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Volumn 48, Issue 41, 2009, Pages 9722-9733

The cis-(5R,6S)-thymine glycol lesion occupies the wobble position when mismatched with deoxyguanosine in DNA

Author keywords

[No Author keywords available]

Indexed keywords

BASE EXCISION REPAIRS; BASE PAIRS; METHYLCYTOSINE; MOLECULAR DYNAMICS CALCULATION; NMR DATA; OXIDATIVE DAMAGE; RELAXATION RATES; SOLVENT-ACCESSIBLE SURFACE AREA; TORSION ANGLE;

EID: 70350066793     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi900695e     Document Type: Article
Times cited : (22)

References (80)
  • 1
    • 0015955175 scopus 로고
    • Identification of radioproducts resulting from the breakage of thymine moiety by gamma irradiation of E. coli DNA in an aerated aqueous solution
    • Teoule, R., Bonicel, A., Bert, C., Cadet, J., and Polverelli, M. (1974) Identification of radioproducts resulting from the breakage of thymine moiety by gamma irradiation of E. coli DNA in an aerated aqueous solution. Radiat. Res. 57, 46-58.
    • (1974) Radiat. Res. , vol.57 , pp. 46-58
    • Teoule, R.1    Bonicel, A.2    Bert, C.3    Cadet, J.4    Polverelli, M.5
  • 2
    • 0019886588 scopus 로고
    • Identification of the cis-thymine glycol moiety in chemically oxidized and gamma-irradiated deoxyribonucleic acid by high-pressure liquid chromatography analysis
    • Frenkel, K., Goldstein, M. S., and Teebor, G. W. (1981) Identification of the cis-thymine glycol moiety in chemically oxidized and gamma-irradiated deoxyribonucleic acid by high-pressure liquid chromatography analysis. Biochemistry 20, 7566-7571.
    • (1981) Biochemistry , vol.20 , pp. 7566-7571
    • Frenkel, K.1    Goldstein, M.S.2    Teebor, G.W.3
  • 3
    • 0029151273 scopus 로고
    • Oxidative damage to 5-methylcytosine in DNA
    • Zuo, S., Boorstein, R. J., and Teebor, G. W. (1995) Oxidative damage to 5-methylcytosine in DNA. Nucleic Acids Res. 23, 3239-3243.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3239-3243
    • Zuo, S.1    Boorstein, R.J.2    Teebor, G.W.3
  • 4
    • 0034732883 scopus 로고    scopus 로고
    • P53 mutational spectra and the role of methylated CpG sequences
    • Pfeifer, G. P. (2000) p53 mutational spectra and the role of methylated CpG sequences. Mutat. Res. 450, 155-166.
    • (2000) Mutat. Res. , vol.450 , pp. 155-166
    • Pfeifer, G.P.1
  • 5
    • 0025829644 scopus 로고
    • Synthesis and characterization of stereoisomers of 5,6-dihydro-5,6- dihydroxy-thymidine
    • Vaishnav, Y., Holwitt, E., Swenberg, C., Lee, H. C., and Kan, L. S. (1991) Synthesis and characterization of stereoisomers of 5,6-dihydro-5,6- dihydroxy-thymidine. J. Biomol. Struct. Dyn. 8, 935-951.
    • (1991) J. Biomol. Struct. Dyn. , vol.8 , pp. 935-951
    • Vaishnav, Y.1    Holwitt, E.2    Swenberg, C.3    Lee, H.C.4    Kan, L.S.5
  • 6
    • 0026760983 scopus 로고
    • Synthesis of the diastereomers of thymidine glycol, determination of concentrations and rates of interconversion of their cis-trans epimers at equilibrium and demonstration of differential alkali lability within DNA
    • Lustig, M. J., Cadet, J., Boorstein, R. J., and Teebor, G. W. (1992) Synthesis of the diastereomers of thymidine glycol, determination of concentrations and rates of interconversion of their cis-trans epimers at equilibrium and demonstration of differential alkali lability within DNA. Nucleic Acids Res. 20, 4839-4845.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4839-4845
    • Lustig, M.J.1    Cadet, J.2    Boorstein, R.J.3    Teebor, G.W.4
  • 7
    • 0036096226 scopus 로고    scopus 로고
    • HPLC isolation and mass spectrometric characterization of two isomers of thymine glycols in oligodeoxynucleotides
    • Wang, Y. (2002) HPLC isolation and mass spectrometric characterization of two isomers of thymine glycols in oligodeoxynucleotides. Chem. Res. Toxicol. 15, 671-676.
