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Volumn 56, Issue 6, 2009, Pages 809-827

Development of SSR-based sorghum (Sorghum bicolor (L.) Moench) diversity research set of germplasm and its evaluation by morphological traits

Author keywords

Genetic diversity; Linkage map; Microsatellites; Morphological traits; Sorghum bicolor; Sorghum diversity research set

Indexed keywords

AGRONOMY; CHROMOSOME; CLUSTER ANALYSIS; GENETIC MARKER; GENETIC RESOURCE; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; GERMPLASM; MORPHOLOGY; SORGHUM;

EID: 70350000600     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-008-9403-1     Document Type: Article
Times cited : (82)

References (48)
  • 1
    • 3042640396 scopus 로고    scopus 로고
    • Phylogenetic diversity and relationships among sorghum accessions using SSRs and RAPDs
    • Agarma HA, Tuinstra MR (2003) Phylogenetic diversity and relationships among sorghum accessions using SSRs and RAPDs. Afr J Biotechnol 2:334-340.
    • (2003) Afr J Biotechnol , vol.2 , pp. 334-340
    • Agarma, H.A.1    Tuinstra, M.R.2
  • 3
    • 0037282833 scopus 로고    scopus 로고
    • Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions
    • doi:10.1023/A:1022310014075
    • Alamnza-Pinzon MI, Khairullah M, Fox PN, Warburton ML (2003) Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions. Euphytica 130:77-86. doi:10.1023/A:1022310014075.
    • (2003) Euphytica , vol.130 , pp. 77-86
    • Alamnza-Pinzon, M.I.1    Khairullah, M.2    Fox, P.N.3    Warburton, M.L.4
  • 4
    • 41549138411 scopus 로고    scopus 로고
    • Ali ML, Rajewski JF, Baenziger PS, Gill KS, Eskridge KM, Dweikat L (2007) Assessment of genetic diversity and relationship among a collection of US sweet sorghum germplasm by SSR markers. Mol Breed. doi:10.1007/s11032-007-9149-z
    • Ali ML, Rajewski JF, Baenziger PS, Gill KS, Eskridge KM, Dweikat L (2007) Assessment of genetic diversity and relationship among a collection of US sweet sorghum germplasm by SSR markers. Mol Breed. doi:10.1007/s11032-007-9149-z.
  • 5
    • 3042648973 scopus 로고    scopus 로고
    • Genetic diversity among Japanese cultivated sorghum assessed with simple sequence repeats markers
    • doi:10.1626/pps.7.217
    • Anas, Yoshida T (2004) Genetic diversity among Japanese cultivated sorghum assessed with simple sequence repeats markers. Plant Prod Sci 7:217-223. doi:10.1626/pps.7.217.
    • (2004) Plant Prod Sci , vol.7 , pp. 217-223
    • Anas1    Yoshida, T.2
  • 6
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • doi:10.1007/BF02672069
    • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208-218. doi:10.1007/BF02672069.
    • (1991) Plant Mol Biol Rep , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 7
    • 0036115845 scopus 로고    scopus 로고
    • Geographic and altitudinal allozyme variation in sorghum (Sorghum bicolor (L.) Moench) landraces from Ethiopia and Eritrea
    • doi:10.1111/j.1601-5223.2001.t01-1-00001.x
    • Ayana A, Bryngelsson T, Bekele E (2000) Geographic and altitudinal allozyme variation in sorghum (Sorghum bicolor (L.) Moench) landraces from Ethiopia and Eritrea. Hereditas 135:1-12. doi:10.1111/j.1601-5223.2001.t01-1-00001.x.
    • (2000) Hereditas , vol.135 , pp. 1-12
    • Ayana, A.1    Bryngelsson, T.2    Bekele, E.3
  • 8
    • 0034508740 scopus 로고    scopus 로고
    • An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench
    • Bhattramakki D, Dong J, Chhabra KA, Hart GE (2000) An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench. Genome 43:988-1002.
    • (2000) Genome , vol.43 , pp. 988-1002
    • Bhattramakki, D.1    Dong, J.2    Chhabra, K.A.3    Hart, G.E.4
  • 9
    • 0024916131 scopus 로고
    • Core collections: A practical approach to genetic resources management
    • Brown AHD (1989) Core collections: a practical approach to genetic resources management. Genome 31:818-824.
