Characterization and mapping of simple sequence repeats (SSRS) in Sorghum bicolor

Theoretical and Applied Genetics

Volumn 95, Issue 1-2, 1997, Pages 66-72

  Taramino, G ^a,c   Tarchini, R ^a,c   Ferrario, S ^a   Lee, M ^b   Pe', M E ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b IOWA STATE UNIVERSITY   (United States)

^c DUPONT COMPANY   (United States)

Author keywords

Mapping; Polymorphism; Simple sequence repeats (SSRs); Sorqhum bicolor

Indexed keywords

SORGHUM BICOLOR;

EID: 0030818451     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220050533     Document Type: Article

References (37)

1. Aldrich PR, Doebley J (1992) Restriction fragment variation in the nuclear and chloroplastic genomes of cultivated and wild Sorghum bicolor. Theor Appl Genet 85:293-302
2. Aldrich PR, Doebley J, Schertz KF, Stec A (1992) Patterns of allozyme variation in cultivated and wild Sortghum bicolor. Theor Appl Genet 85:451-460
3. Binelli G, Gianfranceschi L, Pe' ME, Taramino G, Busso C, Stenhouse J, Ottaviano E (1992) Similarity of maize and sorghum genomes as revealed by maize RFLP probes. Theor Appl Genet 84:10-16
4. Broun P, Tanksley SD (1996) Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol Gen Genet 250:39-49
5. Chittenden LM, Schertz KF, Lin YR, Wing RA, Paterson AH (1994) A detailed RFLP map of Sorghum bicolor × S. propinquum suitable for high-density mapping suggests ancestral duplication of sorghum chromosomes. Theor Appl Genet 87:925-933
6. Cregan PB, Bhagwat AA, Akkaya MS, Rongwen J (1994) Microsatellite fingerprinting and mapping of soybean. Methods Mol Cell Biol 5:49-61
7. Cui YX, Xu GW, Magill CW, Schertz KF, Hart GE (1995) RFLP-based assay of Songhum bicolor (L.) Moench genetic diversity. Theor Appl Genet 90:787-796
8. Dellaporta SL, Wood J, Hicks JB (1985) Molecular biology of plants. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
9. DeRose RT, Ma D, Kwon I, Hasnain SE, Klassy RC, Hall TC (1989) Characterization of the kafirin gene family from sorghum reveals extensive homology with zein from maize. Plant Mol Biol 12:245-256
10. Deu M, Hamon P, Chantereau J, Dufour P, D'hont A, Lanaud C (1995) Mitochondrial DNA diversity in wild and cultivated sorghum. Genome 38:635-645
11. Doggett H (1988) Sorghum, 2nd edn. John Wiley and Sons, New York
12. Gregorius HR (1987) The relationship between the concepts of genetic diversity and differentiation. Theor Appl Genet 74: 397-401
13. Hearne CM, Ghosh S, Todd JA (1992) Microsatellites for linkage analysis of genetic traits. Trends Genet 8:288-294
14. Hulbert SH, Richter TE, Axtell JD, Bennetzen JL (1990) Genetic mapping and characterization of sorghum-related crops by means of maize DNA probes. Proc Natl Acad Sci USA 87:4251-4255
15. Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115
16. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987)Mapmaker: an interactive computer package for constructing primary linkage maps of experimental and natural populations. Genomics 1:174-181
17. Levinson G, Gutman GA (1987) Slipped-strand mispairing:a major mechanism for DNA sequence evolution. Mol Biol Evol 4: 203-221
18. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
19. Morgante M, Rafalski A, Biddle P, Tingey S, Olivieri AM (1994) Genetic mapping and variability of seven soybean simple sequence repeat loci. Genome 37:763-769
20. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
21. Pammi S, Schertz K, Xu G, Hart G, Mullet JE (1994) Random-amplified-polymorphic DNA markers in sorghum. Theor Appl Genet 89:80-88
22. Pereira MG, Lee M, Bramel-Cox P, Woodman W, Doebley J, Whitkus R (1994) Construction of an RFLP map in sorghum and comparative mapping in maize. Genome 37:236-243
23. Rafalski JA, Vogel JM, Morgante M, Powell W, Tingey SV (1996) Generating new DNA markers in plants. In: Birren B, Lai E, (eds) Analysis of non-mammalian genomes - a practical guide. Orlando Academic Press, pp 75-134
24. Ragab RA, Dronavalli S, Saghai Maroof MA, Yu YG (1994) Construction of a sorghum RFLP linkage map using sorghum and maize DNA probes. Genome 37:590-594
25. Rôder MS, Plaske J, König SU, Bölner A, Sorrels ME, Tanksley SD, Ganal MK (1995) Abundance, variability and chromosomal location of microsatellites in wheat. Mol Gen Genet 246:327-333
26. Saghai Maroof MA, Biyashev RB, Yang GP, Zhang Q, Allard LW (1994) Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations and population dynamics. Proc Natl Acad Sci USA 91:5466-5470
27. Sambrook J, Fritsch EF and Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
28. Senior ML and Heun M (1993) Mapping microsatellites and polymerase chain confirmation of the targeted repeats using a CT primer. Genome 36:884-889
29. Tao Y, Manners Jm, Ludlow MM, Henzell RG (1993) DNA polymorphisms in grain sorghum [Sorghum bicolor (L.) Moench]. Theor Appl Genet 86:679-688
30. Taramino G, Tingey S (1996) Simple sequence repeats for germ plasm analysis and mapping in maize. Genome 39:277-287
31. Wang Z, Weber JL, Zhong G, Tanskley SD (1994) Survey of plant short tandem DNA repeats. Theor Appl Genet 88:1-6
32. n polymorphisms. Genomics 7:524-530
33. Whitkus R, Doebley J, Lee M (1992) Comparative genome mapping of sorghum and maize. Genetics 132:1119-1130
34. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Res 18:6531-6535
35. Wu KS, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241:225-235
36. Xu GW, Magill CV, Schertz KF, Hart GE (1994) A RFLP linkage map of Sorghum bicolor (L.) Moench. Theor Appl Genet 89:139-145
37. Yang GP, Saghai Maroof MA, Xu Qifa Zhang CG, Biyashev RM (1994) Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Mol Gen Genet 245:187-194