    • (2002) Chem. Res. Toxicol. , vol.15 , pp. 671-676
    • Wang, Y.1
  • 8
    • 0343236658 scopus 로고
    • Thymine glycol and thymidine glycol in human and rat urine: A possible assay for oxidativeDNAdamage
    • Cathcart, R., Schwiers, E., Saul, R. L., and Ames, B. N. (1984) Thymine glycol and thymidine glycol in human and rat urine: A possible assay for oxidativeDNAdamage. Proc. Natl. Acad. Sci. U.S. A. 81, 5633-5637.
    • (1984) Proc. Natl. Acad. Sci. U.S. A. , vol.81 , pp. 5633-5637
    • Cathcart, R.1    Schwiers, E.2    Saul, R.L.3    Ames, B.N.4
  • 9
    • 0023988217 scopus 로고
    • Oxidative damage to DNA: Relation to species metabolic rate and life span
    • Adelman, R., Saul, R. L., and Ames, B. N. (1988) Oxidative damage to DNA: Relation to species metabolic rate and life span. Proc. Natl. Acad. Sci. U.S.A. 85, 2706-2708.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 2706-2708
    • Adelman, R.1    Saul, R.L.2    Ames, B.N.3
  • 10
    • 51349152030 scopus 로고    scopus 로고
    • Interconversion of the cis-5R,6S- And trans-5R,6R-thymine glycol lesions in duplex DNA
    • Brown, K. L., Adams, T., Jasti, V. P., Basu, A. K., and Stone, M. P. (2008) Interconversion of the cis-5R,6S- and trans-5R,6R-thymine glycol lesions in duplex DNA. J. Am. Chem. Soc. 129, 11701-11710.
    • (2008) J. Am. Chem. Soc. , vol.129 , pp. 11701-11710
    • Brown, K.L.1    Adams, T.2    Jasti, V.P.3    Basu, A.K.4    Stone, M.P.5
  • 11
    • 0001195990 scopus 로고    scopus 로고
    • Structure of a duplex DNA containing a thymine glycol residue in solution
    • Kung, H. C., and Bolton, P. H. (1997) Structure of a duplex DNA containing a thymine glycol residue in solution. J. Biol. Chem. 272, 9227-9236.
    • (1997) J. Biol. Chem. , vol.272 , pp. 9227-9236
    • Kung, H.C.1    Bolton, P.H.2
  • 12
    • 0027304370 scopus 로고
    • Characterization of the effects of a thymine glycol residue on the structure, dynamics, and stability of duplex DNA by NMR
    • Kao, J. Y., Goljer, I., Phan, T. A., and Bolton, P. H. (1993) Characterization of the effects of a thymine glycol residue on the structure, dynamics, and stability of duplex DNA by NMR. J. Biol. Chem. 268, 17787-17793.
    • (1993) J. Biol. Chem. , vol.268 , pp. 17787-17793
    • Kao, J.Y.1    Goljer, I.2    Phan, T.A.3    Bolton, P.H.4
  • 13
    • 0023664765 scopus 로고
    • Modeling and molecular mechanical studies of the cis-thymine glycol radiation damage lesion in DNA
    • Clark, J. M., Pattabiraman, N., Jarvis, W., and Beardsley, G. P. (1987) Modeling and molecular mechanical studies of the cis-thymine glycol radiation damage lesion in DNA. Biochemistry 26, 5404-5409.
    • (1987) Biochemistry , vol.26 , pp. 5404-5409
    • Clark, J.M.1    Pattabiraman, N.2    Jarvis, W.3    Beardsley, G.P.4
  • 15
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
    • Piotto, M., Saudek, V., and Sklenar, V. (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J. Biomol. NMR 2, 661-665.
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3
  • 16
    • 33847534249 scopus 로고
    • Effects of diffusion on free precession in nuclear magnetic resonance experiments
    • Carr, H. Y., and Purcell, E. M. (1954) Effects of diffusion on free precession in nuclear magnetic resonance experiments. Phys. Rev. 94, 630.
    • (1954) Phys. Rev. , vol.94 , pp. 630
    • Carr, H.Y.1    Purcell, E.M.2
  • 17
    • 36849104960 scopus 로고
    • Measurement of spin relaxation in complex systems
    • Vold, R. L., Waugh, J. S., Klein, M. P., and Phelps, D. E. (1968) Measurement of spin relaxation in complex systems. J. Chem. Phys. 48, 3831-3832.
