Microarray detection of food-borne pathogens using specific probes prepared by comparative genomics

Biosensors and Bioelectronics

Volumn 24, Issue 2, 2008, Pages 238-246

  Kim, Hyun Joong ^a   Park, Si Hong ^a   Lee, Tae Ho ^b   Nahm, Baek Hie ^b   Kim, Young Rok ^a   Kim, Hae Yeong ^a  

^a Kyung Hee University   (South Korea)

^b Myong Ji University   (South Korea)

Author keywords

Comparative genomics; Detection; Food borne pathogens; Oligonucleotide microarray; Specific probe

Indexed keywords

CANNING; DNA; FOOD PRESERVATION; GENES; NUCLEIC ACIDS; OLIGONUCLEOTIDES; ORGANIC ACIDS;

APPLIED (CO); BIO DEFENSE; COMPARATIVE GENOMICS; CROSS HYBRIDIZATION; DENDROGRAM; DISCRIMINATING POWER; DNA MICROARRAY ANALYSIS; ELSEVIER (CO); FOOD INDUSTRIES; FOOD SAFETY; FOOD-BORNE PATHOGENS; GENOME SEQUENCING; GENOMIC DNA; IN ORDER; MICRO ARRAYS; MICRO-ARRAY DETECTION; MICROARRAY ANALYSIS; MICROARRAY DATA; NON-PATHOGENIC SPECIES; OLIGONUCLEOTIDE PROBES; PATHOGENIC SPECIES;

PATHOGENS;

BACTERIAL DNA; GENOMIC DNA;

ARTICLE; BACILLALES; BACTERIAL GENOME; BACTERIUM IDENTIFICATION; CAMPYLOBACTER JEJUNI; CLOSTRIDIUM BOTULINUM; CLOSTRIDIUM PERFRINGENS; COMPARATIVE GENOMIC HYBRIDIZATION; COMPUTER PROGRAM; DNA DETERMINATION; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROBE; ENTEROBACTERIACEAE; FOOD CONTAMINATION; VIBRIONACEAE;

CHROMOSOME MAPPING; DNA PROBES; DNA, BACTERIAL; FOOD ANALYSIS; FOOD CONTAMINATION; FOOD MICROBIOLOGY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 48149109780     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2008.03.019     Document Type: Article

References (32)

1. Al-Khaldi S.F., Martin S.A., Rasoly A., and Evans J.D. J. AOAC Int. 85 (2002) 906-910
2. Bodrossy L., and Sessitsch A. Curr. Opin. Microbiol. 7 (2004) 245-254
3. Burton J.E., Oshota O.J., North E., Hudson M.J., Polyanskaya N., Brehm J., Lloyd G., and Silman N.J. Mol. Cell. Probes 19 (2005) 349-357
4. Call D.R. Crit. Rev. Microbiol. 31 (2005) 91-99
5. Chakraborty T., Hain T., and Domann E. Int. J. Med. Microbiol. 290 (2000) 167-174
6. Chizhikov V., Rasooly A., Chumakov K., and Levy D.D. Appl. Environ. Microbiol. 67 (2001) 3258-3263
7. Chizhikov V., Wagner M., Ivshina A., Hoshino Y., Kapikian A.Z., and Chumakov K. J. Clin. Microbiol. 40 (2002) 2398-2407
8. Eom H.S., Hwang B.H., Kim D.H., Lee I.B., Kim Y.H., and Cha H.J. Biosens. Bioelectron. 22 (2007) 845-853
9. Jin H.Y., Tao K.H., Li Y.X., Li F.Q., and Li S.Q. World J. Gastroenterol. 11 (2005) 5811-5815
10. Kakinuma K., Fukushima M., and Kawaguchi R. Biotechnol. Bioeng. 83 (2003) 721-728
11. Keramas G., Bang D.D., Lund M., Madsen M., Rasmussen S.E., Bunkenborg H., Telleman P., and Christensen C.B.V. Mol. Cell. Probes 17 (2003) 187-196
12. Keramas G., Bang D.D., Lund M., Madsen M., Bunkenborg H., Telleman P., and Christensen C.B.V. J. Clin. Microbiol. 42 (2004) 3985-3991
13. Kim H.J., Park S.H., and Kim H.Y. Appl. Environ. Microbiol. 72 (2006) 6142-6151
14. Kim H.J., Park S.H., Lee T.H., Nahm B.H., Chung Y.H., Seo K.H., and Kim H.Y. J. Food Prot. 69 (2006) 1653-1661
15. Maynard C., Berthiaume F., Lemarchand K., Harel J., Payment P., Bayardelle P., Masson L., and Brousseau R. Appl. Environ. Microbiol. 71 (2005) 8548-8557
16. Mereghetti L., Lanotte P., Savoye-Marczuk V., Mee N.M., Audurier A., and Quentin R. Appl. Environ. Microbiol. 68 (2002) 2849-2857
17. Nadon C.A., Woodward D.L., Young C., Rodgers F.G., and Wiedmann M. J. Clin. Microbiol. 39 (2001) 2704-2707
18. Panicker G., Call D.R., Krug M.J., and Bej A.K. Appl. Environ. Microbiol. 70 (2004) 7436-7444
19. Peplies J., Glöckner F.O., and Amann R. Appl. Environ. Microbiol. 69 (2003) 1397-1407
20. Popoff M.Y. Antigenic formulas of the Salmonella serovars, 8th revision (2001), W.H.O. Collaborating Centre for Reference and Research on, Paris, France
21. Porwollik S., Boyd E.F., Choy C., Cheng P., Florea L., Proctor E., and McClelland M. J. Bacteriol. 186 (2004) 5883-5898
22. Rasko D.A., Altherr M.R., Han C.S., and Ravel J. FEMS Microbiol. Rev. 29 (2005) 303-329
23. Rijpens N.P., and Herman L.M.F. J. AOAC Int. 85 (2002) 984-995
24. Sergeev N., Distler M., Courtney S., Al-Khaldi S.F., Volokhov D., Chizhikov V., and Rasooly A. Biosens. Bioelectron. 20 (2004) 684-698
25. Sergeev N., Distler M., Vargas M., Chizhikov V., Herold K.E., and Rasooly A. J. Microbiol. Methods 65 (2006) 488-502
26. Versalovic J., and Lupski J.R. Trends Microbiol. 10 (2002) S15-S21
27. Volokhov D., Rasooly A., Chumakov K., and Chizhikov V. J. Clin. Microbiol. 40 (2002) 4720-4728
28. Volokhov D., Chizhikov V., Chumakov K., and Rasooly A. J. Clin. Microbiol. 41 (2003) 4071-4080
29. Vora G.J., Meador C.E., Stenger D.A., and Andreadis J.D. Appl. Environ. Microbiol. 70 (2004) 3047-3054
30. Wang D., Coscoy L., Zylberberg M., Avila P.C., Boushey H.A., Ganem D., and DeRisi J.L. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 15687-15692
31. Warson A.E., Krug M.J., LaFrentz S., Stanek D.R., Loge F.J., and Call D.R. Appl. Environ. Microbiol. 70 (2004) 4216-4221
32. Zhou J. Curr. Opin. Microbiol. 6 (2003) 288-294