557
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3859-3864
-
-
Hampl, V.1
Hug, L.2
Leigh, J.W.3
Dacks, J.B.4
Lang, B.F.5
Simpson, A.G.6
Roger, A.J.7
-
44
-
-
3042601821
-
Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies
-
10.1093/molbev/msh130. 15034136
-
Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies. Y Inagaki E Susko NM Fast AJ Roger, Mol Biol Evol 2004 21 1340 1349 10.1093/molbev/msh130 15034136
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1340-1349
-
-
Inagaki, Y.1
Susko, E.2
Fast, N.M.3
Roger, A.J.4
-
45
-
-
34248159030
-
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
-
10.1186/1471-2148-7-S1-S4. 17288577
-
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. N Lartillot H Brinkmann H Philippe, BMC Evol Biol 2007 7 Suppl 1 4 10.1186/1471-2148-7-S1-S4 17288577
-
(2007)
BMC Evol Biol
, vol.7
, Issue.SUPPL 1
, pp. 194
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
46
-
-
34047227628
-
Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements
-
10.1093/molbev/msm029. 17299026
-
Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements. IB Rogozin YI Wolf L Carmel EV Koonin, Mol Biol Evol 2007 24 1080 1090 10.1093/molbev/msm029 17299026
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1080-1090
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Carmel, L.3
Koonin, E.V.4
-
47
-
-
60049091295
-
A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny
-
10.1186/1471-2148-8-331. 19087270
-
A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny. HC Wang K Li E Susko AJ Roger, BMC Evol Biol 2008 8 331 10.1186/1471-2148-8-331 19087270
-
(2008)
BMC Evol Biol
, vol.8
, pp. 331
-
-
Wang, H.C.1
Li, K.2
Susko, E.3
Roger, A.J.4
-
48
-
-
0033819550
-
Measuring shifts in function and evolutionary opportunity using variability profiles: A case study of the globins
-
11029067
-
Measuring shifts in function and evolutionary opportunity using variability profiles: a case study of the globins. GJ Naylor M Gerstein, J Mol Evol 2000 51 223 233 11029067
-
(2000)
J Mol Evol
, vol.51
, pp. 223-233
-
-
Naylor, G.J.1
Gerstein, M.2
-
49
-
-
0028235772
-
The superoxide dismutase molecular clock revisited
-
10.1073/pnas.91.15.6802. 8041700
-
The superoxide dismutase molecular clock revisited. WM Fitch FJ Ayala, Proc Natl Acad Sci USA 1994 91 6802 6807 10.1073/pnas.91.15.6802 8041700
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 6802-6807
-
-
Fitch, W.M.1
Ayala, F.J.2
-
50
-
-
0031595301
-
Self-organizing tree growing network for classifying amino acids
-
10.1093/bioinformatics/14.4.376. 9632835
-
Self-organizing tree growing network for classifying amino acids. HC Wang J Dopazo JM Carazo, Bioinformatics 1998 14 376 377 10.1093/bioinformatics/14.4. 376 9632835
-
(1998)
Bioinformatics
, vol.14
, pp. 376-377
-
-
Wang, H.C.1
Dopazo, J.2
Carazo, J.M.3
-
51
-
-
35748943561
-
On reduced amino acid alphabets for phylogenetic inference
-
10.1093/molbev/msm144. 17652333
-
On reduced amino acid alphabets for phylogenetic inference. E Susko AJ Roger, Mol Biol Evol 2007 24 2139 2150 10.1093/molbev/msm144 17652333
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2139-2150
-
-
Susko, E.1
Roger, A.J.2
-
52
-
-
34547479718
-
An empirical test of the concomitantly variable codon hypothesis
-
10.1073/pnas.0701900104. 17578921
-
An empirical test of the concomitantly variable codon hypothesis. LM Merlo M Lunzer AM Dean, Proc Natl Acad Sci USA 2007 104 10938 10943 10.1073/pnas.0701900104 17578921
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 10938-10943
-
-
Merlo, L.M.1
Lunzer, M.2
Dean, A.M.3
-
53
-
-
33747798028
-
The origin and diversification of eukaryotes: Problems with molecular phylogenetics and molecular clock estimation
-
10.1098/rstb.2006.1845. 16754613
-
The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation. AJ Roger LA Hug, Philos Trans R Soc Lond B Biol Sci 2006 361 1039 1054 10.1098/rstb.2006.1845 16754613
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 1039-1054
-
-
Roger, A.J.1
Hug, L.A.2
-
54
-
-
0029935637
-
Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
-
10.1073/pnas.93.5.1930. 8700861
-
Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis. PJ Lockhart AW Larkum M Steel PJ Waddell D Penny, Proc Natl Acad Sci USA 1996 93 1930 1934 10.1073/pnas.93.5.1930 8700861
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1930-1934
-
-
Lockhart, P.J.1
Larkum, A.W.2
Steel, M.3
Waddell, P.J.4
Penny, D.5
-
55
-
-
58149293644
-
LineageSpecificSeqgen: Generating sequence data with lineage-specific variation in the proportion of variable sites
-
10.1186/1471-2148-8-317. 19021917
-
LineageSpecificSeqgen: generating sequence data with lineage-specific variation in the proportion of variable sites. LS Grievink D Penny MD Hendy BR Holland, BMC Evol Biol 2008 8 317 10.1186/1471-2148-8-317 19021917
-
(2008)
BMC Evol Biol
, vol.8
, pp. 317
-
-
Grievink, L.S.1
Penny, D.2
Hendy, M.D.3
Holland, B.R.4
-
56
-
-
34250754307
-
Inferring the timescale of dengue virus evolution under realistic models of DNA substitution
-
10.1007/s00239-006-0278-5. 17541679
-
Inferring the timescale of dengue virus evolution under realistic models of DNA substitution. EJ Dunham EC Holmes, J Mol Evol 2007 64 656 661 10.1007/s00239-006-0278-5 17541679
-
(2007)
J Mol Evol
, vol.64
, pp. 656-661
-
-
Dunham, E.J.1
Holmes, E.C.2
-
57
-
-
0033593370
-
Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 resolution
-
10.1006/jmbi.1998.2387. 9918724
-
Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 resolution. H Song MR Parsons S Rowsell G Leonard SE Phillips, J Mol Biol 1999 285 1245 1256 10.1006/jmbi.1998.2387 9918724
-
(1999)
J Mol Biol
, vol.285
, pp. 1245-1256
-
-
Song, H.1
Parsons, M.R.2
Rowsell, S.3
Leonard, G.4
Phillips, S.E.5
|