    • (1968) J. Chem. Phys. , vol.48 , pp. 3831-3832
    • Vold, R.L.1    Waugh, J.S.2    Klein, M.P.3    Phelps, D.E.4
  • 18
    • 0029400480 scopus 로고
    • NMR Pipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMR Pipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 20
    • 0001053688 scopus 로고
    • Atheoretical study of distance determinations from NMR;Two-dimensional nuclear Overhauser effect spectra
    • Keepers, J. W., and James, T. L. (1984)Atheoretical study of distance determinations from NMR;Two-dimensional nuclear Overhauser effect spectra. J. Magn. Reson. 57, 404-426.
    • (1984) J. Magn. Reson. , vol.57 , pp. 404-426
    • Keepers, J.W.1    James, T.L.2
  • 21
    • 0001643005 scopus 로고
    • Relaxation matrix analysis of two-dimensional nuclear Overhauser effect spectra
    • James, T. L. (1991) Relaxation matrix analysis of two-dimensional nuclear Overhauser effect spectra. Curr. Opin. Struct. Biol. 1, 1042-1053.
    • (1991) Curr. Opin. Struct. Biol. , vol.1 , pp. 1042-1053
    • James, T.L.1
  • 22
    • 0024345290 scopus 로고
    • Two-dimensional nuclear Overhauser effect: Complete relaxation matrix analysis
    • DOI 10.1016/0076-6879(89)76011-0
    • Borgias, B. A., and James, T. L. (1989) Two-dimensional nuclear Overhauser effect: Complete relaxation matrix analysis. Methods Enzymol. 176, 169-183. (Pubitemid 20003081)
    • (1989) Methods in Enzymology , vol.176 , pp. 169-183
    • Borgias, B.A.1    James, T.L.2
  • 23
    • 0000425457 scopus 로고
    • MARDIGRAS;a procedure for matrix analysis of relaxation for discerning geometry of an aqueous structure
    • Borgias, B. A., and James, T. L. (1990)MARDIGRAS;a procedure for matrix analysis of relaxation for discerning geometry of an aqueous structure. J. Magn. Reson. 87, 475-487.
    • (1990) J. Magn. Reson. , vol.87 , pp. 475-487
    • Borgias, B.A.1    James, T.L.2
  • 24
    • 0029450044 scopus 로고
    • Interproton distance bounds from 2D NOE intensities: Effect of experimental noise and peak integration errors
    • Liu, H., Spielmann, H. P., Ulyanov, N. B., Wemmer, D. E., and James, T. L. (1995) Interproton distance bounds from 2D NOE intensities: Effect of experimental noise and peak integration errors. J. Biomol. NMR 6, 390-402.
    • (1995) J. Biomol. NMR , vol.6 , pp. 390-402
    • Liu, H.1    Spielmann, H.P.2    Ulyanov, N.B.3    Wemmer, D.E.4    James, T.L.5
  • 25
    • 0035742338 scopus 로고    scopus 로고
    • Measurement of homonuclear proton couplings from regular 2D COSY spectra
    • Delaglio, F., Wu, Z., and Bax, A. (2001) Measurement of homonuclear proton couplings from regular 2D COSY spectra. J. Magn. Reson. 149, 276-281.
    • (2001) J. Magn. Reson. , vol.149 , pp. 276-281
    • Delaglio, F.1    Wu, Z.2    Bax, A.3
  • 26
    • 84988109709 scopus 로고
    • Nucleic acids and nuclear magnetic resonance
    • Van De Ven, F. J. M., and Hilbers, C. W. (1988) Nucleic acids and nuclear magnetic resonance. Eur. J. Biochem. 178, 1-38.
    • (1988) Eur. J. Biochem. , vol.178 , pp. 1-38
    • Van De Ven, F.J.M.1    Hilbers, C.W.2
  • 27
    • 0026726087 scopus 로고
    • Furanose sugar conformations in DNA from NMR coupling constants
    • van Wijk, J., Huckriede, B. D., Ippel, J. H., and Altona, C. (1992) Furanose sugar conformations in DNA from NMR coupling constants. Methods Enzymol. 211, 286-306.
    • (1992) Methods Enzymol. , vol.211 , pp. 286-306
    • Van Wijk, J.1    Huckriede, B.D.2    Ippel, J.H.3    Altona, C.4
  • 30
    • 0001444487 scopus 로고    scopus 로고
    • Modeling unusual nucleic acid structures
    • (Leontes, N. B., and SantaLucia, J., Jr., Eds.) American Chemical Society, Washington, DC
    • Macke, T., and Case, D. A. (1998) Modeling unusual nucleic acid structures, in Molecular Modeling of Nucleic Acids (Leontes, N. B., and SantaLucia, J., Jr., Eds.) American Chemical Society, Washington, DC.
    • (1998) Molecular Modeling of Nucleic Acids
    • Macke, T.1    Case, D.A.2
  • 31
    • 0001398008 scopus 로고    scopus 로고
    • How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
    • Wang, J. M., Cieplak, P., and Kollman, P. A. (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21, 1049-1074.
