Genetic diversity among Japanese cultivated sorghum assessed with simple sequence repeats markers

Plant Production Science

Volumn 7, Issue 2, 2004, Pages 217-223

  Anas, ^a,c   Yoshida, Tomohiko ^b  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^b UTSUNOMIYA UNIVERSITY   (Japan)

^c PADJADJARAN UNIVERSITY   (Indonesia)

Author keywords

Genetic diversity; Sorghum; SSR

Indexed keywords

EMBRYOPHYTA; TRANSPOSONS;

EID: 3042648973     PISSN: 1343943X     EISSN: None     Source Type: Journal    
DOI: 10.1626/pps.7.217     Document Type: Article

References (27)

1. Anas and Yoshida, T. 2000. Screening of Al-tolerant sorghum by hematoxylin staining and growth response. Plant Prod. Sci. 3 : 246-253.
2. Anas and Yoshida, T. 2002. Genotypic difference of Sorghum bicolorin the callus formation and callus growth on aluminum-containing medium. Plant Prod. Sci. 5 : 242-247.
3. Bowers, J.E., Abbey, C., Anderson S., Chang, C., Draye, X., Hoppe, A.H., Jessup, R., Lemke, C., Lennington, J., Li, Z., Lin, Y.R., Liu, S.C., Luo, L., Marler, B.S., Ming, R., Mitchell, S.E., Qiang, D., Reischmann, K., Schulze, S.R., Skinner, D.N., Wang, Y.W., Kresovich, S., Schertz, K.F. and Peterson, A.H. 2003. A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses. Genetics 165 : 367-386.
4. Brown, S.M., Hopkins, M.S., Mitchell, S.E., Senior M.L., Wang, T.Y., Duncan, R.R., Gonzales-Candelas, F. and Kresovich, S. 1996. Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum [Sorghum bicolor (L.) Moench]. Theor. Appl. Genet. 93 : 190-198.
5. Callen, D.F., Thompson, A.D., Shen, Y., Phillips, H.A., Richards, R.I., Mulley, J.C. and Sutherland, G.R. 1993. Incidence and origin of "null" alleles in the (AC) n microsatellite markers. Am. J. Hum. Genet. 52 : 922-927.
6. Can, N.D., Nakamura, S. and Yoshida, T. 1997. Combining ability and genotype x environmental interaction in early maturing grain sorghum for summer seeding. Jpn. J. Crop. Sci. 66 : 698-705.
7. Can, N.D. and Yoshida, T. 1999a. Breeding for high yield, early maturity and short plant height in sorghum : heterosis and combining ability. Proc. Int. Symp. "World Food Security", Kyoto. 129-132.
8. Can, N.D. and Yoshida, T. 1999b. Genotypic and phenotypic variances and covariances in early maturing grain sorghum in a double cropping. Plant Prod. Sci. 2 : 67-70.
9. Can, N.D. and Yoshida, T. 1999c. Grain yield of sorghum cultivars in a double cropping system. Plant Prod. Sci. 2 : 121-124.
10. Dean, R.E., Dahlberg, J.A., Hopkins, M.S., Mitchell, S.E., and Kresovich, S. 1999. Genetic redundancy and diversity among 'Orange' accession in the U.S. National sorghum collection as assessed with simple sequence repeats (SSR) markers. Crop Sci. 39 : 1215-1221.
11. Dje, Y., Heuertz, M., Lefebvre, C. and Vekemans, X. 2000. Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers. Theor. Appl. Genet. 100 : 918-925.
12. Fehr, W.R. 1987. Principles of Cultivar Development Vol.1. Theory and technique. Macmillan Publishing Company, New York. 95-105.
13. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
14. Ghebru, B., Schmidt, R.J. and Bennetzen, J.L. 2002. Genetic diversity of Eritrean sorghum landraces assessed with simple sequence repeat (SSR) markers. Theor. Appl. Genet. 105 : 229-236.
15. Karp, A., Seberg, O. and Buiatti, M. 1996. Molecular techniques in the assessment of botanical diversity. Annals of Botany 78 : 143-149.
16. Matano, T. 2000. Sorghum. In R. Ishii ed., Crop Science - Eatable Crop (Translation from Japanese). Bun-ei-dou Publishing Co., Tokyo. 150-156.*
17. Menz, M.A., Klein, R.R., Mullet, J.E., Obert, J.A., Unruh, N.C. and Klein, P.E. 2002. A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP, and SSR markers. Plant Mol. Biol. 48 : 483-499.
18. Paetkau, D. and Strobeck, C. 1995. The molecular basis and evolutionary history of a microsatellite null allele in bears. Mol. Ecol. 4 : 519-520.
19. Page, R. D. M. 1996. TREEVIEW : An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12 : 357-358.
20. Reif, J.C., Melchinger, A.E., Xia, X.C., Warburton, M.L., Hoisington, D.A., Vasal, S.K., Srinivasan, G., Bohn, M., and Frisch, M. 2003. Genetic distance based on simple sequence repeats and heterosis in tropical maize populations. Crop Sci. 43 : 1275-1282.
21. Rodriguez, S., Visedo, G. and Zapata, C. 2001. Detection of errors in dinucleotide repeat typing by nondenaturating electrophoresis. Electrophoresis 22 : 2656-2664.
22. Saghai-Maroof, M.A., Biyashev, R.M., Yang, G.P., Zhang, Q. and Allard, R.W. 1994. Extraordinarily polymorphic microsatellite DNA in barley : species diversity, chromosomal locations, and population dynamics. Proc. Natl. Acad. Sci. (USA) 91 : 5466-5470.
23. Saitou, N. and Nei, M. 1987. The neighbor-joining method : a new method of reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
24. Schneider, S., Roessli, D. and Excoffier, L. 2000. Arlequin ver. 2000; A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
25. Smith, J.S.C., Kresovich, S., Hopkins, M.S., Mitchell, S.E., Dean, R.E., Woodman, W.L., Lee, M., and Porter, K., 2000. Genetic diversity among elite sorghum inbred lines assessed with simple sequence repeats. Crop Sci. 40 : 226-232.
26. Uptmoor, R., Wenzel, W., Friedt, W., Donaldson, G., Ayisi, K. and Ordon, F. 2003. Comparative analysis on the genetic relatedness of Sorghum bicolor accessions from Southern Africa by RAPDs, AFLPs and SSRs. Theor. Appl. Genet. 106 : 1316-1325.
27. Wang, D., Shi, J., Carlson, S.R., Cregan, P.B., Ward, R.W. and Diers, B.W. 2003. A low-cost, high-throughput polyacrylamide gel electrophoresis system for genotyping with microsatellite DNA markers. Crop Sci. 43 : 1828-1832.