    • (1989) Genome , vol.31 , pp. 818-824
    • Brown, A.H.D.1
  • 10
    • 21444432552 scopus 로고    scopus 로고
    • Diversity and selection in sorghum: Simultaneous analyses using simple sequence repeats
    • doi:10.1007/s00122-005-1952-5
    • Casa A, Mitchell S, Hamblin M, Sun H, Bowers J, Paterson A, Aquadro C, Kresovich S (2005) Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats. Theor Appl Genet 111:23-30. doi:10.1007/s00122-005-1952-5.
    • (2005) Theor Appl Genet , vol.111 , pp. 23-30
    • Casa, A.1    Mitchell, S.2    Hamblin, M.3    Sun, H.4    Bowers, J.5    Paterson, A.6    Aquadro, C.7    Kresovich, S.8
  • 11
    • 0036151873 scopus 로고    scopus 로고
    • Comparative assessment of variation among sorghum germplasm accessions using seed morphology and RAPD measurements
    • Dahlberg JA, Zhang X, Hart GE, Mullet JE (2002) Comparative assessment of variation among sorghum germplasm accessions using seed morphology and RAPD measurements. Crop Sci 42:291-296.
    • (2002) Crop Sci , vol.42 , pp. 291-296
    • Dahlberg, J.A.1    Zhang, X.2    Hart, G.E.3    Mullet, J.E.4
  • 12
    • 14244265653 scopus 로고    scopus 로고
    • Development of a sorghum core collection: Refinement and evaluation of a subset from Sudan
    • doi:10.1663/0013-0001(2004)058[0556:DOASCC]2.0.CO;2
    • Dahlberg JA, Burke JJ, Rosenow DT (2004) Development of a sorghum core collection: refinement and evaluation of a subset from Sudan. Econ Bot 58:556-567. doi:10.1663/0013-0001(2004)058[0556:DOASCC]2.0.CO;2.
    • (2004) Econ Bot , vol.58 , pp. 556-567
    • Dahlberg, J.A.1    Burke, J.J.2    Rosenow, D.T.3
  • 14
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • doi:10.2307/1932409
    • Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297-302. doi:10.2307/1932409.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 15
    • 0034021510 scopus 로고    scopus 로고
    • Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers
    • doi:10.1007/s001220051371
    • Djè Y, Heuertz M, Lefèbvre C, Vekemans X (2000) Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers. Theor Appl Genet 100:918-925. doi:10.1007/s001220051371.
    • (2000) Theor Appl Genet , vol.100 , pp. 918-925
    • Djè, Y.1    Heuertz, M.2    Lefèbvre, C.3    Vekemans, X.4
  • 16
    • 0003980563 scopus 로고    scopus 로고
    • 2nd edn. John Wiley and Sons, New York
    • Doggett H (1998) Sorghum, 2nd edn. John Wiley and Sons, New York.
    • (1998) Sorghum
    • Doggett, H.1
  • 17
    • 70349982198 scopus 로고    scopus 로고
    • FAO (2004) Food and Agriculture Organization of the United Nations, Statistics Division
    • FAO (2004) Food and Agriculture Organization of the United Nations, Statistics Division. http://www.fao.org/es/ess/index_en.asp.
  • 18
    • 23944435675 scopus 로고    scopus 로고
    • The pattern of genetic diversity of Guinea-race Sorghum bicolor (L.) Moench landraces as revealed with SSR markers
    • doi:10.1007/s00122-005-1949-0
    • Folkertsma R, Frederick H, Rattunde W, Chandra S, Raju G, Hash C (2005) The pattern of genetic diversity of Guinea-race Sorghum bicolor (L.) Moench landraces as revealed with SSR markers. Theor Appl Genet 111:399-409. doi:10.1007/s00122-005-1949-0.
    • (2005) Theor Appl Genet , vol.111 , pp. 399-409
    • Folkertsma, R.1    Frederick, H.2    Rattunde, W.3    Chandra, S.4    Raju, G.5    Hash, C.6
  • 19
    • 0000618321 scopus 로고
    • Genetic Perspectives of Germplasm Conservation
    • W. Arber, K. Llimensee, W. J. Peacock, and P. Starlinger (Eds.), Cambridge: Cambridge University Press
    • Frankel OH (1984) Genetic perspectives of germplasm conservation. In: Arber W, Llimensee K, Peacock WJ, Starlinger P (eds) Genetic manipulation: impact on man and society. Cambridge University Press, Cambridge, pp 161-170.