    • (2000) J. Comput. Chem. , vol.21 , pp. 1049-1074
    • Wang, J.M.1    Cieplak, P.2    Kollman, P.A.3
  • 32
    • 0023008905 scopus 로고
    • Application of molecular dynamics with interproton distance restraints to three-dimensional protein structure determination
    • Clore, G. M., Brunger, A. T., Karplus, M., and Gronenborn, A. M. (1986) Application of molecular dynamics with interproton distance restraints to three-dimensional protein structure determination. J. Mol. Biol. 191, 523-551.
    • (1986) J. Mol. Biol. , vol.191 , pp. 523-551
    • Clore, G.M.1    Brunger, A.T.2    Karplus, M.3    Gronenborn, A.M.4
  • 33
    • 14244273182 scopus 로고    scopus 로고
    • Theory and applications of the Generalized Born solvation model in macromolecular simulations
    • DOI 10.1002/1097-0282(2000)56:4<275::AID-BIP10024>3.0.CO;2-E
    • Tsui, V., and Case, D. A. (2000) Theory and applications of the generalized Born solvation model in macromolecular simulations. Biopolymers 56, 275-291. (Pubitemid 34105875)
    • (2000) Biopolymers , vol.56 , Issue.4 , pp. 275-291
    • Tsui, V.1    Case, D.A.2
  • 34
    • 0033654297 scopus 로고    scopus 로고
    • Generalized Born models of macromolecular solvation effects
    • Bashford, D., and Case, D. A. (2000) Generalized Born models of macromolecular solvation effects. Annu. Rev. Phys. Chem. 51, 129-152.
    • (2000) Annu. Rev. Phys. Chem. , vol.51 , pp. 129-152
    • Bashford, D.1    Case, D.A.2
  • 36
    • 0026869597 scopus 로고
    • Langevin dynamics of peptides: The frictional dependence of isomerization rates of N-acetylalanyl-N′-methylamide
    • Loncharich, R. J., Brooks, B. R., and Pastor, R. W. (1992) Langevin dynamics of peptides: The frictional dependence of isomerization rates of N-acetylalanyl-N′-methylamide. Biopolymers 32, 523-535.
    • (1992) Biopolymers , vol.32 , pp. 523-535
    • Loncharich, R.J.1    Brooks, B.R.2    Pastor, R.W.3
  • 39
    • 33646940952 scopus 로고
    • Numerical integration of cartesian equations of motion of a system with constraints: Molecular dynamics of N-alkanes
    • Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical integration of cartesian equations of motion of a system with constraints: Molecular dynamics of N-alkanes. J. Comput. Phys. 23, 327-341.
    • (1977) J. Comput. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 42
    • 0030040323 scopus 로고    scopus 로고
    • Reduced surface: An efficient way to compute molecular surfaces
    • DOI 10.1002/(SICI)1097-0282(199603)38:3<305::AID-BIP4>3.0.CO;2-Y
    • Sanner, M. F., Olson, A. J., and Spehner, J. C. (1996) Reduced surface: An efficient way to compute molecular surfaces. Biopolymers 38, 305-320. (Pubitemid 2626536)
    • (1996) Biopolymers - Peptide Science Section , vol.38 , Issue.3 , pp. 305-320
    • Sanner, M.F.1    Olson, A.J.2    Spehner, J.C.3
  • 43
    • 0023395002 scopus 로고
    • Sequence-specific assignments and their use in NMR studies of DNA structure
    • Reid, B. R. (1987) Sequence-specific assignments and their use in NMR studies of DNA structure. Q. Rev. Biophys. 20, 2-28.
    • (1987) Q. Rev. Biophys. , vol.20 , pp. 2-28
    • Reid, B.R.1
  • 44
    • 0023386995 scopus 로고
    • DNA and RNA: NMR studies of conformations and dynamics in solution
    • Patel, D. J., Shapiro, L., and Hare, D. (1987) DNA and RNA: NMR studies of conformations and dynamics in solution. Q. Rev. Biophys. 20, 35-112.
    • (1987) Q. Rev. Biophys. , vol.20 , pp. 35-112
    • Patel, D.J.1    Shapiro, L.2    Hare, D.3
  • 45
    • 0000146208 scopus 로고
    • 1H NMR spectra of oligonucleotides by two-dimensional NMR spectroscopy. Application to a lac operator fragment
    • 1H NMR spectra of oligonucleotides by two-dimensional NMR spectroscopy. Application to a lac operator fragment. J. Magn. Reson. 62, 378-386.
    • (1985) J. Magn. Reson. , vol.62 , pp. 378-386
    • Boelens, R.1    Scheek, R.M.2    Dijkstra, K.3    Kaptein, R.4
  • 46
    • 0000538815 scopus 로고
    • Analytical molecular surface calculation
    • Connolly,A. (1983) Analytical molecular surface calculation. J. Appl. Crystallogr. 16, 548-558.
    • (1983) J. Appl. Crystallogr. , vol.16 , pp. 548-558
    • Connolly, A.1
  • 47
    • 33847613569 scopus 로고    scopus 로고
    • Oxidative DNA damage repair in mammalian cells: A new perspective
    • DOI 10.1016/j.dnarep.2006.10.011, PII S156878640600320X, Repair of small base lesions in DNA-from molecular biology to phenotype
    • Hazra, T. K., Das, A., Das, S., Choudhury, S., Kow, Y. W., and Roy, R. (2007) Oxidative DNA damage repair in mammalian cells: A new perspective. DNA Repair (Amsterdam) 6, 470-480. (Pubitemid 46357682)
    • (2007) DNA Repair , vol.6 , Issue.4 , pp. 470-480
    • Hazra, T.K.1    Das, A.2    Das, S.3    Choudhury, S.4    Kow, Y.W.5    Roy, R.6
  • 48
    • 0020473236 scopus 로고
    • Structure, dynamics, and energetics of deoxyguanosine 3 thymidine wobble base pair formation in the self-complementary d(CGTGAATTCGCG) duplex in solution
    • Patel, D. J., Kozlowski, S. A., Marky, L. A., Rice, J. A., Broka, C., Dallas, J., Itakura, K., and Breslauer, K. J. (1982) Structure, dynamics, and energetics of deoxyguanosine 3 thymidine wobble base pair formation in the self-complementary d(CGTGAATTCGCG) duplex in solution. Biochemistry 21, 437-444.
    • (1982) Biochemistry , vol.21 , pp. 437-444
    • Patel, D.J.1    Kozlowski, S.A.2    Marky, L.A.3    Rice, J.A.4    Broka, C.5    Dallas, J.6    Itakura, K.7    Breslauer, K.J.8
  • 49
    • 0023052466 scopus 로고
    • Wobble dG·dT pairing in right-handed DNA: Solution conformation of the d(C-G-T-G-AA-T-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra
    • Hare, D., Shapiro, L., and Patel, D. J. (1986) Wobble dG·dT pairing in right-handed DNA: Solution conformation of the d(C-G-T-G-AA-T-T-C-G- C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra. Biochemistry 25, 7445-7456.
    • (1986) Biochemistry , vol.25 , pp. 7445-7456
    • Hare, D.1    Shapiro, L.2    Patel, D.J.3
  • 50
    • 0030875847 scopus 로고    scopus 로고
    • Thermodynamics and NMR of internal G3T mismatches in DNA
    • Allawi,H.T., andSantaLucia, J., Jr. (1997)Thermodynamics and NMR of internal G3T mismatches in DNA. Biochemistry 36, 10581-10594.
    • (1997) Biochemistry , vol.36 , pp. 10581-10594
    • Allawi, H.T.1    Santalucia Jr., J.2
  • 51
    • 0023551817 scopus 로고
    • Characterization of a γ-radiation-induced decomposition product of thymidine. Crystal and molecular structure of the (-)cis(5R,6S) thymidine glycol
    • Hruska, F. E., Sebastian, R., Grand, A., Voituriez, L., and Cadet, J. (1987) Characterization of a γ-radiation-induced decomposition product of thymidine. Crystal and molecular structure of the (-)cis(5R,6S) thymidine glycol. Can. J. Chem. 65, 2618-2623.
    • (1987) Can. J. Chem. , vol.65 , pp. 2618-2623
    • Hruska, F.E.1    Sebastian, R.2    Grand, A.3    Voituriez, L.4    Cadet, J.5
  • 52
    • 33846493138 scopus 로고    scopus 로고
    • A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol
    • Aller, P., Rould, M. A., Hogg, M., Wallace, S. S., and Doublie, S. (2007) A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol. Proc. Natl. Acad. Sci. U.S.A. 104, 814-818.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 814-818
    • Aller, P.1    Rould, M.A.2    Hogg, M.3    Wallace, S.S.4    Doublie, S.5
  • 54
    • 0026737976 scopus 로고
    • Kinetics and energetics of basepair opening in 5′-d(CGCGAATTCGCG)- 3′ and a substituted dodecamer containing G·T mismatches
    • Moe, J. G., and Russu, I. M. (1992) Kinetics and energetics of basepair opening in 5′-d(CGCGAATTCGCG)-3′ and a substituted dodecamer containing G·T mismatches. Biochemistry 31, 8421-8428.