    • (1984) Genetic Manipulation: Impact on Man and Society , pp. 161-170
    • Frankel, O.H.1
  • 20
    • 27444446939 scopus 로고    scopus 로고
    • Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars
    • doi:10.1007/s10681-005-0626-3
    • Fufa H, Baenziger PS, Beecher BS, Dweikat I, Graybosch RA, Eskridge KM (2005) Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars. Euphytica 145:133-146. doi:10.1007/s10681-005-0626-3.
    • (2005) Euphytica , vol.145 , pp. 133-146
    • Fufa, H.1    Baenziger, P.S.2    Beecher, B.S.3    Dweikat, I.4    Graybosch, R.A.5    Eskridge, K.M.6
  • 21
    • 33750686651 scopus 로고    scopus 로고
    • Genetic diversity analysis in sorghum germplasm as estimated by AFLP, SSR and morpho-agronomical markers
    • doi:10.1007/s10531-005-0313-7
    • Geleta N, Labuschangne MT, Chris D, Viljoen CD (2006) Genetic diversity analysis in sorghum germplasm as estimated by AFLP, SSR and morpho-agronomical markers. Biodivers Conserv 15:3251-3265. doi:10.1007/s10531-005-0313-7.
    • (2006) Biodivers Conserv , vol.15 , pp. 3251-3265
    • Geleta, N.1    Labuschangne, M.T.2    Chris, D.3    Viljoen, C.D.4
  • 22
    • 0033926179 scopus 로고    scopus 로고
    • Assessment of genetic diversity in three subsets constituted from the ICRISAT sorghum collection using random vs non-random sampling procedures A. Using morpho-agronomical and passport data A. Using morpho-agronomical and passport data
    • doi:10.1007/s001220051468
    • Grenier C, Bramel-Cox PJ, Noirot M, Prasada Rao KE, Hamon P (2000) Assessment of genetic diversity in three subsets constituted from the ICRISAT sorghum collection using random vs non-random sampling procedures A. Using morpho-agronomical and passport data A. Using morpho-agronomical and passport data. Theor Appl Genet 101:190-196. doi:10.1007/s001220051468.
    • (2000) Theor Appl Genet , vol.101 , pp. 190-196
    • Grenier, C.1    Bramel-Cox, P.J.2    Noirot, M.3    Prasada Rao, K.E.4    Hamon, P.5
  • 23
    • 0037536750 scopus 로고    scopus 로고
    • Geographic information systems (GIS) and the conservation and use of plant genetic resources
    • J. M. M. Engels, V. Ramanatha Rao, A. H. D. Brown, and M. T. Jackson (Eds.), Oxon: CABI
    • Guarino L, Jarvis A, Hijmans RJ, Maxted N (2001) Geographic information systems (GIS) and the conservation and use of plant genetic resources. In: Engels JMM, Ramanatha Rao V, Brown AHD, Jackson MT (eds) Managing plant genetic diversity. CABI, Oxon, pp 171-178.
    • (2001) Managing Plant Genetic Diversity , pp. 171-178
    • Guarino, L.1    Jarvis, A.2    Hijmans, R.J.3    Maxted, N.4
  • 24
    • 1842465830 scopus 로고    scopus 로고
    • Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor
    • Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S (2004) Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor. Genetics 167:471-483.
    • (2004) Genetics , vol.167 , pp. 471-483
    • Hamblin, M.T.1    Mitchell, S.E.2    White, G.M.3    Gallego, J.4    Kukatla, R.5    Wing, R.A.6    Paterson, A.H.7    Kresovich, S.8
  • 25
    • 0001641283 scopus 로고
    • A simplified classification of cultivated sorghum
    • Harlan JR, de Wet JMJ (1972) A simplified classification of cultivated sorghum. Crop Sci 12:172-176.
    • (1972) Crop Sci , vol.12 , pp. 172-176
    • Harlan, J.R.1    de Wet, J.M.J.2
  • 26
    • 0038704041 scopus 로고
    • The races of Sorghum in Africa
    • J. R. Harlan, J. M. J. Wetde, and A. Stemler (Eds.), The Hague: Mouton Press
    • Harlan JR, Stemler A (1976) The races of Sorghum in Africa. In: Harlan JR, de Wet JMJ, Stemler A (eds) Origin of African plant domestication. Mouton Press, The Hague, pp 465-478.