    • (1992) Biochemistry , vol.31 , pp. 8421-8428
    • Moe, J.G.1    Russu, I.M.2
  • 55
    • 0020724749 scopus 로고
    • Inducible repair of thymine ring saturation damage in phi X174 DNA
    • Achey, P. M., and Wright, C. F. (1983) Inducible repair of thymine ring saturation damage in phi X174 DNA. Radiat. Res. 93, 609-612.
    • (1983) Radiat. Res. , vol.93 , pp. 609-612
    • Achey, P.M.1    Wright, C.F.2
  • 56
    • 0022370511 scopus 로고
    • The role of specific DNA base damages in the X-ray-induced inactivation of bacteriophage PM2
    • Moran, E., and Wallace, S. S. (1985) The role of specific DNA base damages in the X-ray-induced inactivation of bacteriophage PM2. Mutat. Res. 146, 229-241.
    • (1985) Mutat. Res. , vol.146 , pp. 229-241
    • Moran, E.1    Wallace, S.S.2
  • 57
    • 0023710309 scopus 로고
    • Excision repair of thymine glycols, urea residues, and apurinic sites in Escherichia coli
    • Laspia, M. F., and Wallace, S. S. (1988) Excision repair of thymine glycols, urea residues, and apurinic sites in Escherichia coli. J. Bacteriol. 170, 3359-3366.
    • (1988) J. Bacteriol. , vol.170 , pp. 3359-3366
    • Laspia, M.F.1    Wallace, S.S.2
  • 58
    • 0023950079 scopus 로고
    • Oxidative damage in DNA. Lack of mutagenicity by thymine glycol lesions
    • Hayes, R. C., Petrullo, L. A., Huang, H. M., Wallace, S. S., and LeClerc, J. E. (1988) Oxidative damage in DNA. Lack of mutagenicity by thymine glycol lesions. J. Mol. Biol. 201, 239-246.
    • (1988) J. Mol. Biol. , vol.201 , pp. 239-246
    • Hayes, R.C.1    Petrullo, L.A.2    Huang, H.M.3    Wallace, S.S.4    LeClerc, J.E.5
  • 59
    • 0025801552 scopus 로고
    • Processing of model single-strand breaks in phi X-174 RF transfecting DNA by Escherichia coli
    • Kow, Y. W., Faundez, G., Melamede, R. J., and Wallace, S. S. (1991) Processing of model single-strand breaks in phi X-174 RF transfecting DNA by Escherichia coli. Radiat. Res. 126, 357-366.
    • (1991) Radiat. Res. , vol.126 , pp. 357-366
    • Kow, Y.W.1    Faundez, G.2    Melamede, R.J.3    Wallace, S.S.4
  • 60
    • 0023055848 scopus 로고
    • Sequence dependence for bypass of thymine glycols in DNA by DNA polymerase I
    • Hayes, R. C., and LeClerc, J. E. (1986) Sequence dependence for bypass of thymine glycols in DNA by DNA polymerase I. Nucleic Acids Res. 14, 1045-1061.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 1045-1061
    • Hayes, R.C.1    LeClerc, J.E.2
  • 61
    • 0031859082 scopus 로고    scopus 로고
    • Replication inhibition and miscoding properties of DNA templates containing a site-specific cis-thymine glycol or urea residue
    • McNulty, J. M., Jerkovic, B., Bolton, P. H., and Basu, A. K. (1998) Replication inhibition and miscoding properties of DNA templates containing a site-specific cis-thymine glycol or urea residue. Chem. Res. Toxicol. 11, 666-673.
    • (1998) Chem. Res. Toxicol. , vol.11 , pp. 666-673
    • McNulty, J.M.1    Jerkovic, B.2    Bolton, P.H.3    Basu, A.K.4
  • 62
    • 0037076519 scopus 로고    scopus 로고
    • Translesion synthesis by human DNA polymerase eta across thymine glycol lesions
    • DOI 10.1021/bi025549k
    • Kusumoto, R., Masutani, C., Iwai, S., and Hanaoka, F. (2002) Translesion synthesis by human DNA polymerase eta across thymine glycol lesions. Biochemistry 41, 6090-6099. (Pubitemid 34498915)
    • (2002) Biochemistry , vol.41 , Issue.19 , pp. 6090-6099
    • Kusumoto, R.1    Masutani, C.2    Iwai, S.3    Hanaoka, F.4
  • 63
    • 0037020269 scopus 로고    scopus 로고
    • Human DNA polymerase kappa bypasses and extends beyond thymine glycols during translesion synthesis in vitro, preferentially incorporating correct nucleotides
    • Fischhaber, P. L., Gerlach, V. L., Feaver, W. J., Hatahet, Z., Wallace, S. S., and Friedberg, E. C. (2002) Human DNA polymerase kappa bypasses and extends beyond thymine glycols during translesion synthesis in vitro, preferentially incorporating correct nucleotides. J. Biol. Chem. 277, 37604-37611.
    • (2002) J. Biol. Chem. , vol.277 , pp. 37604-37611
    • Fischhaber, P.L.1    Gerlach, V.L.2    Feaver, W.J.3    Hatahet, Z.4    Wallace, S.S.5    Friedberg, E.C.6
  • 64
    • 0024468299 scopus 로고
    • A new mechanism for repairing oxidative damage to DNA: (A)BC excinuclease removes AP sites and thymine glycols from DNA
    • Lin, J. J., and Sancar, A. (1989) A new mechanism for repairing oxidative damage to DNA: (A)BC excinuclease removes AP sites and thymine glycols from DNA. Biochemistry 28, 7979-7984.
    • (1989) Biochemistry , vol.28 , pp. 7979-7984
    • Lin, J.J.1    Sancar, A.2
  • 65
    • 0030745912 scopus 로고    scopus 로고
    • In vitro repair of oxidative DNA damage by human nucleotide excision repair system: Possible explanation for neurodegeneration in xeroderma pigmentosum patients
    • Reardon, J. T., Bessho, T., Kung, H. C., Bolton, P. H., and Sancar, A. (1997) In vitro repair of oxidative DNA damage by human nucleotide excision repair system: Possible explanation for neurodegeneration in xeroderma pigmentosum patients. Proc. Natl. Acad. Sci. U.S.A. 94, 9463-9468.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 9463-9468
    • Reardon, J.T.1    Bessho, T.2    Kung, H.C.3    Bolton, P.H.4    Sancar, A.5
  • 66
    • 0021839661 scopus 로고
    • Genetic mapping of nth, a gene affecting endonuclease III (thymine glycol-DNA glycosylase) in Escherichia coli K-12
    • Weiss, B., and Cunningham, R. P. (1985) Genetic mapping of Nth, a gene affecting endonuclease III (thymine glycol-DNA glycosylase) in Escherichia coli K-12. J. Bacteriol. 162, 607-610. (Pubitemid 15062435)
    • (1985) Journal of Bacteriology , vol.162 , Issue.2 , pp. 607-610
    • Weiss, B.1    Cunningham, R.P.2
  • 68
    • 0029814011 scopus 로고    scopus 로고
    • Molecular cloning and functional analysis of a Schizosaccharomyces pombe homologue of Escherichia coli endonuclease III
    • Roldan-Arjona, T., Anselmino, C., and Lindahl, T. (1996) Molecular cloning and functional analysis of a Schizosaccharomyces pombe homologue of Escherichia coli endonuclease III. Nucleic Acids Res. 24, 3307-3312. (Pubitemid 26294439)
    • (1996) Nucleic Acids Research , vol.24 , Issue.17 , pp. 3307-3312
    • Roldan-Arjona, T.1    Anselmino, C.2    Lindahl, T.3
  • 69
    • 5544239019 scopus 로고    scopus 로고
    • Purification of a mammalian homologue of Escherichia coli endonuclease III: Identification of a bovine pyrimidine hydrate-thymine glycol DNA-glycosylase/AP lyase by irreversible cross linking to a thymine glycol-containing oligodeoxynucleotide
    • DOI 10.1021/bi952516e
    • Hilbert, T. P., Boorstein, R. J., Kung, H. C., Bolton, P. H., Xing, D., Cunningham, R. P., and Teebor, G. W. (1996) Purification of a mammalian homologue of Escherichia coli endonuclease III: identification of a bovine pyrimidine hydrate-thymine glycol DNAse/AP lyase by irreversible cross linking to a thymine glycol-containing oligoxynucleotide. Biochemistry 35, 2505-2511. (Pubitemid 26098759)
    • (1996) Biochemistry , vol.35 , Issue.8 , pp. 2505-2511
    • Hilbert, T.P.1    Boorstein, R.J.2    Kung, H.C.3    Bolton, P.H.4    Xing, D.5    Cunningham, R.P.6    Teebor, G.W.7
  • 71
    • 0030890419 scopus 로고    scopus 로고
    • Cloning and expression of the cDNA encoding the human homologue of the DNA repair enzyme, Escherichia coli endonuclease III
    • Hilbert, T. P., Chaung, W., Boorstein, R. J., Cunningham, R. P., and Teebor, G. W. (1997) Cloning and expression of the cDNA encoding the human homologue of the DNA repair enzyme, Escherichia coli endonuclease III. J. Biol. Chem. 272, 6733-6740.