    • (1976) Origin of African Plant Domestication , pp. 465-478
    • Harlan, J.R.1    Stemler, A.2
  • 27
    • 0033840223 scopus 로고    scopus 로고
    • Characteristics, linkage-map positions, and allelic differentiation of Sorghum bicolor (L.) Moench DNA simple-sequence repeats (SSRs)
    • doi:10.1007/s001220051501
    • Kong L, Dong J, Hart GE (2000) Characteristics, linkage-map positions, and allelic differentiation of Sorghum bicolor (L.) Moench DNA simple-sequence repeats (SSRs). Theor Appl Genet 101:438-448. doi:10.1007/s001220051501.
    • (2000) Theor Appl Genet , vol.101 , pp. 438-448
    • Kong, L.1    Dong, J.2    Hart, G.E.3
  • 29
    • 0036010769 scopus 로고    scopus 로고
    • A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926AFLP, RFLP and SSR markers
    • Menz MA, Klein RR, Mullet JE, Obert JA, Unruh NC, Klein PE (2002) A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926AFLP, RFLP and SSR markers. Plant Mol Biol 48:483-499.
    • (2002) Plant Mol Biol , vol.48 , pp. 483-499
    • Menz, M.A.1    Klein, R.R.2    Mullet, J.E.3    Obert, J.A.4    Unruh, N.C.5    Klein, P.E.6
  • 30
    • 3843095913 scopus 로고    scopus 로고
    • Genetic diversity of public inbreds of sorghum determined by mapped AFLP and SSR markers
    • Menz M, Klein R, Unruh N, Rooney W, Klein P, Mullet J (2004) Genetic diversity of public inbreds of sorghum determined by mapped AFLP and SSR markers. Crop Sci 44:1236-1244.
    • (2004) Crop Sci , vol.44 , pp. 1236-1244
    • Menz, M.1    Klein, R.2    Unruh, N.3    Rooney, W.4    Klein, P.5    Mullet, J.6
  • 31
    • 34249954395 scopus 로고
    • Allozyme variation among the spontaneous species of Sorghum section Sorghum (Poaceae)
    • doi:10.1007/BF00210063
    • Morden CW, Doebley K, Schertz KF (1990) Allozyme variation among the spontaneous species of Sorghum section Sorghum (Poaceae). Theor Appl Genet 80:296-304. doi:10.1007/BF00210063.
    • (1990) Theor Appl Genet , vol.80 , pp. 296-304
    • Morden, C.W.1    Doebley, K.2    Schertz, K.F.3
  • 32
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • doi:10.1093/nar/8.19.4321
    • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325. doi:10.1093/nar/8.19.4321.
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 33
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • doi:10.1073/pnas.76.10.5269
    • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273. doi:10.1073/pnas.76.10.5269.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 34
    • 0030019563 scopus 로고    scopus 로고
    • The principal component scoring: A new method of constituting a core collection using quantitative data
    • doi:10.1007/BF00126934
    • Noirot M, Hamon S, Anthony F (1996) The principal component scoring: a new method of constituting a core collection using quantitative data. Genet Resour Crop Evol 43:1-6. doi:10.1007/BF00126934.
    • (1996) Genet Resour Crop Evol , vol.43 , pp. 1-6
    • Noirot, M.1    Hamon, S.2    Anthony, F.3
  • 35
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: Genetic analysis in excel, population genetic software for teaching and research
    • doi:10.1111/j.1471-8286.2005.01155.x
    • Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in excel, population genetic software for teaching and research. Mol Ecol Notes 6:288-295. doi:10.1111/j.1471-8286.2005.01155.x.
    • (2006) Mol Ecol Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 36
    • 0032433835 scopus 로고    scopus 로고
    • Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs
    • doi:10.1007/s001220051017
    • Pejic I, Ajmone-Marsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M (1998) Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs. Theor Appl Genet 97:1248-1255. doi:10.1007/s001220051017.
    • (1998) Theor Appl Genet , vol.97 , pp. 1248-1255
    • Pejic, I.1    Ajmone-Marsan, P.2    Morgante, M.3    Kozumplick, V.4    Castiglioni, P.5    Taramino, G.6    Motto, M.7
  • 37
    • 0034761022 scopus 로고    scopus 로고
    • Chinese sorghum genetic resources
    • Qingshan L, Dahlberg JA (2001) Chinese sorghum genetic resources. Econ Bot 55:401-425.