    • (1997) J. Biol. Chem. , vol.272 , pp. 6733-6740
    • Hilbert, T.P.1    Chaung, W.2    Boorstein, R.J.3    Cunningham, R.P.4    Teebor, G.W.5
  • 73
    • 0032555571 scopus 로고    scopus 로고
    • Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue
    • Ikeda, S., Biswas, T., Roy, R., Izumi, T., Boldogh, I., Kurosky, A., Sarker, A. H., Seki, S., and Mitra, S. (1998) Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue. J. Biol. Chem. 273, 21585-21593.
    • (1998) J. Biol. Chem. , vol.273 , pp. 21585-21593
    • Ikeda, S.1    Biswas, T.2    Roy, R.3    Izumi, T.4    Boldogh, I.5    Kurosky, A.6    Sarker, A.H.7    Seki, S.8    Mitra, S.9
  • 74
  • 75
    • 0037162995 scopus 로고    scopus 로고
    • Identification and characterization of a novel human DNA glycosylase for repair of cytosine-derived lesions
    • Hazra, T. K., Kow, Y. W., Hatahet, Z., Imhoff, B., Boldogh, I., Mokkapati, S. K., Mitra, S., and Izumi, T. (2002) Identification and characterization of a novel human DNA glycosylase for repair of cytosine-derived lesions. J. Biol. Chem. 277, 30417-30420.
    • (2002) J. Biol. Chem. , vol.277 , pp. 30417-30420
    • Hazra, T.K.1    Kow, Y.W.2    Hatahet, Z.3    Imhoff, B.4    Boldogh, I.5    Mokkapati, S.K.6    Mitra, S.7    Izumi, T.8
  • 76
    • 0037125133 scopus 로고    scopus 로고
    • A novel human DNA glycosylase that removes oxidative DNA damage and is homologous to Escherichia coli endonuclease VIII
    • DOI 10.1016/S1568-7864(02)00036-8, PII S1568786402000368
    • Bandaru, V., Sunkara, S., Wallace, S. S., and Bond, J. P. (2002) A novel human DNA glycosylase that removes oxidative DNA damage and is homologous to Escherichia coli endonuclease VIII. DNA Repair (Amsterdam) 1, 517-529. (Pubitemid 34655710)
    • (2002) DNA Repair , vol.1 , Issue.7 , pp. 517-529
    • Bandaru, V.1    Sunkara, S.2    Wallace, S.S.3    Bond, J.P.4
  • 77
    • 1842638748 scopus 로고    scopus 로고
    • Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions
    • Katafuchi, A., Nakano, T., Masaoka, A., Terato, H., Iwai, S., Hanaoka, F., and Ide, H. (2004) Differential specificity of human and Escherichia coli endonuclease III and VIII homologues for oxidative base lesions. J. Biol. Chem. 279, 14464-14471.
    • (2004) J. Biol. Chem. , vol.279 , pp. 14464-14471
    • Katafuchi, A.1    Nakano, T.2    Masaoka, A.3    Terato, H.4    Iwai, S.5    Hanaoka, F.6    Ide, H.7
  • 79
    • 34248207698 scopus 로고    scopus 로고
    • Lesion specificity in the base excision repair enzyme hNeil1: Modeling and dynamics studies
    • DOI 10.1021/bi062269m
    • Jia, L., Shafirovich, V., Geacintov, N. E., and Broyde, S. (2007) Lesion specificity in the base excision repair enzyme hNeil1: Modeling and dynamics studies. Biochemistry 46, 5305-5314. (Pubitemid 46717254)
    • (2007) Biochemistry , vol.46 , Issue.18 , pp. 5305-5314
    • Jia, L.1    Shafirovich, V.2    Geacintov, N.E.3    Broyde, S.4
  • 80
    • 34848899274 scopus 로고    scopus 로고
    • Enzymatic capture of an extrahelical thymine in the search for uracil in DNA
    • Parker, J. B., Bianchet, M. A., Krosky, D. J., Friedman, J. I., Amzel, L. M., and Stivers, J. T. (2007) Enzymatic capture of an extrahelical thymine in the search for uracil in DNA. Nature 449, 433-437.
    • (2007) Nature , vol.449 , pp. 433-437
    • Parker, J.B.1    Bianchet, M.A.2    Krosky, D.J.3    Friedman, J.I.4    Amzel, L.M.5    Stivers, J.T.6


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