    • (2001) Econ Bot , vol.55 , pp. 401-425
    • Qingshan, L.1    Dahlberg, J.A.2
  • 38
    • 34548364157 scopus 로고    scopus 로고
    • An assessment of the genetic relationship between sweet and grain sorghums, within Sorghum bicolor ssp. bicolor (L.) Moench, using AFLP markers
    • doi:10.1007/s10681-007-9408-4
    • Ritter KB, Lynne McIntyre C, Godwin ID, Jordan DR, Chapman SC (2007) An assessment of the genetic relationship between sweet and grain sorghums, within Sorghum bicolor ssp. bicolor (L.) Moench, using AFLP markers. Euphytica 157:161-176. doi:10.1007/s10681-007-9408-4.
    • (2007) Euphytica , vol.157 , pp. 161-176
    • Ritter, K.B.1    Lynne McIntyre, C.2    Godwin, I.D.3    Jordan, D.R.4    Chapman, S.C.5
  • 40
    • 70349994922 scopus 로고    scopus 로고
    • SAS Institute Inc (2002) JMP statistical and graphics guide, version 5. SAS Institute Inc, Cary
    • SAS Institute Inc (2002) JMP statistical and graphics guide, version 5. SAS Institute Inc, Cary.
  • 41
    • 0346195650 scopus 로고    scopus 로고
    • Characterization of RFLP probe sequences for gene discovery and SSR development in Sorghum bicolor L. Moench
    • doi:10.1007/s00122-002-0991-4
    • Schloss SJ, Mitchell SE, White GM, Kukatla R, Bowers JE, Paterson AH, Kresovich S (2002) Characterization of RFLP probe sequences for gene discovery and SSR development in Sorghum bicolor L. Moench. Theor Appl Genet 105:912-920. doi:10.1007/s00122-002-0991-4.
    • (2002) Theor Appl Genet , vol.105 , pp. 912-920
    • Schloss, S.J.1    Mitchell, S.E.2    White, G.M.3    Kukatla, R.4    Bowers, J.E.5    Paterson, A.H.6    Kresovich, S.7
  • 43
    • 70349995406 scopus 로고    scopus 로고
    • Somers DJ, Banks T, Depauw R, Clarke J, Fox S, Pozniak C (2007) Genome-wide linkage disequilibrium in wheat. In: Plant and animal genome XV conference, 13-17 Jan 2007, San Diego, CA, Poster abstract P268
    • Somers DJ, Banks T, Depauw R, Clarke J, Fox S, Pozniak C (2007) Genome-wide linkage disequilibrium in wheat. In: Plant and animal genome XV conference, 13-17 Jan 2007, San Diego, CA, Poster abstract P268.
  • 44
    • 0001313714 scopus 로고
    • DNA polymorphisms in grain sorghum (Sorghum bicolor (L.) Moench)
    • doi:10.1007/BF00222656
    • Tao Y, Manners J, Ludlow M, Henzell R (1993) DNA polymorphisms in grain sorghum (Sorghum bicolor (L.) Moench). Theor Appl Genet 86:679-688. doi:10.1007/BF00222656.
    • (1993) Theor Appl Genet , vol.86 , pp. 679-688
    • Tao, Y.1    Manners, J.2    Ludlow, M.3    Henzell, R.4
  • 45
    • 0030818451 scopus 로고    scopus 로고
    • Characterization and mapping of simple sequence repeats (SSRs) in Sorghum bicolor
    • doi:10.1007/s001220050533
    • Taramino G, Tarchini R, Ferrario S, Lee M, Pe ME (1997) Characterization and mapping of simple sequence repeats (SSRs) in Sorghum bicolor. Theor Appl Genet 95:66-72. doi:10.1007/s001220050533.
    • (1997) Theor Appl Genet , vol.95 , pp. 66-72
    • Taramino, G.1    Tarchini, R.2    Ferrario, S.3    Lee, M.4    Pe, M.E.5
  • 46
    • 0038115455 scopus 로고    scopus 로고
    • Comparative analysis on the genetic relatedness of Sorghum bicolor accessions from Southern Africa by RAPDs, AFLPs and SSRs
    • Uptmoor R, Wenzel W, Friedt W, Donaldson G, Ayisi K, Ordon F (2003) Comparative analysis on the genetic relatedness of Sorghum bicolor accessions from Southern Africa by RAPDs, AFLPs and SSRs. Theor Appl Genet 106:1316-1325.
    • (2003) Theor Appl Genet , vol.106 , pp. 1316-1325
    • Uptmoor, R.1    Wenzel, W.2    Friedt, W.3    Donaldson, G.4    Ayisi, K.5    Ordon, F.6


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